Daff015396.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila affinis
Gene Symbol
PAXBP1
Assembly
GCA_037356375.1
Location
JAZHFB010000003.1:1379354-1382864[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.7e-24 2.6e-20 73.5 0.0 55 272 566 755 550 757 0.87

Sequence Information

Coding Sequence
ATGTCGCTGTTTCGCAAGCCGAAGAAAATACAGCGACGGGTGTTCTCCAGCAGTGTGGACGATGACAATGACGGGGCCCCGCTGGACATGGACGCCGAGATGGAGTCGGCACCGTCGCTGATATTATCCGGCAAACGTGACAAGGAAAAGTTGAAGAAAACCATCAAAACTAATGATGACAACAAGCCAAAAGCCTTGCTTAGCTTTGCCGACGATGAGGATGATGGGGAGGTCTTTCAAGTGCGGAAATCGTCGAATAGCAAGAAAATAATGCGTTTGATGGACAAGGAGCGGCGCAAGAAGAAGCGCGAGGAGCGAACGGAGCACGGCGGTAGCACGGAAAATGGTAGTACACAGCATTTAGAGTCGTCCAGTGTTACGGGTGCTTCGGCGGGTGCTACAAATTCTAGTAGATATAAAAACGCGAGCAGCGATCAgagtaaaagtaaaaaaagtGATAATCATATGATCCAAACCGAAATACGCACAGACGACTTTGTGCTTGTGGTTAAAAAATCGGAGGCACCCGAGGCTGTTCTGAATGGTCGCGCTGCCCTCTGTGCCGGGCGTGATGACATGAGCGACGATGGTGGAGATCCATCGGACGATGGCGGCCATAGTAAGGAGCATCATCGCTTCTCCAAGCCAGAGGCCTTGAAGCAAATGCTGGAGAGTGGCTCCATACCAGATGCGGCCATGATCCATGCCGCTCGCAAGCGGCGACAGCGAGCCAGAGAGCAGGGTGCCGGTGATTATATACCCATTGAGGAGACCAAAGAGCCGCCCAAGCTGAGCACTCGCCTGCCCAATGAGGATGTCGAGGGCGACCAGTCGGACGATGAGGAGCGTGTGGATATGAGCGACATAACCGGTCGCAAGGAGCGCGAAGAGCGTCGCGAGCAGTTCTATGCCGTCGAGAATGATTCGACCGATGAAGACTCTGACCGCGAGATGAACGAGTGGGAGAACCAGCAGATCCGCAAGGGCGTCACCGGTGCCCACGGTGTTCTAGCCCTGGAAGACGAAGAGACGGACCTAGTGGCCCCGCAGTCCACCTCCACACTGCTGGAACAAGCCTATGCGAAGAGCAGCAATCTGGCCTCAGCCGTACGTTCTGCGGCAAAGCCCAAAAAGGACAAACCCAAGGCCACAGCTTTGCGCACACCCCAGGAGATATTCACTGCCATTCAGACACGTCTCGCCGAGATTAAGGAGCGCTCGGCGGATCACTCGGCCACCATGGCCAGACTCAGCTTGGAGCTGAAGGaactgaagctgcagcagcaggagtgcCAGAAGAACGCCCCAACGGCGGCAGCCAAGTACAAATTCTATCAGGAGGTCAAGTGCTATGTGAACGATCTGGTGGACTGCCTGGCCGAGAAGAGTCCCGTGATCAATGAGCTGGAAAAGcgctcgctgctgcagtcgGGAAAAAATAATCGCTATCTGGTGAATCGACGGCGACAAGATATCAGAGATCAGGCCAAGGAAATGGCTGAGGCATCGAAACCAATTTCCGCTGCCGCCCGTCGCACACCAGAATACGAGGAACAACGCAACGATCTCTTAGCCTCCCATTTGGACGGCATGTCCAGCGATGATGAAATAGccgaccagcagcaggagcagagtgTGGCTGCCACCGCGCAAACGCAAAAGGAGGCGGACGACGCCTTCGAAGATGTCACCGATGAATTCTGTAAAATCGAGCTCATTCTCATGAAGTTCTATGCCTGGCGGAAGACCGACATGGCCTCGTATCTGGATGCGTTTGTCTATGCGGACATTGAGACAATGCGTTGGTATCAGGCCTGCATGCTGTATGCCTGCCAGGCAGATGAAACAATGGAGCAGCTAAAGAACGATCCAGATGTGAATCTAGTCCCCGCGCTGATTGATAAGATTGTGCTGCCAAAGGTCACATCTTTGGTCACGGAATGCTGGGATCCCTTGTCTACCACACAAACACTGCGACTCGTGGGCTTTATCAATCGCCTGGGTCGAGATTTTCCACTCACAGGCACCAATAAGCagctcaagaaactctttGAATCGATTATGGAACGCATGCGATTGGCATTGGAAAATGATGTGTTTATACCCATATTTCCCAAGCAAGTGCAAGAGGCGAAGACATCGTTCTTTCAGCGTCAATTCTGCAGCGGCCTGAAGCTCTTTCGCAACTTTCTCAGCTGGCAAGGCATCCTGGGGGACAAGCTGCTGAGGGAGCTGGCCATTGGGGGGCTACTGAACCGCTATTTGCTGCTGGCACTGCGTGTCTGCTCACCCAATGACGCCATAAACAAGGCGTACATCATAGTGAATACCCTGCCAACAGTATGGCTGCTGCCCAACAGCGAAACTCTCAAGAATTTGGAACTCTTTATAATGTATATAAAACAGACACTGGAGAGCTGTGATTCCAGCAATCCAGTTTTTATGCAATCCTGCGAAAAGGCCAAGCAAATGCTAATAAGACTACATAGTTATTAA
Protein Sequence
MSLFRKPKKIQRRVFSSSVDDDNDGAPLDMDAEMESAPSLILSGKRDKEKLKKTIKTNDDNKPKALLSFADDEDDGEVFQVRKSSNSKKIMRLMDKERRKKKREERTEHGGSTENGSTQHLESSSVTGASAGATNSSRYKNASSDQSKSKKSDNHMIQTEIRTDDFVLVVKKSEAPEAVLNGRAALCAGRDDMSDDGGDPSDDGGHSKEHHRFSKPEALKQMLESGSIPDAAMIHAARKRRQRAREQGAGDYIPIEETKEPPKLSTRLPNEDVEGDQSDDEERVDMSDITGRKEREERREQFYAVENDSTDEDSDREMNEWENQQIRKGVTGAHGVLALEDEETDLVAPQSTSTLLEQAYAKSSNLASAVRSAAKPKKDKPKATALRTPQEIFTAIQTRLAEIKERSADHSATMARLSLELKELKLQQQECQKNAPTAAAKYKFYQEVKCYVNDLVDCLAEKSPVINELEKRSLLQSGKNNRYLVNRRRQDIRDQAKEMAEASKPISAAARRTPEYEEQRNDLLASHLDGMSSDDEIADQQQEQSVAATAQTQKEADDAFEDVTDEFCKIELILMKFYAWRKTDMASYLDAFVYADIETMRWYQACMLYACQADETMEQLKNDPDVNLVPALIDKIVLPKVTSLVTECWDPLSTTQTLRLVGFINRLGRDFPLTGTNKQLKKLFESIMERMRLALENDVFIPIFPKQVQEAKTSFFQRQFCSGLKLFRNFLSWQGILGDKLLRELAIGGLLNRYLLLALRVCSPNDAINKAYIIVNTLPTVWLLPNSETLKNLELFIMYIKQTLESCDSSNPVFMQSCEKAKQMLIRLHSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00487286; iTF_00580718; iTF_00574800; iTF_00517698; iTF_00473766; iTF_00484430; iTF_00480849; iTF_00471603; iTF_00563897; iTF_00603335; iTF_00601043; iTF_00474490; iTF_00514876;
90% Identity
-
80% Identity
-