Dbif006098.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila bifasciata
Gene Symbol
PAXBP1
Assembly
GCA_009664405.1
Location
CM019044.1:41604195-41607768[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2e-30 1.5e-26 93.4 0.2 4 272 620 827 617 829 0.94

Sequence Information

Coding Sequence
ATGTCGCTGTTTCGCAAGCCGAAGAAAATACAGCGACGAGTGTTCTCCAGCAGTGTTGACGATGACAATGACGGGGCCACGTTGGACATGGACGCCGAGATGGAGTCggcaccgccaccgccgccgatGCTGACATTATCCGGCAAACGCGACAAGGAAAAAGTGAAGAAAACCATCAAAACGAATGATGACAACAAGCCAAAAGCTTTGCTCAGCTTTGCCGACGATGAGGATGATGGGGAGGTCTTTCAAGTGCGGAAATCGTCGAATAGCAAGAAAATAATGCGCCTAATGGACAAGGAGCGGCGCAAGAAGAAGCGCGAGGAGCGTACGGAGCACGGTAGCACGGAAAATGGTAGTACACAGCATTTAGAGTCGTCCAGTGTGTCGTCCACGGGTGCTAGTGCAACAAATTCTAGTAGATATAAAAACGCGAGCAGCGATCAgagtaaaagtaaaaaaagtGATAATCATATGATCCAAACCGAAATACGCACAGACGACTTTGTGCTCGTCGTTAAGAGATCAGAGACGCCCGAGGCTGTTCTGAATGGTCGCGCTGCGCTCTGTGCGGGTCGTAATGATATGAGCGACGATGGTGAGGATCCTTCGGATGAGGGGGGCCACAGCAAGGAGCATCATCGCTTCTCCAAGCCAGAGGCATTGAAGCAAATGCTAGAGAGTGGCTCCATACCAGATGCGGCCATGATACATGCCGCACGCAAGCGACGACAGCGAGCCAGAGAGCAGGGTGCTGGTGATTATATACCCATTGAGGAGAACAAAGAGCCGCCAAAATTAAGCACCCGCCTGCCCAACGAGGATGTCGAGGGCGATCAGTCGGACGATGAGGAGCGTGTGGATATGAGCGACATAACCGGTCGCAAGGAGCGCGAAGAGCGTCGCGAGCAGTTCTATGCCGTCGAGAATGATTCGACCGACGAAGACTCTGACCGCGAGATGAACGAGTGGGAGAACCAGCAGATCCGCAAGGGCGTCACCGGTGCCCAGCTAGTCCATGCCCAGCACGAGACTGTGCTCTCACGCTTCATGATCAAGCCGGCGGCGCCCAGCGGTGCTCTACCCCTGGAGGACAACGACCAGGTGGGCCCACAGTCAACCTCCACATTGCTGGAACAAGCCTATGCGAAGAATGCCCTCGATCGCAGCCATCTGGCCTCAGCCATGCGCAGCTCTGCGGCAAGGCCCCCCAAGAAGGACAAACCCAAGGCCACAGCACTGCGCACACCCCAGGAGATATTCACTGCCATTCAGACCCGCCTTGCTGAGATTAAGGAGCGCTCGGCGGATCATTCGGCCACCATGGCCAGAGTCAGCTTGGAGCTGAAGGAACTgagactgcagcagcaggagtgcCAGAAGAACGCCCCAACGGCGGCAGCCAAGTACAAATTCTATCAGGAGGTCAAGTGCTATGTGAACGATCTGGTGGATTGCCTGGCCGAGAAGAGCCCCGTGATCAATGAGCTGGAAAAACGCGCACTGCTGCAGTCGGGAAAGAATAATCGCTATCTGGTGAATCGCCGGCGACAGGATATCAGAGATCAGGCCAAGGAAATGGCCGAGGCATCAAAGCccatttctgctgctgtccgtCGCACACCCGAATACGAAGAACAAGTGCGACGCGCTGCCGAGCGGGAGGGACGAAGGACACGTCGTCGCTGCGAACGAGAGCGCAACGATCTCTTGTCCTCCCATTTGGATGGCATGTCCAGCGATGATGAAATCGCcgaccagcagcaggaacagtgTCTGGCTGCCACAGCGCAAACGCAAAAGGAAGCGGACGAAGCGTTTGAAGATGTCACCGATGAATTCTGTAAAGTCGAGCTCATTCTCATGAAGTTCTATGCCTGGCGGAAAACCGACATGTCCTCGTATCTGGATGCGTTTGTTAGCCTGTGTCTGCCCAAGTTACTAGCGCCACTGGTACGCCACGAGCTGCTGGTGTGGTCGCCGCTGCTGGAGGTGTATGCGGACATTGAGACAATGCGCTGGTATCAGGCTTGCATGCTGTATGCCTGCCAGGCAGATGAAACAATGGAGCAGCTAAAGAACGATCCAGATGTGAATCTAGTGCCTGCGCTCATTGATAAGATTGTGCTGCCAAAGGTTACATCTTTGGTCACAGAATGCTGGGATCCCTTGTCTACCACACAAACACTGCGACTCGTGGGCTTTATCAATCGCTTGGGTCGTGATTTTCCACTCACGGGCAGCAATAAGCAGCTCAAGAAACTCTTTGAATCGATTATGGAACGCATGCGTTTGGCATTAGAAAATGATGTGTTTATACCCATATTTCCCAAGCAAGTCCAAGAAGCCAAGACATCATTCTTTCAGCGTCAATTCTGCAGCGGCCTGAAGCTCTTTCGCAACTTTCTCAGCTGGCAGGGCATATTGGGGGACAAGTTACTGCGTGAGCTGGCCATTGGGGGTCTACTCAATCGCTATCTGCTGCTAGCACTGCGCGTCTGCTCGCCCAACGATGCCATCAACAAGGCCTATATCATAGTGAATACCCTGCCCACGGTATGGCTGCTGCCCAATAGCGAAACTCTCAAGAATTTGGAACTATTTATAATGTACATAAAACAAACATTGGACAGCTGTGATTCAAGCAATCCAGTTTTTATGCAATCCTGCGAAAAGGCCAAGCAAATGCTAATAAGACTACATAGTTATTAA
Protein Sequence
MSLFRKPKKIQRRVFSSSVDDDNDGATLDMDAEMESAPPPPPMLTLSGKRDKEKVKKTIKTNDDNKPKALLSFADDEDDGEVFQVRKSSNSKKIMRLMDKERRKKKREERTEHGSTENGSTQHLESSSVSSTGASATNSSRYKNASSDQSKSKKSDNHMIQTEIRTDDFVLVVKRSETPEAVLNGRAALCAGRNDMSDDGEDPSDEGGHSKEHHRFSKPEALKQMLESGSIPDAAMIHAARKRRQRAREQGAGDYIPIEENKEPPKLSTRLPNEDVEGDQSDDEERVDMSDITGRKEREERREQFYAVENDSTDEDSDREMNEWENQQIRKGVTGAQLVHAQHETVLSRFMIKPAAPSGALPLEDNDQVGPQSTSTLLEQAYAKNALDRSHLASAMRSSAARPPKKDKPKATALRTPQEIFTAIQTRLAEIKERSADHSATMARVSLELKELRLQQQECQKNAPTAAAKYKFYQEVKCYVNDLVDCLAEKSPVINELEKRALLQSGKNNRYLVNRRRQDIRDQAKEMAEASKPISAAVRRTPEYEEQVRRAAEREGRRTRRRCERERNDLLSSHLDGMSSDDEIADQQQEQCLAATAQTQKEADEAFEDVTDEFCKVELILMKFYAWRKTDMSSYLDAFVSLCLPKLLAPLVRHELLVWSPLLEVYADIETMRWYQACMLYACQADETMEQLKNDPDVNLVPALIDKIVLPKVTSLVTECWDPLSTTQTLRLVGFINRLGRDFPLTGSNKQLKKLFESIMERMRLALENDVFIPIFPKQVQEAKTSFFQRQFCSGLKLFRNFLSWQGILGDKLLRELAIGGLLNRYLLLALRVCSPNDAINKAYIIVNTLPTVWLLPNSETLKNLELFIMYIKQTLDSCDSSNPVFMQSCEKAKQMLIRLHSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00471604;
90% Identity
iTF_00517698; iTF_00603335; iTF_00484430; iTF_00473766; iTF_00574800; iTF_00580718; iTF_00480849; iTF_00471603; iTF_00563897; iTF_00601043; iTF_00474490; iTF_00514876;
80% Identity
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