Dbas006684.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila basisetae
Gene Symbol
-
Assembly
GCA_035041595.1
Location
JAWNLB010000144.1:992579-998564[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0022 0.14 12.6 2.0 2 23 145 166 144 166 0.97
2 13 0.00014 0.0085 16.3 1.3 1 23 408 430 408 430 0.98
3 13 7.6 4.7e+02 1.4 0.8 1 23 436 459 436 459 0.88
4 13 9.5 5.8e+02 1.1 0.3 1 23 488 511 488 511 0.89
5 13 0.0043 0.26 11.7 2.1 5 23 805 823 802 823 0.92
6 13 0.049 3 8.3 1.4 1 23 829 852 829 852 0.98
7 13 7.4 4.5e+02 1.5 1.0 2 19 892 910 888 912 0.55
8 13 0.0047 0.29 11.5 0.4 1 23 932 955 932 955 0.97
9 13 0.012 0.72 10.3 0.4 1 23 1175 1198 1175 1198 0.92
10 13 0.00035 0.021 15.1 3.0 1 23 1212 1234 1212 1234 0.98
11 13 0.0016 0.098 13.0 4.0 2 23 1267 1291 1266 1291 0.90
12 13 0.094 5.7 7.5 0.2 1 23 1296 1318 1296 1318 0.96
13 13 0.0065 0.4 11.1 1.3 1 23 1324 1347 1324 1347 0.96

Sequence Information

Coding Sequence
ATGGCGCACAAACGTTTGAAAGCAGCGGACATGgaaatcaattacaaattcGCATGTCGCTGTTGCCTCAAATCCGAGGCGGAATTCTTCAAGCTGGACTCTCTTATCGACTGTGGCAACGATGAtgccaatgacaatgacaatgatgCATCGTCCACAACAAAATTGACCCTGTTGCGTTTACTGCTCTTCTGCATGCGCACCGAAAATCTACCAGAGCTGCCCCAATACATTTGCGTGGAATGCCGAAAAAGTTTGCAAATTGCCTACTATTTCATACAGAATGGTTTGCGTGCCCACGAAATACTGTGTCGCAAACTCTGTCCGGGCAAGCTGCAAACCAAACCGCGCATCAACGGACAACATTTAGCCCTAAGGATCGAGGCAAAAGCTGGCGCAACGTTGCTGGACACGCACAGGGAGAAACCcctaaaatgtaaaatatgcgGTGAGGTTATCCACAATCGCTTGGAGCTGAAACATCATCTACGAATACATtcagAGTCTCGACACCAGTGTAAATTGTGCAACTTTGTCACGCTTAAGCATCGCCTGCTACTGGAGCACTATCGCAAATCGCATGGCTTGACAACGGCCCAAATTGAGCATCAACTGAAAATACGAAGATCGCTGCACGCGGCTGCTagtacaacaagaacaaaagcTACAACAGCTGCATCTACAGAAACtcctgccgctgctgctgctgcagatgatgatgatcaggTGAAGGTGTGCACAATGGAGGACATGGAGCTGCTGATACCCACTGTGTTGACGCCCGAGGATTTCACGCATCCGCAACTAGATGCGGATCAATTGCGTGACATTGAACAGCAATTGACGAGCAGCTCGCTGAGATTGGCCGACACCACAGCTGCGCCCACGGAACCAGTGACGGCAAATGCCAGCGGAAGCAGCGCCAATATGAGCATAGGTGCAGAATTTCTGGTCATGCCCGATGGCTCGTTGCAGCAGGTGAATGATGCAGGCGTTGTCTTCGAATATATTGATGATAGTAAAAACGCGgccagcacagcaacaacaacaagcacaacgaCCAATGTGACGCTGGCGAGCCTGTTGAGTGACTCGAAAACCGATTTAACCTATGATGCAATGGACATTGATCTGAGTCCTATGGTTGTCGATAATGCCCTGCCACAGATAACAGTCAAGCCCAAGGGGCGACCAGCGACAGCGTCAACTGGAGCCctaaaacacaaatgcaagCTATGTCCCAAAGCATTTCCGACGGTGGCCCGCCTCAAATCTCACCAGCTAACGCATAGCCATTTACCTAAATTTTATTGTGATCAGTGCACATTTTATTCTCTGCGCAGCGCCGATCTCATCCAGCATTATACGAGCGAGCATAATATATGCGTTAGCGATACGAAAGCTAGTCAAGTGGAAAAGTCACCAATGCTGACGGCAATGTTAACGGATCGCAATCGCATCTTCTCCTGCGATATGTGTCTGTTTGAAACACCGAGCGGCGGTCAGCTGCGCTTGCATTACAGTGATAAGCATCTCATTGTGCCCAGTGAGATACAGCTGCGTCCCAGCTGGATCAGGGATCAGCAGGATGGCAATGTGAAGCTGAAAAGTGGCGATGCCAACACACAACCAGACATTCCACTGGGCATTAAATATCCAACCATGACGCAAcgtgcagcagccacaatggcaacaacgacggcgaaaacaacaaccatGGTGCAACAGCCGcaggcaataacaacaacaacaacggcagtgACTTCCACGGGTGGTATCAATGTTGTCGTCGATGCCAGCTCATTGTTCtatgcagcaactgctgctgaaaATGTAGTAACAACGGCTGCCACAACGACTGCAACCACggatgcaacagcaacaacaacaacgggcGCAACAGCTACAAATTCAAGCACAATTGCAATATTTCCAGAACAATgcctggcaacaacaacaacagcaaaagcagcaataacaaatcaaCAGGAGGCAAGCAATCAGGCAgtgacaacatcaacaacaacaataacaaatccCAATACTAGCACTTTTGGTGATATGCAGGAGTTCATAGATAATACAGATGTGGCAGCCATATGTACAATACCCGCCGACGATATGCCTGTGGATGGCGATGATATCGTcatcgataataataatattagtcTGGATTTTGATGCCGAAAATCTATTTGAGGAATTTGAAGATGTCGAAGTTGGCGAAGATgttgacgatgacgacgcTGAAGAGGAtgacgaggatgaggatgaggatgatgcggacaatgatgatgagaaTGATAACAATGATGCGGCTGCCGATCAAAATCTCCTGCTAACcagcgacgatgacgatgtggATGACTTTGACGACGAACAATCGAAGCATCTGCAGAAACCCTATTGCATCttttgcaacaaaaagttTACCAGCCAATATAAGTTTGAGAATCATATGTTTGTGCATCGCGGTTTGGCACCCTATCGTTGCGAGCTGTGCACCAATCTGTACAATATGAAACGTCTGCTCATACGACACTATAAAACGGTTCACAAAAAGATGCCCACGCGAGACATGGTGCAGGCCAAGGGCGACAAGGTAGCCGTGCCGTGTACGGCTATCGAaaagataaatacaaatgcgGACAAAAatcCCTTGCTGATGTGCGCCAAGTGTCCCTTTGAATGTGAGCTGGATGTGGATATGCGCAAGCATTTAAATGCCCATCATGGCATCAACGATGGCGTTTCCATGCATGCCAACGAAGTGTTTATCATACGCAAATTGCCCTATGAGTGTCCACGCTGCATTCGTTCATTTGCGGCAAAGCGAACGTTGATACGCCACTTGCAGCGCAGCCATTTGGTGGATACAATCATTGAGATGCAGGCGCTTCAATTGAAAACCAGTTCGGCGTCAACGACAACcacagcgacgacaacaaccacattgCCGAACAATGCCAGCGATGGCAATAAGGCCATAACAAATGCGGTTGTCGAGTCGTCCAATAATGGCAatatcgatgtcgatgtcgatctTGGCGATGGCGGAGATGGAAAATGCGAAGAGCAAGCATTGGTCAAGGATACAGGATCAGAAATGGAAAATTCCGATACAGAAATGGATACAAAAGGTTCACTAAAAGAAGTTATAAatgcggcagcaacaaaagacgTAAGAGAAGCACCAACTGTAGCAGATGGAAAAACAACCACTGCCACTGTAAAAACAGATGCTTctcccacaacaacaacaactacaacagattttacaccaacaacacaacaGTCTGCAGTGTCAACGCTTTTTCCAACACCCACGCCTTTTGACTTTGATCTTGACTTCATTGGCAACGTGGCACATGCCACAACGctcaagaacaacaacgatgatAGCTTCAATGTGGCATCTCTACCTCCGCCCCTATTGCTAAATGGCAGCGATAAATTGCTGACTGCTGTGCTGGAGCCGTCGCCCGTTAAGGATTTGCGTCCACGTCTGCCCCGTACCCCCATCTATGTGTGCAAGCAATGCAATCAAACGTTTGACGAGCTGGCCAAGCTGTTGCAGCACGAGCTGCAGCAACATTCCAGTGGCACGATGTCCACGCCACGCAGCAGCTATCAGCATCAGTGCAAGATATGTAATGCCTCCTATCGCACTGTGACCCTGCTCAATTATCACATGAAGCGACATGCGCCGGTCAAAGTGCCGTGCAAGGAGTTTCAGGTTAGCGCGGGATTGGAGCCCGATCATGTTCAGTCCGATCAACGTGGAAATAGTGGTCCACTCAAGTGTGGCATCGATGGCTGCCGGAAGACCTTCAATTACAAGCATCATTTAAAGCGACATCAGACCGCATCGCATACGCCTGTACAATATATTTGTCCGGAGTGCGGACGCGATATGCTGACCAGTCTGTATCTGAGGAATCACATGTCCATGCACCGGGGCACCCACTCCTACAAGTGCCCCAAGTGCGTGCGTACATATATGCGCCGTAATCCTTTCCGTAGACATGCGTTGCGGGAGCACAAATGGGAATTGACGGATGCGGAAATTGACAAAATATATTGTGAAAATGATTCAACGCCATCAATAATATTGCGCGATTTGCGGTGA
Protein Sequence
MAHKRLKAADMEINYKFACRCCLKSEAEFFKLDSLIDCGNDDANDNDNDASSTTKLTLLRLLLFCMRTENLPELPQYICVECRKSLQIAYYFIQNGLRAHEILCRKLCPGKLQTKPRINGQHLALRIEAKAGATLLDTHREKPLKCKICGEVIHNRLELKHHLRIHSESRHQCKLCNFVTLKHRLLLEHYRKSHGLTTAQIEHQLKIRRSLHAAASTTRTKATTAASTETPAAAAAADDDDQVKVCTMEDMELLIPTVLTPEDFTHPQLDADQLRDIEQQLTSSSLRLADTTAAPTEPVTANASGSSANMSIGAEFLVMPDGSLQQVNDAGVVFEYIDDSKNAASTATTTSTTTNVTLASLLSDSKTDLTYDAMDIDLSPMVVDNALPQITVKPKGRPATASTGALKHKCKLCPKAFPTVARLKSHQLTHSHLPKFYCDQCTFYSLRSADLIQHYTSEHNICVSDTKASQVEKSPMLTAMLTDRNRIFSCDMCLFETPSGGQLRLHYSDKHLIVPSEIQLRPSWIRDQQDGNVKLKSGDANTQPDIPLGIKYPTMTQRAAATMATTTAKTTTMVQQPQAITTTTTAVTSTGGINVVVDASSLFYAATAAENVVTTAATTTATTDATATTTTGATATNSSTIAIFPEQCLATTTTAKAAITNQQEASNQAVTTSTTTITNPNTSTFGDMQEFIDNTDVAAICTIPADDMPVDGDDIVIDNNNISLDFDAENLFEEFEDVEVGEDVDDDDAEEDDEDEDEDDADNDDENDNNDAAADQNLLLTSDDDDVDDFDDEQSKHLQKPYCIFCNKKFTSQYKFENHMFVHRGLAPYRCELCTNLYNMKRLLIRHYKTVHKKMPTRDMVQAKGDKVAVPCTAIEKINTNADKNPLLMCAKCPFECELDVDMRKHLNAHHGINDGVSMHANEVFIIRKLPYECPRCIRSFAAKRTLIRHLQRSHLVDTIIEMQALQLKTSSASTTTTATTTTTLPNNASDGNKAITNAVVESSNNGNIDVDVDLGDGGDGKCEEQALVKDTGSEMENSDTEMDTKGSLKEVINAAATKDVREAPTVADGKTTTATVKTDASPTTTTTTTDFTPTTQQSAVSTLFPTPTPFDFDLDFIGNVAHATTLKNNNDDSFNVASLPPPLLLNGSDKLLTAVLEPSPVKDLRPRLPRTPIYVCKQCNQTFDELAKLLQHELQQHSSGTMSTPRSSYQHQCKICNASYRTVTLLNYHMKRHAPVKVPCKEFQVSAGLEPDHVQSDQRGNSGPLKCGIDGCRKTFNYKHHLKRHQTASHTPVQYICPECGRDMLTSLYLRNHMSMHRGTHSYKCPKCVRTYMRRNPFRRHALREHKWELTDAEIDKIYCENDSTPSIILRDLR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00557462;
90% Identity
iTF_00518733;
80% Identity
-