Basic Information

Insect: Drosophila bipectinata
Gene Symbol: -
Assembly: GCA_018153845.1
Location: JAECYF010000041.1:19809911-19814009[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2e-05 0.0015 18.7 0.5 1 23 160 183 160 183 0.96

2 14 0.0027 0.2 12.0 2.8 2 23 232 254 228 254 0.88

3 14 0.0027 0.2 12.0 0.6 1 23 356 379 356 379 0.93

4 14 0.042 3.1 8.3 4.6 3 23 429 450 427 451 0.95

5 14 0.00028 0.021 15.1 1.1 1 23 511 534 511 534 0.92

6 14 7.1 5.3e+02 1.3 0.0 2 14 553 565 552 577 0.83

7 14 0.00017 0.013 15.8 3.1 2 23 585 607 585 607 0.97

8 14 0.023 1.8 9.1 1.5 1 23 707 730 707 741 0.94

9 14 0.0012 0.093 13.1 0.2 1 23 761 784 761 784 0.92

10 14 0.002 0.15 12.4 1.5 2 23 834 856 833 856 0.95

11 14 0.019 1.4 9.3 2.1 1 23 947 970 947 970 0.91

12 14 0.011 0.79 10.2 1.0 1 21 1022 1042 1022 1043 0.95

13 14 4.2 3.2e+02 2.0 0.1 3 23 1081 1104 1079 1104 0.78

14 14 0.82 62 4.2 1.4 1 23 1122 1146 1122 1146 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2e-05	0.0015	18.7	0.5	1	23	160	183	160	183	0.96
2	14	0.0027	0.2	12.0	2.8	2	23	232	254	228	254	0.88
3	14	0.0027	0.2	12.0	0.6	1	23	356	379	356	379	0.93
4	14	0.042	3.1	8.3	4.6	3	23	429	450	427	451	0.95
5	14	0.00028	0.021	15.1	1.1	1	23	511	534	511	534	0.92
6	14	7.1	5.3e+02	1.3	0.0	2	14	553	565	552	577	0.83
7	14	0.00017	0.013	15.8	3.1	2	23	585	607	585	607	0.97
8	14	0.023	1.8	9.1	1.5	1	23	707	730	707	741	0.94
9	14	0.0012	0.093	13.1	0.2	1	23	761	784	761	784	0.92
10	14	0.002	0.15	12.4	1.5	2	23	834	856	833	856	0.95
11	14	0.019	1.4	9.3	2.1	1	23	947	970	947	970	0.91
12	14	0.011	0.79	10.2	1.0	1	21	1022	1042	1022	1043	0.95
13	14	4.2	3.2e+02	2.0	0.1	3	23	1081	1104	1079	1104	0.78
14	14	0.82	62	4.2	1.4	1	23	1122	1146	1122	1146	0.89

Sequence Information

Coding Sequence: ATGGAAGGAATGGATCTGTGGACCTCGATGTTCTCCTCTGATTTCGATGAGGCGGAGGATGGAGTGGAGGGAGATGTTGGTCTGGAGGGGGAGGATGGCGAGCAGTACGGCAATGGAAATGGAAATTCGGATCTTTTGGATGCCGACATGGGCGATGACGACATCCTGGATGGTGAGGAAGAGGACAGGGAGGAGGAGGAGGACGAGGACGATGGTGAGGGGGAAAATAGAGGAAAAGGCTCCGATCCGGACGATGATGCCATCTTCGACTTTGAACTGCAGCCCATGATTAGCTTGTCGGAGCAGCCGGAGCAATCCTCCTCTTTGGACGACGCTGAGGCCACAATGCGAGGGCAGTCGGTGCCCGGCTCCCAGGGACGTAACCCGAATGTAGGCTATCCCCAACGGCCAACTACCTCGCAGATCAATGCCACGGATGAGCACGGAGTGCCCATCAACTATGAGCTGGGCGTTGTCTACATCTGCCCTGCCTGCGGCGCGGAGTTCCGGCAGCAGGACCACTGGAAGCGACACATGAACCAGATGCATCGGTACAACACCTTGCGCGGCCTCAACTTTTTGCCGGTGGACAAGTTGTATCATCGCTGCCAGGAGTGCCACAAGCGGATTGCGATGCACAGTCGAGAGAATCTGCTGAAGCACAAGTTCACCCACTTGCCGTACAGGTGTACCAAGTGTTACATATGCAAGCGGGAATACAAATACAGGCAAGATCTTATGGTGCACTTGAGGTTAGTGCACTGCGAGGAAGTCGTGGCCATGATGCGGGGCGGCTACAATGCAGCTGGCCGAAAGACCCGGGTCCGGGAGTCCCGCACCGAACAATTGCAGAGGGAGGAGGCCTTGCGCGAGGACGGAGAGTTGGATCGCATTGAGGTGCGCAACGAGGTGCTCGAACCGGACGCCGATGAGTCGAGTGTTTTGGAGCATTCAAAGCAGTCACTAGTCGCAGAGGAGGTACCTCCTGCCAGCAGGAAGAAGAGACCCGAGGAGGAGGGCGATGAACTAATACTCGCTGCAGAGCTGTGCGAGGACTACATTCATTTCATGTGTCCGGATTGCGGTTACGAGTGCGACAACCTCAGGCAGTGGCGCCAGCACATCGAGTTTGTTCACGACTTTGTCAGCAGGCGGGGACTTAACTTCCGGAGCAGTGACATGCAGATGCAGTGCCTCGAATGTAAAAAGATTGTCTCCCCCAACACCATTAAAGTATTGCGAGCGCACAAGTTCAGTCATTTATCGCATCCGGAGTGGATGCACTGCAAGCTCTGCTATAAGGGCTTCTCGGACCACGACGCGATGGTGAAACATCTGCTGAAGGAGCACCACCTGGACACTCTAATGCCAGAGCGAACCGGCCAAGCAGAGGACGGAGAATTCGATGGCGGTGGCAGAAAAGGAGAAGGAAACGGGGATGCATTGGACGACGAGTCGCCCTACTTCGCGGATGCGCCTAGACGCGGTGGACGCATCAGTAGCGACGACATGTACGAGCCCTTTATAGACTATCTGTGCCCGCAGTGCGGCAAGGAGTTCCGCGAAAAGAAACACTGGCGCACCCATGTGGTCATGATGCACGGAATGAACGACCTGTCGAAGCTGAACTTCAATGTGATAGACGAAAGAAAGCTGAAGTGCCTCGAGTGCGACAAAATCATTACCAATGCCTATGGCATCCAGAATGCGCAGCAGCACAGGATCACCCACTTGCCGTTCAAGGCCTACGCCAGGTGCACCAAGTGCCACAAGTCATACACGGACAGAAAAGGTCTGGTCAAGCATCTGGCCACCTACCATCGCATCAACGACATGCCACGCAGATCGACAGGCGGTAGTTTGGGAGGGGATGCTGGTGGCGGGGGAGACTCGCTTCCGATGCCCCAGGCTCCGAAGCAGCCTCGCAAGCAGATCGTCACGGTGGCCAATGAGACTTACGAGATCATCTACCTGGACGACCATGAGCCAGTCATCGAAGAGGACAACGACTTTGGGGAGCAGATGCAGGCGGAGGAAGAGGAATTCCTCCCAGCCACGATTGCCCCGCCGTCGCCTCCAATGCTGCATCCAGCACCCGGACAAAACGATGGGCATCGCTACAAGTGCATCCACTGCGGCGAGGCCTTCGCTTCGCAGGCAGCCGTTAAGCAGCACAGAATCGATAAGCATTTCAAGATCCGCAAGAGGTTGCGCAGCCACCAGCCCACGCAGAACACGGACACGATCGCTCCCTTCCCGACGGTGGAGCAGAACTACATCTTCCTGTGCCCCTCCTGCGGCATGGAGTACAAGACCCAGTTCGAGTGGCGGCGCCACATCAACGACGTCCACAACTTCGACAAGCGCGAGTATCTGAACATGCAGCAGCTGGACAAGTACCGCTATCAGTGCACCCAGTGCCGGGACGTCGTGAGCAACTCGAAGCTCAAGGGCCTGCAGGACCACCACTTCCGCCACTTGCCATACCGCTTGTACTTGAAGTGCCTCATTTGCGGTACCTGCTACAACCACAAGCCGAACATAGCGGCGCATCTGCGAGCGCGTCACAACATCTTCGAGAGGGGGGCGCCCGTTATGGTGACCAAACCCAGCAAGCAAATGAACCGATATCGGGAGATGGACAGAGAGAAGACTTTACCTCCGTCTCCGATACCGGTTCCCGACTCTCCACCCAGCTGTTCGCCCTCCTTCTCTGGGGCTGCCATGAGTCGCACACTGAAGCCCCAGCCGGGGGCGTTGCCCGTTCGACCCGCTGGTCTAAACACCCTGGAGGATAGCATCTCGTATCACAATGCCGTGGACTTGGACTTCATCACGTACTTCTGCCCGAAGTGCAACCAGAACTTTGACTCGCACGCCTTTTGGCGAAAACACATCGTGGAGAAGCACAACTTCAACAGTCGCGAGGGCCTGAACTTCCGGCAGCTGGATAACCACCACTACCTTTGCTTGGAGTGCTACAAACGGGTGACAGTCACCCACACAAAGGGTGCTATCGGGCAGTTGCAGTCGCACAAGTTCCGCCACCTGCCCCATCGCTCCTTCAAGTGCTTGACCTGTGGCGGGGAGTTCGTGCGCAAGCAGATGTTCTTCAAGCATCTGAACCGGGACACCAATCGCTGCGACAATCATCAGCAGCGGGAGCTGGACGACGACGAGCAGGAACACGACCAGGAGCAGGAAGGAGTGGTCTCTGTCAGGTCCATGTACCAGCTAGCGTGTCCCCAGTGCGGCGATGGCTTTACCACGGTGAAGAGAACAGCATGGAAGGAGCACATCAATGTCTACCACAGTCTCACTAAGCTAGACTTGCTGCACATGATCAAGGTGGATGTGGATCGGTACCGCTGCAACGACTGCAACGAGGAGATTGGGACAAACCGACTGCGAGAGCTTCAGCACCACCGGTACCAGCATCTTCCCCACCCTGCCTATGTGCGCTGCAAGTTGTGCGACAAAAATGAAGTCGGCTCGGAATCAGGAGGCGGCAGGCTGCACAGCCTGCAAGACCTAAAACAGCACATCCTGAACAGCCACCCGGCAGCAAAGGAAAAGGAATCTATTCTAGCCAAGATCCGCGAGCATATGCAGCAGGAGGAGCAGGAAGACGTAGTGCCAACTGTAGAGGACGAGGACAACCAGACTGGTCACGATTCAGGACCATATATGCCATTGCCTCCGCACCTGCTGGATGACGGGGATGATATGGACTTTGAGGATCAGTATCTGCTGGGATAG
Protein Sequence: MEGMDLWTSMFSSDFDEAEDGVEGDVGLEGEDGEQYGNGNGNSDLLDADMGDDDILDGEEEDREEEEDEDDGEGENRGKGSDPDDDAIFDFELQPMISLSEQPEQSSSLDDAEATMRGQSVPGSQGRNPNVGYPQRPTTSQINATDEHGVPINYELGVVYICPACGAEFRQQDHWKRHMNQMHRYNTLRGLNFLPVDKLYHRCQECHKRIAMHSRENLLKHKFTHLPYRCTKCYICKREYKYRQDLMVHLRLVHCEEVVAMMRGGYNAAGRKTRVRESRTEQLQREEALREDGELDRIEVRNEVLEPDADESSVLEHSKQSLVAEEVPPASRKKRPEEEGDELILAAELCEDYIHFMCPDCGYECDNLRQWRQHIEFVHDFVSRRGLNFRSSDMQMQCLECKKIVSPNTIKVLRAHKFSHLSHPEWMHCKLCYKGFSDHDAMVKHLLKEHHLDTLMPERTGQAEDGEFDGGGRKGEGNGDALDDESPYFADAPRRGGRISSDDMYEPFIDYLCPQCGKEFREKKHWRTHVVMMHGMNDLSKLNFNVIDERKLKCLECDKIITNAYGIQNAQQHRITHLPFKAYARCTKCHKSYTDRKGLVKHLATYHRINDMPRRSTGGSLGGDAGGGGDSLPMPQAPKQPRKQIVTVANETYEIIYLDDHEPVIEEDNDFGEQMQAEEEEFLPATIAPPSPPMLHPAPGQNDGHRYKCIHCGEAFASQAAVKQHRIDKHFKIRKRLRSHQPTQNTDTIAPFPTVEQNYIFLCPSCGMEYKTQFEWRRHINDVHNFDKREYLNMQQLDKYRYQCTQCRDVVSNSKLKGLQDHHFRHLPYRLYLKCLICGTCYNHKPNIAAHLRARHNIFERGAPVMVTKPSKQMNRYREMDREKTLPPSPIPVPDSPPSCSPSFSGAAMSRTLKPQPGALPVRPAGLNTLEDSISYHNAVDLDFITYFCPKCNQNFDSHAFWRKHIVEKHNFNSREGLNFRQLDNHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPHRSFKCLTCGGEFVRKQMFFKHLNRDTNRCDNHQQRELDDDEQEHDQEQEGVVSVRSMYQLACPQCGDGFTTVKRTAWKEHINVYHSLTKLDLLHMIKVDVDRYRCNDCNEEIGTNRLRELQHHRYQHLPHPAYVRCKLCDKNEVGSESGGGRLHSLQDLKQHILNSHPAAKEKESILAKIREHMQQEEQEDVVPTVEDEDNQTGHDSGPYMPLPPHLLDDGDDMDFEDQYLLG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00615746;
90% Identity: iTF_00566370; iTF_00539244;
80% Identity: -