Basic Information

Insect: Drosophila parabipectinata
Gene Symbol: -
Assembly: GCA_018153455.1
Location: JAECYA010000178.1:6602424-6606510[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2e-05 0.0015 18.7 0.5 1 23 154 177 154 177 0.96

2 14 0.0027 0.2 12.0 2.8 2 23 226 248 222 248 0.88

3 14 0.0027 0.2 12.0 0.6 1 23 350 373 350 373 0.93

4 14 0.042 3.2 8.3 4.6 3 23 423 444 421 445 0.95

5 14 0.00029 0.021 15.1 1.1 1 23 505 528 505 528 0.92

6 14 7.1 5.3e+02 1.3 0.0 2 14 547 559 546 571 0.83

7 14 0.00017 0.013 15.8 3.1 2 23 579 601 579 601 0.97

8 14 0.024 1.8 9.1 1.5 1 23 703 726 703 737 0.94

9 14 0.0012 0.093 13.1 0.2 1 23 757 780 757 780 0.92

10 14 0.002 0.15 12.4 1.5 2 23 830 852 829 852 0.95

11 14 0.019 1.4 9.3 2.1 1 23 943 966 943 966 0.91

12 14 0.011 0.79 10.2 1.0 1 21 1018 1038 1018 1039 0.95

13 14 4.3 3.2e+02 2.0 0.1 3 23 1077 1100 1075 1100 0.78

14 14 0.83 62 4.2 1.4 1 23 1118 1142 1118 1142 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2e-05	0.0015	18.7	0.5	1	23	154	177	154	177	0.96
2	14	0.0027	0.2	12.0	2.8	2	23	226	248	222	248	0.88
3	14	0.0027	0.2	12.0	0.6	1	23	350	373	350	373	0.93
4	14	0.042	3.2	8.3	4.6	3	23	423	444	421	445	0.95
5	14	0.00029	0.021	15.1	1.1	1	23	505	528	505	528	0.92
6	14	7.1	5.3e+02	1.3	0.0	2	14	547	559	546	571	0.83
7	14	0.00017	0.013	15.8	3.1	2	23	579	601	579	601	0.97
8	14	0.024	1.8	9.1	1.5	1	23	703	726	703	737	0.94
9	14	0.0012	0.093	13.1	0.2	1	23	757	780	757	780	0.92
10	14	0.002	0.15	12.4	1.5	2	23	830	852	829	852	0.95
11	14	0.019	1.4	9.3	2.1	1	23	943	966	943	966	0.91
12	14	0.011	0.79	10.2	1.0	1	21	1018	1038	1018	1039	0.95
13	14	4.3	3.2e+02	2.0	0.1	3	23	1077	1100	1075	1100	0.78
14	14	0.83	62	4.2	1.4	1	23	1118	1142	1118	1142	0.89

Sequence Information

Coding Sequence: ATGTTCTCTTCTGATTTCGATGAGGCGGAGGATGGGGTGGAGGGAGAAGTTGGTCTGGAGGGGGAGGATGGCGAGCAGTACGGCAATGGAAATGGAAATTCGGATCTTTTGGATGCCGACATGGGCGATGACGACATCCTGGATGGTGAGGAAGAGGATAGGGAGGAGGAGGACGAGGACGAGGACGACGGTGAGGGGGAAAATAGAGGAAAAGGCTCCGGTCCCGATCCGGACGATGATGCCATCTTCGACTTTGAACTGCAGCCCATGATTTGCTTGTCGGAGCAGCCGGAGCAATCGTCCTCTTTGGACGACGCTGAGGCCACAATGCGAGGGCAGTCGGTGCCCGGCTCCCAGGGACGTAATCCGAATGTAGGCTATCCCCAGCGGCCAACTACCTCGCAGATCAATGCCACGGACGAGCACGGAGTGCCCATCAACTACGAGCTGGGCGTCGTCTACATCTGCCCTGCCTGCGGCGCGGAGTTCCGGCAGCAGGATCACTGGAAGCGACACATGAACCAGATGCACCGGTACAACACCTTGCGCGGCCTCAACTTTCTGCCGGTGGACAAGCTGTATCATCGCTGCCAGGAGTGCCACAAGCGGATAGCGATGCACAGTCGGGAGAATCTGCTGAAGCACAAGTTTACCCACTTGCCGTACAGGTGTACCAAGTGTTACATATGCAAGCGGGAATACAAATACAGGCAAGATCTTATGGTGCACTTGAGGTTAGTGCACTGCGAGGAAGTCGTGGCCATGATGCGGGGCGGCTACAATGCAGCTGGCCGAAAGACCCGGGTCCGGGAGTCCCGCACCGAACAATTGCAGAGGGAGGAGGCCTTGCGCGAGGACGGCGAGTTGGATCGCATTGAGGTGCGCAACGAGGTGCTCGAACCGGACGCCGATGAGTCGAGTGTTTTGGAGCATTCAAAGCAGTCACTAGTCGCAGAGGAGGTACCTCCTGCCAGCAGGAAGAAGAGACCCGAGAAGGAGGGCGATGAACTAATACTTGCTGCAGAGCTGTGCGAGGACTACATTCATTTCATGTGTCCCGATTGCGGCTACGAGTGCGACAACCTCAGGCAGTGGCGCCAGCACATCGAGTTTGTTCACGACTTTGTGAGCAGGCGGGGACTAAACTTCCGAAGCTGTGACATGCAGATGCAGTGCCTCGAATGTAAAAAGATTGTAAGCCCGAACACCATTAAAGTATTGCGAGCGCACAAGTTCAGTCATCTATCGCATCCGGAGTGGATGCACTGCAAGCTCTGCTATAAGGGCTTCTCGGACCACGACGCGATGGTGAAACATCTGCTGAAGGAGCACCACCTGGACACTCTAATGCCAGAGCGAACCGGCCAGGCAGAGGACGGAGAATTCGATGGCGGTGGCAGAAAAGGAGAAGGAAACGGGGATGCATTGGACGACGAGTCGCCCTACTTCGCGGATGCGCCTAGACGCGGGGGACGCATCAGTAGCGACGACATGTATGAGCCCTTTATTGACTATCTGTGCCCGCAGTGCGGCAAAGAGTTCCGCGAAAAGAAGCACTGGCGCACCCACGTGGTCATGATGCACGGAATGAACGACCTGTCGAAGCTGAACTTCAATGTGATAGACGAAAGGAAGCTGAAGTGCCTCGAGTGCGACAAAATCATCACCAATGCCTATGGCATCCAGAATGCGCAGCAGCACAGGATCACCCATTTGCCGTTCAAGGCCTACGCCAGGTGCACCAAGTGCCACAAGTCATACACGGACCGGAAGGGTCTGGTCAAGCATCTGGCCACCTACCATCGCATCAACGACATGCCACGCAGATCGACTGGCGGAAGTCTGGGAGGAGATGCTGGTGGCGGGGGAGATCAGCTTCCGTTGCCCCCGGCTCAGAAGCAGCCTCGCAAACAGATCGTCACGGTGGCCAATGAGACATACGAGATCATCTACCTGGACGACCATGAGCCAGTCATTGAAGAGGAGAACGACTTCGGGGAGCAGATGCAGGCGGAGGAAGAGGAATTCCTTCCAGCCACGATCGCCCCGCCGTCGCCTCCAATGCTGCATCCAGCACCCGGACACGGGCAAAACGATGGACATCGCTACAAGTGCATCCACTGCGGCGAGGCCTTCGCTTCCCAGGCAGCCGTTAAGCAGCACAGAATCGATAAGCACTTCAAGATCCGCAAGAGGTTGCGCAGCCACCAGCCCACCCAGAACTCGGACACGATCGCTCCCTTCCCGACGGTGGAGCAGAACTACATCTTCCTGTGCCCCTCCTGCGGTATGGAGTACAAGACCCAGTTCGAGTGGCGGCGCCACATCAACGACGTCCACAACTTCGACAAGCGCGAGTATCTGAACATGCAGCAGCTGGACAAGTACCGCTATCAGTGCACCCAGTGCCGGGACGTCGTGAGCAACTCGAAGCTCAAGGGCCTGCAGGACCACCACTTCCGCCACTTGCCGTACCGCTTGTACTTGAAGTGCCTCATCTGCGGTACCTGCTACAACCACAAGCCGAACATAGCGGCGCATCTGCGAGCGCGTCACAACATCTTCGAGAGGGGGGCGCCCGTGATGGTGACCAAACCGAGCAAGCAAATTAACCGCTATCGGGAGGTCGACAAAGAGAAGACTCTACCTCCGTCTCCGATACCGGTGCCCGATTCTCCACCCAGCTGTTCGCCCTCCTCCTCTGGGGCTGCCATGAGTCGCACTTTGAAGCCCCAGCCGGGGGCGTTGCCCGTTCGACCCGCTGGTCTAAACACCCTGGAGGATAGCATCTCGTATCACAATGCCGTGGACTTGGACTTCATCACGTACTTCTGCCCGAAGTGCAATCAGAACTTTGACTCGCACGCCTTTTGGCGAAAACACATCGTGGAGAAGCACAACTTCAACAGTCGCGAGGGCCTGAACTTCCGGCAGCTGGATAACCACCACTACCTATGCCTGGAGTGCTACAAACGGGTGACAGTCACCCACACAAAGGGGGCCATCGGCCAGTTGCAGTCGCACAAGTTCCGTCACCTGCCCCATCGCTCCTTCAAGTGCTTGACCTGCGGTGGGGAGTTCGTGCGCAAGCAGATGTTCTTCAAGCATCTGAATCGGGACACCAATCGCTGCGACAATCATCAGCAGCGGGAGCTGGATGACGACGAGCAGGAACACGACCAGGAGCAGGAAGGAGTGGTGCCCGTGCGGTCCATGTACCAGCTGGCGTGTCCCCAGTGCGGCGATGGTTTCACCACCGTGAAGAGAACAGCATGGAAGGAGCACATCAATGTCTACCACAGTCTCACCAAGCTAGACTTGCTGCACATGATCAAGGTGGACGTGGATCGGTACCGCTGCAATGACTGCAATGAGGAGATTGGGACAAACCGACTGCGAGAGCTTCAGCACCACCGCTACCAGCATCTTCCCCACCCTGCCTATGTGCGCTGCAAGTTGTGCGACAAAAATGAAGTCAGCTCGGAATCAGGAGGCGGCAGGCTGCACAGCCTGCAAGACCTAAAACAGCACATCCTGAACAGCCACCCGGGAGCAAAGGAAAAGGAGTCTATTCTAGCCAAGATCCGCGAGCATATGCAGCAGGAGGAGCAGGAAGACGTAGTGCCAACTGTAGAGGATGAAGACAACCAGACTGGTCACGATTCAGGGCCATATATGCCATTGCCCCCGCACTTGCTGGATGACGGGGATGATATGGACTTTGAGGATCAGTATCTGCTGGGATAG
Protein Sequence: MFSSDFDEAEDGVEGEVGLEGEDGEQYGNGNGNSDLLDADMGDDDILDGEEEDREEEDEDEDDGEGENRGKGSGPDPDDDAIFDFELQPMICLSEQPEQSSSLDDAEATMRGQSVPGSQGRNPNVGYPQRPTTSQINATDEHGVPINYELGVVYICPACGAEFRQQDHWKRHMNQMHRYNTLRGLNFLPVDKLYHRCQECHKRIAMHSRENLLKHKFTHLPYRCTKCYICKREYKYRQDLMVHLRLVHCEEVVAMMRGGYNAAGRKTRVRESRTEQLQREEALREDGELDRIEVRNEVLEPDADESSVLEHSKQSLVAEEVPPASRKKRPEKEGDELILAAELCEDYIHFMCPDCGYECDNLRQWRQHIEFVHDFVSRRGLNFRSCDMQMQCLECKKIVSPNTIKVLRAHKFSHLSHPEWMHCKLCYKGFSDHDAMVKHLLKEHHLDTLMPERTGQAEDGEFDGGGRKGEGNGDALDDESPYFADAPRRGGRISSDDMYEPFIDYLCPQCGKEFREKKHWRTHVVMMHGMNDLSKLNFNVIDERKLKCLECDKIITNAYGIQNAQQHRITHLPFKAYARCTKCHKSYTDRKGLVKHLATYHRINDMPRRSTGGSLGGDAGGGGDQLPLPPAQKQPRKQIVTVANETYEIIYLDDHEPVIEEENDFGEQMQAEEEEFLPATIAPPSPPMLHPAPGHGQNDGHRYKCIHCGEAFASQAAVKQHRIDKHFKIRKRLRSHQPTQNSDTIAPFPTVEQNYIFLCPSCGMEYKTQFEWRRHINDVHNFDKREYLNMQQLDKYRYQCTQCRDVVSNSKLKGLQDHHFRHLPYRLYLKCLICGTCYNHKPNIAAHLRARHNIFERGAPVMVTKPSKQINRYREVDKEKTLPPSPIPVPDSPPSCSPSSSGAAMSRTLKPQPGALPVRPAGLNTLEDSISYHNAVDLDFITYFCPKCNQNFDSHAFWRKHIVEKHNFNSREGLNFRQLDNHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPHRSFKCLTCGGEFVRKQMFFKHLNRDTNRCDNHQQRELDDDEQEHDQEQEGVVPVRSMYQLACPQCGDGFTTVKRTAWKEHINVYHSLTKLDLLHMIKVDVDRYRCNDCNEEIGTNRLRELQHHRYQHLPHPAYVRCKLCDKNEVSSESGGGRLHSLQDLKQHILNSHPGAKEKESILAKIREHMQQEEQEDVVPTVEDEDNQTGHDSGPYMPLPPHLLDDGDDMDFEDQYLLG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00615746;
90% Identity: iTF_00488298;
80% Identity: -