Datr016311.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila atripex
Gene Symbol
RREB1
Assembly
GCA_035045925.1
Location
JAWNOP010000076.1:900144-906418[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0052 0.4 11.2 0.6 1 21 243 263 243 265 0.96
2 13 0.0003 0.023 15.2 0.2 1 23 275 297 275 297 0.98
3 13 7.2e-05 0.0056 17.1 7.3 1 23 303 325 303 325 0.98
4 13 1.9 1.4e+02 3.2 3.7 2 19 562 579 562 581 0.97
5 13 0.0075 0.58 10.8 0.1 1 23 727 749 727 749 0.97
6 13 1.1e-05 0.00085 19.7 0.7 1 23 759 781 759 781 0.99
7 13 0.00074 0.057 13.9 2.0 1 23 787 810 787 810 0.97
8 13 0.0026 0.2 12.2 2.0 1 23 1084 1107 1084 1107 0.95
9 13 7.7e-05 0.0059 17.0 0.3 2 23 1473 1494 1472 1494 0.97
10 13 0.13 10 6.9 6.3 1 23 1500 1523 1500 1523 0.97
11 13 1.5 1.1e+02 3.5 2.1 1 23 1645 1668 1645 1668 0.91
12 13 0.0075 0.58 10.8 0.5 3 23 1735 1755 1733 1755 0.96
13 13 0.0057 0.44 11.1 5.7 1 23 1761 1783 1761 1783 0.99

Sequence Information

Coding Sequence
ATGCTGgcagcacagcagcagcagcagcagcagcagcagcagcagcacaacaccagcaacaacaccaacacaaCTAACACCACAGAGAACGAGATGGAGCGCCAGAGGCGGGACTCCACCACCTCGGAATCCTCGCTGGAGCACCTGGATCTGGGGCGCACGCCCAAAAAGCTCAGCGCAGtgagcggcggcggcagcggcagtcTGGTGCTGCAGCCGACGTCGACGCCACACGATGTCGCGACAGCGACGTCGCGCAAACGTAAGCTGCGCCAGCTCCAACATCACCACCAGGACCTGCTCagcgacgaggacgaggaggaggaggacgatgcATCAGCGGCAGGGCTCCGCCCCCACGGCCGACAAAAGCAGCGACGCAACGCCTCTGCCTCGGCCAGCATCGTGCTggacggcagcggcagcgacgCCAGCTCGCTGCGCAAGAAGTTCCGTTTGAATCGCTCAGCAGCTGCGGTGGCGGCCGTCTCCAGTCTCTCGGAATCGGGATTCGTGGACACCACCGCCCACAGCGGCTACTtgggcaacaacagcagctcgGCGACAGCGACGTcgacggcagcagcaactgcagcgcaatcggccagcagcagcaacagtagcagcggcagcagcagcgccggATCCGGCGGATCATCGCCGCAAGGCGGCCTGTGCCTCTCCAGCGGCGAGTCCGGCATTGGGGCGGGGGACGAGCACATGAAGTACGTCTGCCCCATTTGCGAGGTGGTCAGTGCCACGCCCCACGAGTTCACCAATCACATTCGGTGCCACAACTACGCCAACGGGGACACCGAGAACTTCACCTGCCGCATCTGCTCCAAGGTGCTGTCGTCCGCCTCATCCCTGGACAGACACGTGCTGGTGCACACGGGCGAGCGTCCCTTCAACTGCCGCTACTGCCACCTGACCTTCACCACCAACGGGAACATGCACCGCCACATGCGCACCCACAAGCAGCATCAGGCGaaccagtcccagtcccagtctggctcccagcagcagcagcatcagcgaCGCCAGCAACAGTCACATcctgcccagcagcagcaacagctgcagcagcagcagcagcatcagcagcagcagcatcagcatctcCACCAGCAACAGAGCCTCAATCCCGCCCAGCAGTCGCTGTCGGGACGGGCGGAGAGCTACGAGAGCGACGCCAGCTGCTCCACAGACGCCTCCAGCGGGCACAGCCGCAGTCGCAGCAGCTCCTCCCTcacccacaacaacaacaacaacaactcgcAGAAGGCCAACCACAACCACAAGGACATGGAGCTGGacctggagctggaggaggaggtgaCGAAGCACCACCAGAACCGTCGCGGCCTCAAGACCACCATCAACAACAATGTCATCGAGAGCGAgcacgaggaggaggacgaggaggaggaggaccgggaccaggaccaggatcACGACGATGTCGATGAGGAGGCGGATGTGGCCATGCTGACATCCACCCCGGATGTGGCCACCCTGCTGGCCGGCGCCAGTGCCTCGGGAGCTGCCTCCCGCTCTGTTTCTCCCTCGTCGGCCGCCTCGCCGGCCCCCCTCCTCAGCTGCCCCGCCTGCGGAGCCGGGGACTTCGAGACGCTGCCATCGTTGTGCGACCACCTGGACGCCCGGCACTCGGACATCCGGGCCAAGTGCCGCGATTGCGAGGTGATCTTCGCCAGCCACCGCCAGTTGCAGGCCCACTGCTGTCGCGGCGGACTAGGACGTCCAGCTGGTGTCGGACTGCCGCCCCTGCTGGGCGCCAGCAGCTCCCCGCTCCACGGCGACGACGATgccgaggacgaggatgaTGAGGACGCGGAGCGTCGTCTGCGGCTGGAGAAGCAGCGCCTGTCCGACCAGCGCGAGGACTTCTTCCAGCAGCTGTACCTCAAGGGGAAGACCTCCGGCGAGCATCCGCCCTCGCCGATCAAGCACGAGCCGGCGGACAGCAAGGACCTGGCCGACATCCAGAGCATCCTGAACATGACCAGCTCCAGCTGCACCAGCAGCTTCCTGCGCAACTTTGAGCAGTCGGTGAACACGCCCAGCTCCAGCCAGTACAGCCTGGACGGGCGCgaccaggaggaggaggcgcaGGATGCGTTCACCTCGGAGTTCCGGCGGATGAAGTTGCGCGGCGAGTTCCCCTGCAAGCTCTGCACCGCCGTATTCCCCAATCTGCGCGCCCTCAAGGGCCACAATCGCGTCCACCTGGGTTCAGTGGGTCCGGCCGGGCCGTTCCGCTGCAACATGTGTCCCTATGCCGTCTGCGACAAGGCCGCCCTGGTGCGGCACATGCGGACCCACAACGGGGACCGGCCCTACGAGTGCGCCGTCTGCAACTACGCCTTCACCACCAAGGCCAACTGCGAGCGGCACCTGAGGAACCGGCACGGCAAGACCAGCCGGGAGGAGGTGAAGCGGGCCATCATCTACCATCCGGCGGAGGACGCCGGGTGCGGCGAGGACGGCAAGTCCCGTCTGGGCGAGGATCTGGACCTGAGCTTCCGCTCGATCAGTCCgactccgccgccgccaccaccaccactcccGGAGAGCAGCTCCCAACTGAAGCACATGCTCCTGGGCGAGAACCAGCCGGCGGGTGGATCTGTGGGAGGAGCACCTGCCCCCCAGCAGCCACTGCTGAAGATCCAGGTCAAGAGTCTCGACCAGCTGGTGGACAAGAAGCCAGGAGCCAGCCAGGAGAAGGGCTCGCCCAGCGCCGCCCTGGACTTCAGCATGGACGTGCTGGATCTCAGCAAGAAGCCCTCCAGCGGATCGGCGGCCATCACCCCGACTCCCACACCGAATCCGGCACCGCTGGTGGCTCCGCCGGGAGTGCCTGGCACCCCGGACCTGGCCGCCGCCCTGGAGCAGCACCAGTTGCTCCTcgcccagcagcagctctTCGCCGGAGCCGCTGGTGACGCCGCCTCCCAGTATGTCCAGCAGTTTTTCCGCAGCCTCATGCTGCAGTCCCAGACTCCGGGCTTCTCCTACCTCTATGGTGCCTTCATGGCCCCGCCGCCACCGCAGGCCAATCCGGAGAAGCCACCGCCGCTGGTGAGTCCGCCCGGCCGGGGCCTCAATCCCCTGCCGATGGGCGGCGTGGGCGTGCCAGTGCCGCCGGGCGGGCCCGTCAAGATGGTCATCAAGAACGGCGTGCTGATGccgaagcagaagcagcgCCGCTACCGCACCGAGCGGCCCTTCGCCTGCGAGCACTGCTCCGCCCGCTTCACCCTCCGCAGCAACATGGAGCGCCACGTGAAGCAGCAGCACCCCCAGTTCTATGCCCAGCGCCAGAGGAGCGGCCACCACGTGATGCGCGGACGTGGCGCCTCCAACGCCgcagccgctgccgccgccgccgctgctgccgccggcATGGGAGTTCCCGGCGTGTCATCTGCCGGCGTCGGCTCCGGAGCTCATCACCATCCCGGCCATGGTCATGGACACGGCCATGCCCCCATCTCGGAGCAGGTGAAGTACGCCATTCTGGCCCAGCAGCTGAAGGCCCACAAGAACACGGACTTGCTGCAGCAGGCCCTGGCCCACGGATCGAGCAGTGTGTCCGGCAATCCCCTCCTGCACTTCGGCTATCCACTGGCCACTCCGCCGCCCAGCTCGGCGCTGCACAACGGTGGCAGCGGACAGGCGGGAAACGGGGTTCCCATGTCCTCCATGGACGACGATGAGCCCAAGCTGATCATCGACGAGGACGAGAACGACAACGAcgtggaggaggtggaggacttcgaggaggacgaggaggaggaggaggaggatgagccGGAGGACGAGCCCGAGATCATTGCCGACGAGGAGCCACTGCCACgcgatgaggaggaggagggccaGCCGCAGGACAAGGACatggaggagctggagctgccgAAGCCACTCACGGAGCAACTGCCCCTCGAGGCGGCCCAGAAGACCGCCGAGACCATCCTGGAGCAGGCCATCAAGGCGGGCAAGCCGGTGACCACGCCCCCGCCTCCGCcgaaggagcagcagctggagcagATCGCTCCGCCCGCTCCCAGCTCCCTGAAGACGATGATCGCCCAGGCCGAGTCCGTGGCCAAGTCCCTCAAGGAGGTGGCCAGTTCGCCGTTCAAGGACGAGTCGCAGGACCTGGTCCCGGTGGCCAAGCTGGTGGACAACGCCACTAGCCAGAACATGAGCTTCAACAGCTACTTCCGGCCCAGCGACGTGGCCAACCACATGGAGCAGAGCGACGAGGAGGGCCTGGTCGCCTCCGGCAGCGCCTCCGAGAGCAACAACAGCGGCACCGAGGACGTCAccagcagctcctccagcagcgAGCCGAAGAAGAAGTCCGCCTACAGCCTGGCCCCCAACCGGGTCTCCTGCCCCTACTGCCAGCGCATGTTCCCGTGGAGCAGCTCCCTGCGCCGCCACATCCTCACCCACACCGGCCAGAAGCCCTTCAAGTGCTCCCACTGCCCCCTGCTCTTCACCACCAAGAGCAACTGCGACCGCCACCTGCTGCGCAAGCACGGCAACGTCGAGTCCGCCATGTCCGTCTACGTGCCCACCGAGGACGTCAGCGAGCCGATTCCCGTGCCCAAGTCCGTCGAGGAGATCGAGATGGAGGAGCAGCGCCGCCGCCAGGAGGCGGAGCGGGAGCGTGAACGCGAACTGGAGCGTGCCCGGGAGCGGGAGCTGGAGCGGGAGCGCGAACTGGAGCTGGAACGCGAGCGGGAGCTGGccgagaaggagaaggagcgcGAACGCCAGCAGCTCATCCAGAAGTTGGCTGCCCAGatggccgccgccgctgccgtggctgctgctggtCCCGGCGCCCCGGGAGTCGTCCCGCCCGGCGGACTAGACGCCCAGGCTGGCGGGGATCTGCCCTACAAGTGTCATCTCTGCGAGGGCTCCTTCGCCGACCGGCTGCAGTGCCTCGAGCACATCAAGCAGGCCCATGCCCACGAGTTCGCCCTGCTGCTCGCCAAGGGCGCCATCGAGAACGAGTCCGTGCTGGGCGAGTCCGCCTCGGGGAATCCCAGCCAGCCCCCACCAGCCAGCCACCAGCCCCATTCCGACGATGAGGCCACCAACGGCGTAGTCGGTGGGGccggtgggcgtggcaagtACCCGGACTACAGCAACCGGAAGGTGATCTGCGCCTTCTGCGTGCGCCGCTTCTGGTCCACCGAGGACCTGCGCCGCCACATGCGCACCCACTCCGGGGAGCGGCCGTTCCAGTGCGAGACCTGCCTCCGGAAGTTCACCCTCAAGCACAGCATGCTCCGGCACATGAAGAAGCACAGCGGACGCGCCCACAATGGTGACGCCCCCGGCTCCGATTGCTCCGATGATGAGCAGGTGAGCAGCAGCCCCCCAGGCACTCCGGCTCCACCAACGGCCACTtctgccaacaacaacaacagctgccacaccaacaacaataacaacaacaacaacaatacagTGAGCGCCAAGCTGGGCCTGAAGCTGCCGAAGCTGCACGAGCTGCTGGACAAGGCGACGGAGTGGCGGGCCAGCCGGCTGGCGGGGGAGCACAAGGAGAACCTGGGCGAGGCCACGGCCCCCTCGGGCTCCAGCACGGATCTGATCGGGAATCTGCTGGGGATCAGCGACCAGGGCATCCTCAACAAGCTGCTCTCCTCGGCGGACGAGGCGGCCAAGCTCCTCGGGGTGGACAACAAATAG
Protein Sequence
MLAAQQQQQQQQQQQHNTSNNTNTTNTTENEMERQRRDSTTSESSLEHLDLGRTPKKLSAVSGGGSGSLVLQPTSTPHDVATATSRKRKLRQLQHHHQDLLSDEDEEEEDDASAAGLRPHGRQKQRRNASASASIVLDGSGSDASSLRKKFRLNRSAAAVAAVSSLSESGFVDTTAHSGYLGNNSSSATATSTAAATAAQSASSSNSSSGSSSAGSGGSSPQGGLCLSSGESGIGAGDEHMKYVCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHLTFTTNGNMHRHMRTHKQHQANQSQSQSGSQQQQHQRRQQQSHPAQQQQQLQQQQQHQQQQHQHLHQQQSLNPAQQSLSGRAESYESDASCSTDASSGHSRSRSSSSLTHNNNNNNSQKANHNHKDMELDLELEEEVTKHHQNRRGLKTTINNNVIESEHEEEDEEEEDRDQDQDHDDVDEEADVAMLTSTPDVATLLAGASASGAASRSVSPSSAASPAPLLSCPACGAGDFETLPSLCDHLDARHSDIRAKCRDCEVIFASHRQLQAHCCRGGLGRPAGVGLPPLLGASSSPLHGDDDAEDEDDEDAERRLRLEKQRLSDQREDFFQQLYLKGKTSGEHPPSPIKHEPADSKDLADIQSILNMTSSSCTSSFLRNFEQSVNTPSSSQYSLDGRDQEEEAQDAFTSEFRRMKLRGEFPCKLCTAVFPNLRALKGHNRVHLGSVGPAGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSREEVKRAIIYHPAEDAGCGEDGKSRLGEDLDLSFRSISPTPPPPPPPLPESSSQLKHMLLGENQPAGGSVGGAPAPQQPLLKIQVKSLDQLVDKKPGASQEKGSPSAALDFSMDVLDLSKKPSSGSAAITPTPTPNPAPLVAPPGVPGTPDLAAALEQHQLLLAQQQLFAGAAGDAASQYVQQFFRSLMLQSQTPGFSYLYGAFMAPPPPQANPEKPPPLVSPPGRGLNPLPMGGVGVPVPPGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRGASNAAAAAAAAAAAAGMGVPGVSSAGVGSGAHHHPGHGHGHGHAPISEQVKYAILAQQLKAHKNTDLLQQALAHGSSSVSGNPLLHFGYPLATPPPSSALHNGGSGQAGNGVPMSSMDDDEPKLIIDEDENDNDVEEVEDFEEDEEEEEEDEPEDEPEIIADEEPLPRDEEEEGQPQDKDMEELELPKPLTEQLPLEAAQKTAETILEQAIKAGKPVTTPPPPPKEQQLEQIAPPAPSSLKTMIAQAESVAKSLKEVASSPFKDESQDLVPVAKLVDNATSQNMSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSSSSEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIEMEEQRRRQEAERERERELERARERELERERELELERERELAEKEKERERQQLIQKLAAQMAAAAAVAAAGPGAPGVVPPGGLDAQAGGDLPYKCHLCEGSFADRLQCLEHIKQAHAHEFALLLAKGAIENESVLGESASGNPSQPPPASHQPHSDDEATNGVVGGAGGRGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCETCLRKFTLKHSMLRHMKKHSGRAHNGDAPGSDCSDDEQVSSSPPGTPAPPTATSANNNNSCHTNNNNNNNNNTVSAKLGLKLPKLHELLDKATEWRASRLAGEHKENLGEATAPSGSSTDLIGNLLGISDQGILNKLLSSADEAAKLLGVDNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00504177;
90% Identity
iTF_00550438; iTF_00477511;
80% Identity
-