Dbir010809.1
Basic Information
- Insect
- Drosophila birchii
- Gene Symbol
- bab2
- Assembly
- GCA_008042755.1
- Location
- VNKA01006431.1:543523-545654[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.9e-18 1.2e-14 53.8 0.0 1 43 63 106 63 108 0.95
Sequence Information
- Coding Sequence
- ATGATTGAGAGTGGTGGACATGGTGGCTGGATGGGAGCTGCAGCCGCAGCTACCGGCGCTGCCTCAGTGGCCGCAGACAGTTACCAATACCAGTTGCAGTCCATGTGGCAAAAGTGCTGGAATACCAACCAACAGAACCTAGTGCAGCAGCTGAGATTCAGGGAGCGAGGACCTTTAAAGTCCTGGCGACCAGAGGCCATGGCCGAAGCCATCTTCAGTGTCCTGAAGGAGGGTCTATCCCTATCGCAGGCTGCCCGCAAATACGACATCCCCTATCCCACTTTCGTTCTTTATGCCAATCGAGTTCATAATATGCTGGGACCCTCATTGGATGGTGGTGCTGATCCAAGGCCCAAGGCCAGGGGTCGTCCACAAAGAATCCTGCTGGGCATGTGGCCCGAGGAGCTCATACGCAGCGTCATCAAAGCGGTGGTGTTTAGGGATTATCGGGAAATTAAAGAGGACATGAGTGCCCATCAGTATGCCAATGGACAGGCCCATGGTTCTCACTATGGCGCTGGTTCCGCTTCGAATGGCTATCACagtgccgctgccgctgccaaaATGGCTGCCCAGAATGCGGCACTGGCTCCGCCGGACGCTGGCAGTCCGCTGAGCTCCATGACGGAGACCCTGCGCCGTCAGATTctctcccagcagcagcaacaccaacagcagcaggcgcacCACCACCAGTCGCAGgcacaccaccagcagcagccatcgCACCACCCACAACAGTCGCCCCACGGCCAGTCGATGAACATGTACAAGTCACCGGCTTATCTGCAGCGCTCCGAGATCGAGGATCAAGTATCCGCGGCAGCggcagttgctgctgcggcggccaAACATCAGCaccaacagcaccagcagcagcaacagcagggaTCCGAGCGGCGGGGAGCAGAGAACCTGCCCGATCTCTCGGCTCTGGGACTCATGGGTCTGCCTGGTCTGAATGTGATGCCCTCGCGGGGATCGAGTGGAGGAGCGGGTGGAGCGGCACCCAACAGTGCCGCCTCTTATGCTCGCGAACTATcccgggagcgggagcgtGACCGTGAGCTGTCCCGGGAAAGGGAACGAGAGCGCGAACTGTCCCGCCAATACGGCAGCCAATCGCGTGGCTCCAGTTCCGGTTCTGGCAGCGCTAAGTCCCTGACCGCCAGCCAAAGACCAGGCGCCGCCTCGCCCTATTCCGCCGCCCACTATGCCAAGCATCAGGCTAGCGCCTACAATAAGCGCTTCCTGGAGAGCCTGCCCGCCGGCATCGACTTCGAGGCGATTGCCAACGGGCTGCTACAGAAATCGGTGACCAAGAGTCCTCGCTTCGAGGACTTTTTCCCGGGACCAGGCCAGGACATGAGCGAGCTCTTTGCAAATCCGGATGCAAccgcagcggcggcagcagcggctgcctaTGCGCCGCCCGTGAATCCGGTGCGGGAATCGCCGCTGATGAAGAtcaagctggagcagcagcatgccGCCGAGCTGCCACACGAGGATTGA
- Protein Sequence
- MIESGGHGGWMGAAAAATGAASVAADSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSLDGGADPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEDMSAHQYANGQAHGSHYGAGSASNGYHSAAAAAKMAAQNAALAPPDAGSPLSSMTETLRRQILSQQQQHQQQQAHHHQSQAHHQQQPSHHPQQSPHGQSMNMYKSPAYLQRSEIEDQVSAAAAVAAAAAKHQHQQHQQQQQQGSERRGAENLPDLSALGLMGLPGLNVMPSRGSSGGAGGAAPNSAASYARELSRERERDRELSRERERERELSRQYGSQSRGSSSGSGSAKSLTASQRPGAASPYSAAHYAKHQASAYNKRFLESLPAGIDFEAIANGLLQKSVTKSPRFEDFFPGPGQDMSELFANPDATAAAAAAAAYAPPVNPVRESPLMKIKLEQQHAAELPHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00545891;
- 90% Identity
- iTF_00593761; iTF_00533027; iTF_00491435; iTF_00612737; iTF_00489301; iTF_00571823; iTF_00525808; iTF_00482906; iTF_00569616; iTF_00561683; iTF_00490003; iTF_00492156; iTF_00524342; iTF_00485062; iTF_00477944; iTF_00540998; iTF_00617560; iTF_00480094; iTF_00606235;
- 80% Identity
- -