Datr005608.2
Basic Information
- Insect
- Drosophila atroscutellata
- Gene Symbol
- -
- Assembly
- GCA_035041605.1
- Location
- JAWNLA010000093.1:3662378-3667310[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0052 0.33 11.4 2.0 2 23 145 167 144 167 0.97 2 12 5.4 3.5e+02 1.9 5.6 1 23 172 195 172 195 0.97 3 12 0.00014 0.0089 16.4 1.3 1 23 407 429 407 429 0.98 4 12 3.4 2.1e+02 2.6 0.8 1 23 435 458 435 458 0.92 5 12 0.00049 0.031 14.7 2.3 3 23 775 795 774 795 0.96 6 12 0.049 3.1 8.3 1.4 1 23 801 824 801 824 0.98 7 12 0.0031 0.2 12.1 0.7 1 23 904 927 904 927 0.97 8 12 0.012 0.75 10.3 0.4 1 23 1161 1184 1161 1184 0.92 9 12 0.00035 0.022 15.1 3.0 1 23 1198 1220 1198 1220 0.98 10 12 0.0016 0.1 13.0 4.0 2 23 1252 1276 1251 1276 0.90 11 12 0.37 24 5.6 0.3 1 23 1281 1303 1281 1303 0.95 12 12 0.0045 0.29 11.6 1.4 1 23 1309 1332 1309 1332 0.97
Sequence Information
- Coding Sequence
- ATGGcgcaaaaacatttgaaagcAGCGGACATGgaaatcaattacaaattcGCATGTCGCTGTTGCCTCAAATCCGAGGCGGAATTCTTCAAGCTGGACTCCCTCATCGACTGTGGCAACGATGATGCCAATGATAATGACAATGATGCATCGTCCACAACCAAATTGCCGCTGTTGCGTTTACTGCTCTTTTGCATGCGCACTGAAAATCTGCCCGAGCTGCCGCAATACATTTGCGTGGATTGCCGCAAAAGTTTGCAAATTGCCTACTATTTCATACAAAACGGTTTGCGTGCCCACGAAATATTGTGTCGCAAACTGTGTCCGGGCAAGCTGCAAACCAAACCGCGCATCAACGGACAACACTTAGCCCTAAGGATCGAGACAAAAGCTGGCGCAGCGTTGCTGGACACGCACAGGGAGAAACCcctaaaatgcaaaatatgcgGCGAGATTATCCACAATCGTCTGGAGCTCAAACATCATATACGAATGATGCATTCagAGTCTCGACATCAGtgtaaattgtgcaattttgtAACGCTTAATCATCGCCAGCTGCTGGAACACTATCGTAAATCGCATGGCTTGACAACAGCCCAAATTGAGCATCAGTTGAAATTACGAAAATCGCTGCAGGCGGCTGccagtgcaacaacaacaagaaaagcgaTAGCAGTTTTATCCACAgaagctcctgctgctgcggatgaCGATGGTCAGGTGAAGGTGTGCACAATGGAAGACATGGAGCTGCTGATACCCACAGTGATGAGGCCCGAGGATTTCACGTACCCACAACTGGATGCGGATCAATTGCGTGACATTGAACAGCAATTGACGAGTAGATCGCTGGGATTGCCCAACCCAACAGCTGCATTCACGGAACCAGTGACGGCAAATGCCAACGGAAGCAGTGCCAATATGAGCATAGGTGCGGAGTTTCTGGTCTTGCCGGATGGCACGTTGCAGCAGGTGAATGATGCTGGCGTTGTCTTCGAATATATTGATGATAGTAAAAATACGGCCAGCACagtcacagcaacaaccacatcgaCCAATGTGACGCTGGAGAGCCTGTTGAGTGACTCGAAAACCGATTTAACCTATGATTCAATGGCCATTAATCTGAATCACATGGCTGTCGATAATACGCTGCCACAGATAACAGTCAAGCCCAAGGCGCGACCAGTGCCAGCATCAACTGGTGCCCtgaaacacaaatgcaaactgTGCCCCAAAGCATTTCCTACGGTGGCACGCCTCAAATCTCACCAGCTAACGCATAGCCATTTACCCAAGTTCTATTGTGATCAGTGCACATATTATTCGCTGCGCAGCGCCGATCTCATCCAGCATTATACAAGCGAGCATAATGTATGCGTTAGCGACACGAAGGCTAGTCAAGTGGAGAAGTCACCAATGCTGACGGCAATGTTAACGGATCGCAATCGCATCTTCTCCTGCGATATGTGTCTGTTTGAGACGCCGAGCGGCGCTCAGCTGCGCTTGCATTACAGTGATAAGCATCTCATTGTGCCCAGTGAGATACAGCTGCGTCCCAGCTGGATCAGGGATCAGCAGGATGGCAATGCTAAACTGAAAAGTGGCGACGGCACCACAACACCAGACATTCCTCTGGGCATTAAATATCCAACCGTGACGCAgtgtgcagcagccacaacggcggcgacaacaacaagcatggTGCAAGAGCcgcaagcaataacaacaaccacaacggcAGTGACTTCAAACGGTGGCATCAATGTCGTCGTGGATGCCAGCTCTTTATtctatgcaacaacaacaacgggcgCAACATCAACAGATTCAAGCGCAAAATTTCCAGAGCAATGCCtgtcaaaaacaacaacaaccacagcaaaggcagcaacaacaaatcaacagGAAGCAAGCAGTcaggcagtggcaacagcaacagcaacaaatcccAATACTAGCACGTTTGGTGATATGCAGGAGTTTATAGATAATACAGATGTGGCAGCCATATGCACAATACCCGCCGACGATATGCCTGTGGATGGCGATGATATCGTcatcgataataataatattagtcTGGATTTTGATGCTGAAAATCTATTTGAGGAATTTGAAGATGTCGAAGTTGGCGAAGAGGTTGACGATGTCGATGCTGACGAAgatgacgaggatgaggatgaggaagatgcggataatgatgatgagaaTGATAACAATGATGCGGCTGCCGATCAAAATCTATTGCTAACtagcgacgatgacgatgtggATGACTTTGACGACGAACAATCGAAGCATCTGCAGAAACCCTATTGCGtattttgcaacaaaaagtttaCCAGCCAATACAAGTTCGAGAATCACATGTTTGTGCATCGCGGTTTGGCACCATATCGCTGTGAGCTGTGCACCAATCTGTACAATATGAAACGCCTGCTCATACGGCACTATAAAACAGTTCACAAAAAGATGCCCACGCGGGACATGGTGCAGGCCAAGGGCGACAAGGTAGACGTGCCGTGTGCGGCTATcgaaaagataaatataaatgcggGCAAAAatcCCTTGCTGATGTGCGCCAAGTGTCCCTTTGAAGGTGAGCTGGATGCGGATATGCACAAGCATTTAAATGCCCATCATGGCATCAACGATGGTGTTTCCATGCATGCCAACGAAGTGTTTATCATACGCAAACTGCCTTATGAGTGTCCACGCTGTATTCGTTCATTTGCGGCAAAGCGAACGTTGACACGCCATTTGCAGCGTAGTCATTTGGTGGATACAATCATTGAGATGCAGGCGCTGCAATTGACAACCAGTTCAGCGGCAACGACAACcacagcgacgacaacaaccacattaCCTAACAATGCCAGCGATGGCAGTACAGCCACAGCACATGCGGTTGATGAGTCGTGCAACAAGAGCAATATCGATGTTGGTCTTCGCGATGGCGGCGATAGAAAATGCGGTAAGCGAGTCAATAGCTTTgccaaaatgaatttcaattcaaattccaaatatgCCCAAAACATGTCGCAacaccaacgacaacaacaacacctttTGAATACAAACTTTGAAATGCCGACACCGGCCGGATCAGAAATGGAAAATTCCGATACAGAAATGGATACAAAAGGCGCAATAAAAGGAGTTATAAATGCGGTAGCTACAACTGGCGCAAGagaagcaacaagaaaaacaaaaagcacaacagACTTTACACCAACATCGCAACAGTCTGCAGTCTCATCGCTTTTTCCAACGCCCACGCCTTTTGACTTTGATCTTGACTTCATTGGCAACGTGGCAGATGCCACAACGctgaagaacaacaacgatgacagCTTCAATGTGGCATCTCTGCCTCCGCCTCTACTGCTAAATGGCAGCGATAAGTTGCTGACTGCCGCTCTGGAGCCGTCGCCCGTTAAGGATTTGCGTCCACGTCTGCCCCGTACCCCCATCTATGTGTGCAAGCAATGCAATCAAACGTTCGACGAGCTGGCCAAACTGTTGCAGCACGAGCTGCAGCAACATTCCAGTGGCACGATGTCCTCGCCGCGCAGCAGCTATCAGCATCAGTGCAAGATCTGTAATGCCTCCTATCGCACTGTGACCCTCCTCAATTATCACATGAAGCGACATGCGCCGGTCAAAGTGCCCTGCAAGGAGTTTCAGGTTAGCACGGAGTTGGAGCAACATGTTCCGTGCGATCATCGTGCCAATAGTGGTCCACTTAAATGTGGCATCGATGGGTGTAGGAAAACCTTCAATTACAAGCATCATTTGAAGCGACATCAGACCGCATCGCATACGCCTGTGCAGTATATTTGTTCGGTGTGCGGACGAGATATGTTGACCAGTCTGTATCTGAGGAATCACATGTCCATGCACCGGGGCACCCACTCCTACAAGTGCCCCAAGTGCGTACGCACCTATATGCGCCGTAATCCTTTCCGTCGACATGCGATGCGGGAACACAAATGGGAGTTGACGGAAGCGgaaattgataaaatatattgtgAAAATGATTCAACGCCATCAATAATATTGCGCGATTTGCGGTGA
- Protein Sequence
- MAQKHLKAADMEINYKFACRCCLKSEAEFFKLDSLIDCGNDDANDNDNDASSTTKLPLLRLLLFCMRTENLPELPQYICVDCRKSLQIAYYFIQNGLRAHEILCRKLCPGKLQTKPRINGQHLALRIETKAGAALLDTHREKPLKCKICGEIIHNRLELKHHIRMMHSESRHQCKLCNFVTLNHRQLLEHYRKSHGLTTAQIEHQLKLRKSLQAAASATTTRKAIAVLSTEAPAAADDDGQVKVCTMEDMELLIPTVMRPEDFTYPQLDADQLRDIEQQLTSRSLGLPNPTAAFTEPVTANANGSSANMSIGAEFLVLPDGTLQQVNDAGVVFEYIDDSKNTASTVTATTTSTNVTLESLLSDSKTDLTYDSMAINLNHMAVDNTLPQITVKPKARPVPASTGALKHKCKLCPKAFPTVARLKSHQLTHSHLPKFYCDQCTYYSLRSADLIQHYTSEHNVCVSDTKASQVEKSPMLTAMLTDRNRIFSCDMCLFETPSGAQLRLHYSDKHLIVPSEIQLRPSWIRDQQDGNAKLKSGDGTTTPDIPLGIKYPTVTQCAAATTAATTTSMVQEPQAITTTTTAVTSNGGINVVVDASSLFYATTTTGATSTDSSAKFPEQCLSKTTTTTAKAATTNQQEASSQAVATATATNPNTSTFGDMQEFIDNTDVAAICTIPADDMPVDGDDIVIDNNNISLDFDAENLFEEFEDVEVGEEVDDVDADEDDEDEDEEDADNDDENDNNDAAADQNLLLTSDDDDVDDFDDEQSKHLQKPYCVFCNKKFTSQYKFENHMFVHRGLAPYRCELCTNLYNMKRLLIRHYKTVHKKMPTRDMVQAKGDKVDVPCAAIEKININAGKNPLLMCAKCPFEGELDADMHKHLNAHHGINDGVSMHANEVFIIRKLPYECPRCIRSFAAKRTLTRHLQRSHLVDTIIEMQALQLTTSSAATTTTATTTTTLPNNASDGSTATAHAVDESCNKSNIDVGLRDGGDRKCGKRVNSFAKMNFNSNSKYAQNMSQHQRQQQHLLNTNFEMPTPAGSEMENSDTEMDTKGAIKGVINAVATTGAREATRKTKSTTDFTPTSQQSAVSSLFPTPTPFDFDLDFIGNVADATTLKNNNDDSFNVASLPPPLLLNGSDKLLTAALEPSPVKDLRPRLPRTPIYVCKQCNQTFDELAKLLQHELQQHSSGTMSSPRSSYQHQCKICNASYRTVTLLNYHMKRHAPVKVPCKEFQVSTELEQHVPCDHRANSGPLKCGIDGCRKTFNYKHHLKRHQTASHTPVQYICSVCGRDMLTSLYLRNHMSMHRGTHSYKCPKCVRTYMRRNPFRRHAMREHKWELTEAEIDKIYCENDSTPSIILRDLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00557462;
- 90% Identity
- iTF_00496942;
- 80% Identity
- -