Basic Information

Insect: Drosophila bipectinata
Gene Symbol: -
Assembly: GCA_018153845.1
Location: JAECYF010000002.1:12824172-12829788[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0032 0.24 11.8 0.3 1 23 139 161 139 161 0.97

2 14 3.3e-05 0.0025 18.0 2.5 1 23 367 389 367 389 0.98

3 14 7.4 5.6e+02 1.2 1.9 1 23 395 418 395 419 0.91

4 14 0.21 16 6.0 0.3 1 23 438 461 438 461 0.93

5 14 0.00093 0.07 13.5 1.9 3 23 710 730 709 730 0.92

6 14 0.037 2.8 8.4 1.4 1 23 736 759 736 759 0.98

7 14 1.4 1e+02 3.5 0.9 2 23 796 817 795 818 0.91

8 14 0.0011 0.084 13.2 0.4 1 23 839 862 839 862 0.97

9 14 0.0013 0.1 13.0 0.3 1 23 1064 1086 1064 1086 0.98

10 14 0.005 0.38 11.2 5.1 1 23 1098 1120 1098 1120 0.98

11 14 0.00021 0.016 15.5 0.6 2 23 1126 1148 1125 1148 0.92

12 14 0.0026 0.19 12.1 5.2 1 23 1154 1179 1154 1179 0.95

13 14 0.0093 0.7 10.3 0.7 1 23 1184 1206 1184 1206 0.97

14 14 0.32 24 5.5 3.7 1 23 1212 1235 1212 1235 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0032	0.24	11.8	0.3	1	23	139	161	139	161	0.97
2	14	3.3e-05	0.0025	18.0	2.5	1	23	367	389	367	389	0.98
3	14	7.4	5.6e+02	1.2	1.9	1	23	395	418	395	419	0.91
4	14	0.21	16	6.0	0.3	1	23	438	461	438	461	0.93
5	14	0.00093	0.07	13.5	1.9	3	23	710	730	709	730	0.92
6	14	0.037	2.8	8.4	1.4	1	23	736	759	736	759	0.98
7	14	1.4	1e+02	3.5	0.9	2	23	796	817	795	818	0.91
8	14	0.0011	0.084	13.2	0.4	1	23	839	862	839	862	0.97
9	14	0.0013	0.1	13.0	0.3	1	23	1064	1086	1064	1086	0.98
10	14	0.005	0.38	11.2	5.1	1	23	1098	1120	1098	1120	0.98
11	14	0.00021	0.016	15.5	0.6	2	23	1126	1148	1125	1148	0.92
12	14	0.0026	0.19	12.1	5.2	1	23	1154	1179	1154	1179	0.95
13	14	0.0093	0.7	10.3	0.7	1	23	1184	1206	1184	1206	0.97
14	14	0.32	24	5.5	3.7	1	23	1212	1235	1212	1235	0.93

Sequence Information

Coding Sequence: ATGGCGTTGAACAAAAGGTTGAGCTCCCAAGCGGACGGAGCGGACTTCAAGTTTGCGTGTCGCTGCTGTCTGAAGATGAACACCGAGTTCCTTAAGCTGGACTCTGTGACGGTGGCTAGCAGTCTGAACCCGGCGGAGGCAAAGGATAAGATTCCGCTAATGCGTTGCCTGCTGTACTGTACACGCAGTGAAAACCCGGCCGAGCTTCCCCAGTACATCTGCATCGAATGCAGTCAGAGCCTCCAGGTAGCCTACTACTTCCTCCAGAACGCAGTTCGCGCGCATGAATTCCTCTGTCGCAAATTGTGTCCGTATAAGGCTTTCAAAACTCGGGTCAACGGTTCCCTAGGCCAGGAGCTGGAACAACATTTGGAGAGCGATACTGAGAGGACGAAGCCATTGAAAACAATGCGCCACGAGTGCCAGGTGTGTGGGGTCATCGTTTACAATCGCCTCGAGCTCAAGCAGCACATCCGCCTCCATGCAGATGGACTCGCTTATCACTGCAAGATGTGCAGCTTTACAACGCTAAAGCAGCGTCTGTTGCACGATCACTATCGTTCAACTCACAACCAAAACGCTACCCAGGCCGAGGAGCTTTCCAAAGTGAAGCTTGAGCCAATAAAAAAGGAAGATGAGGTAAAGGTGTGCACAATGGAGGATATGGAGCTTTTGATACCCACGGTACTAACGCCGGAGGACTACTCAGCGGTGCCGATCGATGCGGACCAGTTGCGAGATATTGAACAGCAGCTGGCGGCCACAATGGGCGAGGCTGCGCCGGGGGTGGACACTCTAACCTCCACATTACCGCCCATGGATACCCAAAACGTGAGCATCGGCACCGAGTATCTTGTCTTGCCAGATGGATCGCTGCAGCAGGTCAACGGAGGCGGCGTGGTCATTGAGTATATTGACGATAGCAAGCCCCCAAATGTTAATCCCCATCCCCCTTCCATCAACATAAACCTGCAGAATCTTCTTGGGGGTGGCGACGATGGGATGGATATTGATGTCAATGAGCTGATTGTGGAAGATGCACTTCCGCAAATAAAAGTAACGCCAAAGCCAGCGCCGCTTGGATCTCCAGTGCACAAACACAAATGCAAATTGTGCCCCAAAACATTCGCCACTTTGGCACGTCTAAAGTCTCATCAGTTGACGCACAGCCATTTGCCGAAGTTTTTCTGCGATCAGTGCGAATACTACTCACTGCGCAGCGCCGATCTCATCCAGCACTATCAGAACCAACACCACCGGGCGGAGGGTGTTGCGGAGAAAACGGACGGTTTGAAACAGGAGGTTCGCACATACTCTTGCGACATGTGCCTCTATGAGACGAGTACAGTCAACGAACTGCGTGTCCACTACGCACAGAGTCATACGGTTCAGCCGACGGATGTGGAGCTACGTCCCAGCTGGACGGCCGATAATAGTAATGCTGTCAAAGATGCTCCTGTAGACGAAAAGCCGCCGGCAACTCTACCGCCATTGACAAACTCTTCCGAAAACCACGTACCCATCAAATGTCCTCCTGCAGTTGCAGACACACAACCGGGGCAATTTCAGCAGCTGCCGGTAGAGGCAACGACATCCGTTGCCCAAACCGAGGTCATCTTTGCGGCCACTTCCAATTCCATTAACGCAGTTCATGCGCCACCAGTACAAGAAGTTGCCGTAACCACTGACGGGGCTCCATGCAGTTCATTCGAAATCTTTCCAGAAATCTCCCAAGGCAATTTGTCGGCTAACGAAACCGTACCGCAGGCGCCGGCAAATACTTCCAATCTAAATATTTCCATGTTCGGTGACATGCAGGATTTTATTGACAACACCGACGTGGCTGCCATATGCACCATTCCAGCCGATGATATGCCAGTGGTAGATGGCGACGACATCGTCATTGATAATAACAATATCAGCCTGGACTTTGATGCCGAAAATCTGTTCGAGGACTTTGAAGAAGACGAGGAGGTGGCGGCCGAGGAGGAGGACGATGAAGGTGACAACGAGGACGAGAACGAAAATAATGATGCAGCCACTGATCAGAATCTGCTGCTAACCAGTGACGATGACGATGTCGACGATTTCGATGATGAGCAATCGAAGCATCTTCAGAAGCCTTATTGTATTTATTGCAACAAAAAATTCACCAGCCAGTACAAATTTGAGAATCACATGTTTGTTCATCGGGGTCTGGCTCCCTATCGCTGCGAGTTGTGCACCAATCTCTACAACATGAAGCGACTCCTGATCAGACACTACAAAACCGTTCACAAGCGAATGCCCACAAGGGATATGGTCCAAGCCAAAGGTGACAAGGTTACGGTGGCACGATCGAGCCTTGAAAAGATCGAAACTAACTTCAACAAGAATCCGATGCTCATGTGTGCAAAGTGTCCGTTCGAGTGTGAGCCGGAGGGAGAGATGCGAAAGCATTTAAATGCCCACCACGGCATCAACGATGGAGTATCCGTTCATGCAAACGAAGTGTTTATCATACGCAAACTGCCCTTTGAGTGCCCGCGATGCATTCGCTCGTTTGCGGCCAAGAGCACCCTGATTCGTCATCTGCAGCGAAGCCATTTGGTGGAGACGATCATCGAGATGCCATCATCACAAGCAACAGCCAGTTCGGCAGCCACAACCACAACAACGACGGCCACGGCGACCACATCCGGGCCGGCCAGCAGCACTCAGGATGGAGATAGGATGACAGTATCGTCGACTGCTGCTAAAAGTGGCGGTGGCGGTGGCAATGGGGAATGCGAGGGGACAGGCAAAGATGATGGAGACCCAACAGGAGAAGGAGCATCAATTAAAGCGGAATTAATACAACCCAAAGAGGAATTCGATGTCGTTTCATTCGGGACCTCCGCTGCCCCAACAGCCGGCATATCATCAGCAACGGCAGCCAATCCTGGAACCGCAGTAAAAACATCAACATCGCCCATTACAACCACAGCCTCATCCACATCGGCATCCTTCTCGACACTTTACCCCACGCCCACGCCATTCGACTTGGACTGTGACCTGATATCCGATGTCCCAGTCGAGCAAACCACACCCACGCCCACTACAAACTCTAATCCCAGCGCACTTTTAAATGGCAGTGATAAGTTTCTGTCAAGTCTGCCCCAAGCAGAGAAATATGTACCATCCAATTCCCGACTCCCACGCACCCCATCATACAAGTGCAAGTTGTGCAGCGAGACATTCGACGAGCTGGGAAAGCTGGTTAAGCACGAGATGGTGCACTCGAGTACGGAATCTAATCGGTATAACTATCAACACAAGTGCACTATTTGCAACACCAGCTACCGCAATCTGACTTTGTTGAAGTTTCACATGAAACGGCACACAAATCGCAAGATTCAGTGCAAGCTATGCCCAAAGTCTTTCGCAACCAACCAGGAGCTGGATCGTCACTCGAAGGCCAAGCATATGAGACCGAAGACGTTCCGGTGCACGTTGAACAACTGCAACAAGACGTTCGCATACAAGCACCACATGGTGCGGCATCAGAATGCGACCCACTTGCAGACGCGGCACGTGTGCACCATATGCGACAAGGAGATGATGACCAGTCTACTACTGCGGAACCACATGTCCGTACACAAAAGTGGAACACTGTATAAGTGTCCACATTGTGATCGACAATATTTACGTCGGGGACGGATTTGTTCACATATTCTGAAAGTTCATAAAATCAAAGCAACAGAGGCGGAATTAGCCGAAATCTTTAAGGCCAGCTCGAATGGCACGCATGAATTAAAGTCGAGGAGCCGCCAGGGACAGCTAGTGCGGCGCAAAGGATTGGATATCAAAACTGAAGTCAAAGAAGAACCGGGTCTTCAATCATCTGCAGAGGATATATAA
Protein Sequence: MALNKRLSSQADGADFKFACRCCLKMNTEFLKLDSVTVASSLNPAEAKDKIPLMRCLLYCTRSENPAELPQYICIECSQSLQVAYYFLQNAVRAHEFLCRKLCPYKAFKTRVNGSLGQELEQHLESDTERTKPLKTMRHECQVCGVIVYNRLELKQHIRLHADGLAYHCKMCSFTTLKQRLLHDHYRSTHNQNATQAEELSKVKLEPIKKEDEVKVCTMEDMELLIPTVLTPEDYSAVPIDADQLRDIEQQLAATMGEAAPGVDTLTSTLPPMDTQNVSIGTEYLVLPDGSLQQVNGGGVVIEYIDDSKPPNVNPHPPSININLQNLLGGGDDGMDIDVNELIVEDALPQIKVTPKPAPLGSPVHKHKCKLCPKTFATLARLKSHQLTHSHLPKFFCDQCEYYSLRSADLIQHYQNQHHRAEGVAEKTDGLKQEVRTYSCDMCLYETSTVNELRVHYAQSHTVQPTDVELRPSWTADNSNAVKDAPVDEKPPATLPPLTNSSENHVPIKCPPAVADTQPGQFQQLPVEATTSVAQTEVIFAATSNSINAVHAPPVQEVAVTTDGAPCSSFEIFPEISQGNLSANETVPQAPANTSNLNISMFGDMQDFIDNTDVAAICTIPADDMPVVDGDDIVIDNNNISLDFDAENLFEDFEEDEEVAAEEEDDEGDNEDENENNDAATDQNLLLTSDDDDVDDFDDEQSKHLQKPYCIYCNKKFTSQYKFENHMFVHRGLAPYRCELCTNLYNMKRLLIRHYKTVHKRMPTRDMVQAKGDKVTVARSSLEKIETNFNKNPMLMCAKCPFECEPEGEMRKHLNAHHGINDGVSVHANEVFIIRKLPFECPRCIRSFAAKSTLIRHLQRSHLVETIIEMPSSQATASSAATTTTTTATATTSGPASSTQDGDRMTVSSTAAKSGGGGGNGECEGTGKDDGDPTGEGASIKAELIQPKEEFDVVSFGTSAAPTAGISSATAANPGTAVKTSTSPITTTASSTSASFSTLYPTPTPFDLDCDLISDVPVEQTTPTPTTNSNPSALLNGSDKFLSSLPQAEKYVPSNSRLPRTPSYKCKLCSETFDELGKLVKHEMVHSSTESNRYNYQHKCTICNTSYRNLTLLKFHMKRHTNRKIQCKLCPKSFATNQELDRHSKAKHMRPKTFRCTLNNCNKTFAYKHHMVRHQNATHLQTRHVCTICDKEMMTSLLLRNHMSVHKSGTLYKCPHCDRQYLRRGRICSHILKVHKIKATEAELAEIFKASSNGTHELKSRSRQGQLVRRKGLDIKTEVKEEPGLQSSAEDI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00615723;
90% Identity: iTF_00580219;
80% Identity: -