Basic Information

Insect: Drosophila bocki
Gene Symbol: retn_1
Assembly: GCA_008042715.1
Location: VNJY01001799.1:26798-38798[+]

Transcription Factor Domain

TF Family: ARID
Domain: ARID domain
PFAM: PF01388
TF Group: Helix-turn-helix
Description: This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 2.9e-26 7.8e-23 80.6 0.0 2 89 280 365 279 365 0.96

2 2 3 8.1e+03 -2.8 0.4 11 11 528 528 502 566 0.52

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	2.9e-26	7.8e-23	80.6	0.0	2	89	280	365	279	365	0.96
2	2	3	8.1e+03	-2.8	0.4	11	11	528	528	502	566	0.52

Sequence Information

Coding Sequence: ATGACCACTGCCCACGCCGGGCAGAAGATCTCTAAATCACATGGTGATCGAACAGACGACGAAATGAGAGACTGCGACTCTGTGGATGGAGAGCATCATCAGCTGAGCGCCAAGGCGGCTATAGCGGCCCGTCTAAGTCACACAGTTTCCGGCGGAGGAGGCAACTTTGCCAGTCCCGAGCCACAGACCGAGCTGCCCCTAAGccatcatcatcaactgCCGCCGAATCATCCGCTGAATGCCCTGGGCAGCTTCATGGGCATCGGTGGCCTACACAGCATTCCAAATTTGCAGCACAGCGATGTGCTAGAGAAGCTCAAGATGCAGGTGCGCGACATGAAGGTGGGACTGATGGAACAGGattatgcagcagcagcccatgCAGCGGCCTTTGGAGCCAACATGCTGCCCACTACCATCAACTCGGGCTTTCCGCTGCCCCACAATTCGgtggctgcagcagcggcagctgcctCTTTTGGTCATGTGACCTCGGCTCCGAGTGGTGGCAACAGCTACAATAACGGTGGAACCACCACAACAGCCAGCTCTAATAGTAATCCCAGCAGCAATGGAGGAGGAACAGGcacagctggaggaggagcagccacagGAACCGGCAGTGGCAATGCAAGTGGAGGAGGACACCCCTTCTCTTTTGCATCCCCAACAGCAGCGCCCAGTGGCAAAGAAGCCCGCCACTTTGCAGCCAATTCCGCATCGAACTCGTCGACGTCCAGCGAGGCATCCAATTCATCGCAGCAGAATAATGGATGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTATGAAATCAACGATGACCCCAAACGCAAAGAATTCCTGGAcgatttgttttcatttatgcaAAAGCGCGGTACCCCGATCAATCGGCTGCCGATCATGGCCAAATCGGTGCTGGATCTGTATGAACTGTACAATCTAGTGATAGCCCGCGGCGGTCTGGTGGATGTTATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGACTGCATCTGCCTTCAAGCATCACCAGTGCCGCCTTCACCCTGCGCACCCAATACATGAAGTATCTCTACCCGTACGAGTGCGAGAAGAAGAATCTGAGCACGCCGGCAGAGCTGCAGGCGGCCATCGATGGCAATCGGCGGGAAGGACGTCGCTCTAGCTACGGCCAGTATGAGGCCATGCACAATCAGATGCCGCTGACGCCCATTTCGCGACCCTCGCTTCCGGGTGGCATGCAGCAAATGTCGCCCCTGGCCCTGGTCACCCATGCCGCGGTGGCCAACAATCAGCAGGctcaggctgctgctgccgccgctgctgctcatcACCGATTGATGGGTGCCCCGGCCTTTGGCCAAATGCCCAACCTGGTCAAGCAGGAGATCGAAAGCCGTATGATGGAATATTTGCAGTTGATTCAGGCCAAGAAGGAGCAGGCCATGCCGCCGGGCCTGGGTGCTAGTTTGCCCcatcagcagcaccagcagcaacaggcacagcaccagcaacagcagcaacaatcgcagcagcagtctcaacagcagcagcagcaacatcacctgcagcagcaacagcagcagcgtcagCGCTCACAGAGCCCGGATTTGAGCAAGCACGAGGCGCTCAGCGCTCAGGTGGCCCTGTGGCACATGtatcacaacaacaacagtccGCCGGGATCCGCACACACCTCCCCGCAGCAACGCGAAGCTTTGAACCTCTCCGACTCACCGCCGAATCTCACGAATATCAAAAGGGAACGCGAGCGGGAGCCGACGCCCGAGCCCGTGGAGCAGGACGACCTGTCCGCTGGCCACCAACCACCGCCGGCCAAGCGCATGGGCAGCGGCCTCCTGCCACCCGGCTTCCCTGCCAACTTCTACCTGAATCCCCACAACATGGCcgcagtggcggcggcagcgggcTTCCACCatcagcaggcagcagcagcggcggcgggtcatcatcaccagcagcagcagcaacaagatgCCGCCTCCGAGGGCGAGCCGGAGGACGAGTATGGCCATGGAGAGCACAATACCACCGGCAACTCGTCCTCGCTGCACGACGACAGCGAGACAGCCCAGCCTATGAATGGCCATGgacaccatcaccatcatcatcaccagagCCATCATCAGCTGGATAAATCAGATGATTCGGCCATTGAGAACTCGCCCAGCActtccaccaccaccgcctcgGTGGGTCATCGTCACAGCTCGCCAGTGTCCACCAAGAAGAAGAGCGGCTGTGGGTCAAAGCCACAGGATAAGGATCTAGCTGGGGATAGCAAAAACTCTAACAGCAAGCTGAATCCTTTGGAAACTCTAAGCCTGCTCTCCGGCATGCAGTTCCAGGTGGCCAGAAATGGCACCAGTGAGAATGGAGAACAGCAGTTAATGGTCAATCTAGAGCTGAATGGCGTCAAGTACTCGGGTGTTCTGGTGGCCAATGTGGCTCACTCCAACCAGAGCTTGACCAGGAATAGCTCGCCCTGCCACGAGGCTGCAGAACCTCTAagccaggaggaggaagaggagcacGACGAAGAGGAAGAAGAGGAGCAGAGGAAAGTCGCTGAAGAGGAGGATGAAACCCATCGATCGCCCATTAAGCAGGAGGCAGACAACGAGCATGGGGATGACCAGGATATGGAGTCCACAGCGGCGGCTATAATAAatggagggggaggaggaggaggaggcaatGGCTCGGCTGTGGGTGGACCAGTGGCCATGCCCCTGGTCAGCTAG
Protein Sequence: MTTAHAGQKISKSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVSGGGGNFASPEPQTELPLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTINSGFPLPHNSVAAAAAAASFGHVTSAPSGGNSYNNGGTTTTASSNSNPSSNGGGTGTAGGGAATGTGSGNASGGGHPFSFASPTAAPSGKEARHFAANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPSLPGGMQQMSPLALVTHAAVANNQQAQAAAAAAAAHHRLMGAPAFGQMPNLVKQEIESRMMEYLQLIQAKKEQAMPPGLGASLPHQQHQQQQAQHQQQQQQSQQQSQQQQQQHHLQQQQQQRQRSQSPDLSKHEALSAQVALWHMYHNNNSPPGSAHTSPQQREALNLSDSPPNLTNIKREREREPTPEPVEQDDLSAGHQPPPAKRMGSGLLPPGFPANFYLNPHNMAAVAAAAGFHHQQAAAAAAGHHHQQQQQQDAASEGEPEDEYGHGEHNTTGNSSSLHDDSETAQPMNGHGHHHHHHHQSHHQLDKSDDSAIENSPSTSTTTASVGHRHSSPVSTKKKSGCGSKPQDKDLAGDSKNSNSKLNPLETLSLLSGMQFQVARNGTSENGEQQLMVNLELNGVKYSGVLVANVAHSNQSLTRNSSPCHEAAEPLSQEEEEEHDEEEEEEQRKVAEEEDETHRSPIKQEADNEHGDDQDMESTAAAIINGGGGGGGGNGSAVGGPVAMPLVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00527091;
90% Identity: iTF_00612597;
80% Identity: -