Basic Information

Insect: Drosophila bocki
Gene Symbol: -
Assembly: GCA_008042715.1
Location: VNJY01003069.1:20099-26904[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2e-05 0.0014 18.8 2.1 1 23 225 247 225 247 0.97

2 18 6.6e-06 0.00048 20.3 0.4 1 23 253 275 253 275 0.97

3 18 0.00097 0.07 13.5 0.9 1 23 281 303 281 303 0.95

4 18 1.4e-05 0.001 19.3 3.1 1 23 309 331 309 331 0.97

5 18 3.2e-05 0.0023 18.2 4.7 1 23 337 359 337 359 0.99

6 18 5.8e-05 0.0042 17.3 5.7 1 23 365 387 365 387 0.97

7 18 2.8e-07 2e-05 24.6 4.3 1 23 393 415 393 415 0.98

8 18 1e-07 7.3e-06 26.0 2.4 1 23 421 443 421 443 0.97

9 18 5.9e-05 0.0043 17.3 6.7 1 23 450 472 450 472 0.97

10 18 0.0001 0.0074 16.6 6.5 1 23 478 500 478 500 0.98

11 18 9.2e-06 0.00066 19.9 4.5 1 23 506 528 506 528 0.98

12 18 6.7e-06 0.00048 20.3 8.1 1 23 534 556 534 556 0.98

13 18 5.4e-06 0.00039 20.6 7.6 1 23 562 584 562 584 0.97

14 18 6.1e-07 4.4e-05 23.6 7.7 1 23 590 612 590 612 0.98

15 18 0.00019 0.014 15.7 9.5 1 23 618 641 618 641 0.95

16 18 6.7e-05 0.0049 17.1 0.9 1 23 647 669 647 669 0.98

17 18 0.00074 0.053 13.9 3.4 1 23 679 701 679 701 0.97

18 18 8.4e-06 0.00061 20.0 1.6 1 23 707 730 707 730 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2e-05	0.0014	18.8	2.1	1	23	225	247	225	247	0.97
2	18	6.6e-06	0.00048	20.3	0.4	1	23	253	275	253	275	0.97
3	18	0.00097	0.07	13.5	0.9	1	23	281	303	281	303	0.95
4	18	1.4e-05	0.001	19.3	3.1	1	23	309	331	309	331	0.97
5	18	3.2e-05	0.0023	18.2	4.7	1	23	337	359	337	359	0.99
6	18	5.8e-05	0.0042	17.3	5.7	1	23	365	387	365	387	0.97
7	18	2.8e-07	2e-05	24.6	4.3	1	23	393	415	393	415	0.98
8	18	1e-07	7.3e-06	26.0	2.4	1	23	421	443	421	443	0.97
9	18	5.9e-05	0.0043	17.3	6.7	1	23	450	472	450	472	0.97
10	18	0.0001	0.0074	16.6	6.5	1	23	478	500	478	500	0.98
11	18	9.2e-06	0.00066	19.9	4.5	1	23	506	528	506	528	0.98
12	18	6.7e-06	0.00048	20.3	8.1	1	23	534	556	534	556	0.98
13	18	5.4e-06	0.00039	20.6	7.6	1	23	562	584	562	584	0.97
14	18	6.1e-07	4.4e-05	23.6	7.7	1	23	590	612	590	612	0.98
15	18	0.00019	0.014	15.7	9.5	1	23	618	641	618	641	0.95
16	18	6.7e-05	0.0049	17.1	0.9	1	23	647	669	647	669	0.98
17	18	0.00074	0.053	13.9	3.4	1	23	679	701	679	701	0.97
18	18	8.4e-06	0.00061	20.0	1.6	1	23	707	730	707	730	0.96

Sequence Information

Coding Sequence: ATGCAGCACGTGAGCGCTGCCAGCTCGGTGCCATCAGTTGTAGCCCCCGTTGTGACCACTGGTGGGACGACGATCACCTTGGGCGGCCCACCACCGCTCCCCAAATCGGAGCACAAGGAGGATGGCAAGCCGCCGCACGGCATCGAGATGTACAAGGTGAACATCGAGGATATCTCTCAGCTCTTCACCTATCACGAGGTCTTTGGCAAGATCCATGGCGATGTTGTGAATCATCAATTGGCGGCGGCACATGGAGGCCAGCttccaccaccgccgccccTTCCACCGCAGGCCACTAGTCATGCGGCAAgtgcggcagcagcagccgcagcagcgtCCACAAATAATGCCGCTGTGGCGGCAGTGATGGCCTCCGCcaatgcggcggcggcggcagcagcggctgcatCCGCAGCGGGCGGCGGTGGAGGTCTGCCGCCGGCCACCAGCGGCAATGGGGGCCAGCAGGTGACGGTAACGACGACCAGCAGCTCGACGGCCAGCAGCGGCGGGAGCACCACCAGTGGGGGCACCACGACCACGGCGGGTGAGTTGCTTATGCCTAAAATGGAGGGCGGCATTCATGGCGTGGACGGCAGCGGcaatggcggcggcaacggcggGCAGAACGTGGCGCTGGCGCCGGACGGTACGCCAATTGCGACGGGGACGCACGTCTGCGACATTTGCGGCAAGATGTTCCAGTTCCGGTACCAGCTGATCGTGCACCGGCGCTACCACAGTGAACGGAAACCGTTCATGTGCCAGGTGTGTGGCCAGGGCTTCACCACGTCGCAGGATTTAACGCGCCACGGCAAGATTCATATTGGCGGGCCCATGTTCACCTGCATCGTATGCTTCAATGTGTTCGCGAACAATACGAGCCTGGAGCGGCACATGAAACGGCACTCGACGGACAAACCGTTCGCCTGCACCATTTGCCAAAAGACCTTTGCCCGCAAAGAGCATCTGGACAATCACTTTCGTTCGCATACGGGCGAAACGCCCTTCCGTTGCCAGTACTGCGCCAAGACGTTTACGCGCAAGGAGCACATGGTCAACCATGTGCGCAAACACACGGGTGAGACGCCACATCGTTGCGATATTTGTAAGAAGTCCTTTACGCGCAAGGAACACTATGTTAACCACTACATGTGGCACACTGGTCAAACGCCGCACCAGTGTGATGTCTGCGGCAAGAAATATACGCGCAAGGAGCACCTAGCCAACCATATGCGCTCCCACACCAACGAGACGCCGTTCCGTTGCGAGATCTGCGGCAAGAGCTTTAGCCGCAAGGAGCACTTCACCAACCACATACTCTGGCACACAGCAGGCGAGACGCCGCACCGGTGCGACTTCTGCTCAAAGACGTTTACGCGCAAGGAGCATTTGCTTAACCACGTGCGCCAGCACACGGGAGAGTCGCCACACCGCTGCTCCTACTGCATGAAGACGTTCACGCGCAAGGAGCATCTGGTCAACCACATACGCCAGCACACGGGTGAGACACCGTTCAAGTGCACGTACTGCACGAAAGCGTTCACGCGCAAAGATCACATGGTTAATCATGTACGGCAACATACAGGCGAGTCGCCGCACAAGTGCACATACTGCACCAAGACGTTTACGCGCAAGGAGCACCTGACGAACCATGTGCGCCAGCACACGGGCGACTCCCCGCACCGCTGCTCCTACTGCAAGAAGACGTTCACGCGGAAGGAGCACCTGACGAACCATGTGCGCCTCCATACGGGCGACTCGCCCCACAAGTGCGAGTACTGCCAGAAGACGTTTACGCGGAAGGAGCATCTCAACAACCATATGCGCCAGCATTCAAGCGACAATCCGCACTGCTGCAATGTCTGCAATAAGCCGTTCACGCGCAAGGAGCATCTGATCAATCATATGTCACGCTGCCACACCGGCGATCGGCCCTTCACCTGCGAGACATGCGGCAAATCGTTTCCGCTCAAGGGCAACCTGCTCTTCCATCAACGCAGCCACACCAAGGGCCAGGAGATGGAGAGACCATTTGCCTGCGAGAAGTGCCCCAAGAATTTCATCTGCAAAGGTCACTTGGTCTCGCACATGCGCTCCCATTCGGGCGAGAAACCGCACGCGTGCACTCTGTGCAGCAAGGCGTTCGTCGAGCGCGGCAATTTGAAGCGCCACATGAAGATGAATCACCCGGATGCTATGATGCCGCCACCACCcgtgcatccgcatccgcaaaTACCGGCTGGTGTGCTGACGCAAGTCAAGCAGGAAGTGAAACCGATCATAATTCCCCACCACTCGGCGACCACCACGATGCACACCATCCAGCAGATAACCGCTGGTGCGGCGGGCGGTGCCGGTGCCGTGCAGCTAACACCGGGTCTGGTGCCGCTGGTCACCTCAACGCTTATCTCGCACAATgccgccgcccagcagcagtcgcagAAGCAAcaggcagccgccgctgcagcggcTCAGCAACAggctgccgcagcagcagcggctcaGCAGCAGGCTGCCCAGCAACAGGCGGCGGCCGcccatcagcagcatcagcagcaagtGGCGGcacagcatcagcaacaggCGGCAGTGGCTGcccatcagcagcaacaacagcagctgcagcagcagcagcaattgctgCAGTTGTCCATCCAGCAGGCGGCTCATCACcatcagcaggagcagcatcgtcagcagcagcagcagcagcagcaacaccagcaacagcagcagcagcaacagcagcagcaacagcaccatcagcagcaacagcatccaGGCCaagcgccgccgccgcagcaacagccgcCACCTGGAGTGCCCATCGCCTTGATAAGTGATCCCAGTGCTTTGGCCCGCGCCGCcatgcagctgcagcatctGCCAGCGAACGTGGAGCAACATCCGGTTGTTTACTAA
Protein Sequence: MQHVSAASSVPSVVAPVVTTGGTTITLGGPPPLPKSEHKEDGKPPHGIEMYKVNIEDISQLFTYHEVFGKIHGDVVNHQLAAAHGGQLPPPPPLPPQATSHAASAAAAAAAASTNNAAVAAVMASANAAAAAAAAASAAGGGGGLPPATSGNGGQQVTVTTTSSSTASSGGSTTSGGTTTTAGELLMPKMEGGIHGVDGSGNGGGNGGQNVALAPDGTPIATGTHVCDICGKMFQFRYQLIVHRRYHSERKPFMCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNTSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNETPFRCEICGKSFSRKEHFTNHILWHTAGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGDSPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFTCETCGKSFPLKGNLLFHQRSHTKGQEMERPFACEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAMMPPPPVHPHPQIPAGVLTQVKQEVKPIIIPHHSATTTMHTIQQITAGAAGGAGAVQLTPGLVPLVTSTLISHNAAAQQQSQKQQAAAAAAAQQQAAAAAAAQQQAAQQQAAAAHQQHQQQVAAQHQQQAAVAAHQQQQQQLQQQQQLLQLSIQQAAHHHQQEQHRQQQQQQQQHQQQQQQQQQQQQHHQQQQHPGQAPPPQQQPPPGVPIALISDPSALARAAMQLQHLPANVEQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00505532;
90% Identity: iTF_00507738;
80% Identity: -