Dara007526.1
Basic Information
- Insect
- Drosophila arawakana
- Gene Symbol
- -
- Assembly
- GCA_018151165.1
- Location
- JAECWX010000239.1:8823685-8827651[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00046 0.026 14.8 0.1 1 23 169 192 169 192 0.96 2 13 0.0016 0.092 13.1 2.9 2 23 241 263 237 263 0.89 3 13 0.014 0.79 10.1 0.9 1 23 364 387 364 387 0.93 4 13 0.13 7.3 7.1 4.5 2 23 436 458 435 459 0.95 5 13 0.0035 0.2 12.0 0.5 1 23 527 550 527 550 0.88 6 13 2.2 1.3e+02 3.2 0.1 2 14 569 581 568 593 0.85 7 13 0.00077 0.044 14.1 3.3 2 23 601 623 601 623 0.96 8 13 0.0033 0.19 12.1 0.1 1 23 720 743 720 743 0.95 9 13 0.00012 0.0069 16.6 0.2 1 23 810 833 810 833 0.92 10 13 0.0013 0.074 13.4 2.2 2 23 883 905 882 905 0.97 11 13 0.0021 0.12 12.7 2.0 1 23 996 1019 996 1019 0.92 12 13 0.058 3.4 8.2 1.5 1 21 1071 1091 1071 1092 0.95 13 13 2.4 1.4e+02 3.1 0.5 1 10 1179 1188 1179 1203 0.64
Sequence Information
- Coding Sequence
- ATGGAAGGTATGGACTTGTGGACGTCAATGTTTTCTACTGATTTCGAGGAGGGCGACGGCGACGGTGATGGTGAAGTGGATAATTATAATCATGGCAGCAATGCGCATGCAGACGAGTTTATGGGCGACGAGGAGGAGGAGGACGACGACCATGAAGGCGATATTGATGAGATTGAAGAGGGTGATGCCAGAAGACGCAAAAGAAAGTCAAAGGAACATGAACCTGATGACGATGCCATATTTGATTTCGAACTGGAGCCTGTAGTTAGTATCGCTGAACCAGAAACAGAATCTGTTCGCAGAGGAACTGTTGCATTGATGCCTCCCATACCATCTGGACCGCCCGTAAGGGGAATGCACCGTCAGTCACTACCAGCATCGTTTGGATCATCACTAACACCGCGAGGATCTGGAGCTGGAGCAACTTCAACGCGGCCAACGACTTCCCAAATCAATGCCACCGATGAAAACGGGGTGCCAATTAATTATGAACTAGGTGTTATTTACATATGTCCTGCCTGTGGCGCTGAGTACCGACAGCAGGACATGTGGAAACGTCATATGAACCAAATGCATCAGTACAATACGCGCAAAGGTCTCAATTTTGTAGCCATCGATAAGCTTTATCATCGGTGCCTGGAGTGCAATAAGCGTATTGCCATGCACAGTCGGGAGAATCTGCTTAAACATAAGTTTACCCATTTGCCATATCGATGCACCAAGTGTTATATATGTAAGCGAGAGTACAAATACAGGCAGGACCTGATGGTGCATCTTCGTATGGTGCACTGTGATGAAGTGGTGGCCATGATGCGCGAAGGCGATAGCACTGCTGGCCGAAAGACACGTGTGCGTGAGCCACGCACGGAAAGTCATTTATCTCTGCAAGCTCATGGCTCAATAACTGATGACGACAACAATGGCCCCGACGATGGGTTAGAGCTGGCACATGCACATGGAGAAACAGAAGCCATAATTGAGGATGATGATCCGGTGCGGAACTCATTGGCCAAACGGAAGCGAAATGATCCAAGTACAGGCAATGGTAATAGTAGCAGCGCTGCAGACATATGTGAGGATTATATACACTACATGTGCCCGGATTGTGGCACCGATTGCGACACCCATGCCCAGTGGAGTCAGCACATTGAGTTTGTGCATGATTATGTGAGCAGAAGAGGACTCAACTTTCGTTGTGTGGACATGCAGATGCAGTGCCTGGAATGCAAAAAGTTTGTGATCCCGAACACGATCAAGACACTGCGAGCTCATAAGTTTAGCCATTTGTCGCAGCCTGATTGGATGCGCTGCAAGCTCTGCTACAAGGGCTATAGGGAGCACAAAGAACTCGTTAAACATTTACTTAAACAGCATCATCTCGAGACTTTAATGCCTGAGGGTGAGATGGAGATGGAGCGAGATGAGCCGAATCAGAGCACCAGTATCGTTGATGATGACGGGGACAATGCTGGCAATGGCAATGAAAATGGCTGCGATGATGAAATGCTGCATTGGGACGATGCACCACGTCGTGGCGGTCGCATTAGTAGTGATGATATGTACGAGCCACACATTGACTATTTATGTCCACAATGCGGCAGGGAATTCATCGAAAAGAAGCATTGGCGCACTCATGTCGTGCAAGCGCACGGTATGAACGATTTGTCCAAATTGAACTTCGAGGTGATTAACGATAGACAACTGAAGTGCACCGAATGCGACAAGATCATAACGAATGCCTATGGTATTCAGAACGCGCAACAGCATCGGATAACGCATCTGCCGTTCAAAGCATATGCCCGTTGCCGCAAGTGCCACAAGTCCTATACGGATCGCAAGGGCTTAGTCAAACACTTGGCCACATATCATCGAGTTGGCTACGAGCCGCGTAAAGTTGCTGGACCAACTGGACCAAATGTGGCTACACCTAAAACGCCTTCACAAACGCCGCGTAAACAAATTGTCACTGTAGCCAATGAAACTTTTGAGATTATTTATTTGGATGAGGAGCAATCACCGCCAAGCAATAATAACATTAATGAGGAGAATGATTTCGGTGAGCAAATGCAAGCGGATGACGATGATTGTATCATTAGCGCCACCAGCAGCAGTAGTAATCGCCCCGTGCCCCCACTTCTGGTGCCCAATCCCAATCGCTACAAGTGTGTCGATTGTGGTTCCTTGTTTCCCACACAAGTGGCGCTTAAGTTGCACATCAGTGAGGAGCATGATTTCATGGATTCACAATATAGTGCCAAAAAGTTTGATAACGCCGAACCGTCAAAGGAGGATGCAGCTTCATCATCCACATCTGCTCAAGAGCCCGTGGCGAAGAAAACACCGTCAGCAGCCACAAGTGGCACGAAAACAAAAAGGACAGTGAGAATCAATAGCTCTGGTGTATCAACCATTGAGCAAAATTATATATTCCTGTGTCCGTCCTGCGGCAAGGCGTACAAGACCCAGTTTGAGTGGCGTCGTCACATCAACGATGCCCACAATTTTGACAAGCGGCAATACTTGAACATGCGTCAGTTAGACAAGTATCGATATCAGTGTACACAATGTAAGGATATTGTGAGCAGTTCCAAACTGAAGGGTCTGCAAGATCATCATTTCCGCCATCTGCCCTATCGCCTCTATCTTAAGTGTCTTGTGTGCGGCACTTGCTACAATCATAAGCCCAACATTGCGGCACATTTGCGTACGCGGCACAACATCTTTGAACGCGACACTCCATGGCGGGAGCAGCAACCTAAGCCACAGTACAATTACGTGAATATGAAAGACAAGGAAAGCAAAGAAATGGAACCACGTGGCATATCCTCGACATCTTCATCCCCCACACCTGGCAGCAGCAGTGCCATTAACCTTGGACGCTCATTAAAACCTCAGCCTGGCATCTTACCCACACGACCGGCTGGATTAAATACGCTGGAGGATAGCATTTCTTATCACAATGCTGTGGATCTGGACTTTATCACGTACTATTGTCCCAAGTGCAATAAGAACTTTGATTCTCATGCGTTCTGGCGCAAACACATTGTGGAACAGCACAATTTCAATAGTCGACAAGGTCTGAACTTTCGTCAAATCGATATGCATCACTACTTGTGCCTCGAGTGCTATAAGCGTGTGACTGTTACCCACACCAAGGGCGCCATTGGTCAGCTGCAGTCCCATAAGTTCCGACACTTGCCCTATCGCTCGTTCAAGTGTTTGACTTGTAATGGTGAATTTGTGCGGAAACAAATGTTCTTTAAGCACTTGAATCGCGACACAAATCGTTGTGACAATAAACCACATAGTGCCCAGGATATTCAGGATGATGACGTTGTGGAGCAACTGGAGAGCGTTGCTACAGTTCTAGCAGTGCCAGAAGAGGCAGATCCCGCTACTTATCGCCTTTGGTGTCCACAGTGTGGTGATAAATTCATTACCGGCAGCAAAGCGCTTTGGCGTGAACACATTAATATGTATCATGGCCTGGGCAAGCGAGATCATCTCCATATGCGAAAGTTGGACGATGAACTGTATCGCTGCACCGACTGTGACGAGCAGTTGCAAACGAAGCAGCTGCGTGTGCTGCAAGAACATCGCTTCCGACATCTGCCCTATGCCGCCTATATACGCTGTCAGCTCTGCGAGCAGCAAGAGGATGAACTCGGTCATGGAGCTGTGGCAGCTGGTCTGCACAGTATGCAAGAGTTCAAACAACATATACGCGACAAGCATCCTGATGTACCTGCTGATGAAGAGCCAACACAATCACTAGACGATGAGGGCAGCCAAAAGACAAGCATTGAAACGTCCGGGAACGGACGATATATGCCACTGCCTCCTCATTTACTGGACGATGATATCGACGATGTGGAATTTGAGAAACAGTATCTGCTGAGTTAG
- Protein Sequence
- MEGMDLWTSMFSTDFEEGDGDGDGEVDNYNHGSNAHADEFMGDEEEEDDDHEGDIDEIEEGDARRRKRKSKEHEPDDDAIFDFELEPVVSIAEPETESVRRGTVALMPPIPSGPPVRGMHRQSLPASFGSSLTPRGSGAGATSTRPTTSQINATDENGVPINYELGVIYICPACGAEYRQQDMWKRHMNQMHQYNTRKGLNFVAIDKLYHRCLECNKRIAMHSRENLLKHKFTHLPYRCTKCYICKREYKYRQDLMVHLRMVHCDEVVAMMREGDSTAGRKTRVREPRTESHLSLQAHGSITDDDNNGPDDGLELAHAHGETEAIIEDDDPVRNSLAKRKRNDPSTGNGNSSSAADICEDYIHYMCPDCGTDCDTHAQWSQHIEFVHDYVSRRGLNFRCVDMQMQCLECKKFVIPNTIKTLRAHKFSHLSQPDWMRCKLCYKGYREHKELVKHLLKQHHLETLMPEGEMEMERDEPNQSTSIVDDDGDNAGNGNENGCDDEMLHWDDAPRRGGRISSDDMYEPHIDYLCPQCGREFIEKKHWRTHVVQAHGMNDLSKLNFEVINDRQLKCTECDKIITNAYGIQNAQQHRITHLPFKAYARCRKCHKSYTDRKGLVKHLATYHRVGYEPRKVAGPTGPNVATPKTPSQTPRKQIVTVANETFEIIYLDEEQSPPSNNNINEENDFGEQMQADDDDCIISATSSSSNRPVPPLLVPNPNRYKCVDCGSLFPTQVALKLHISEEHDFMDSQYSAKKFDNAEPSKEDAASSSTSAQEPVAKKTPSAATSGTKTKRTVRINSSGVSTIEQNYIFLCPSCGKAYKTQFEWRRHINDAHNFDKRQYLNMRQLDKYRYQCTQCKDIVSSSKLKGLQDHHFRHLPYRLYLKCLVCGTCYNHKPNIAAHLRTRHNIFERDTPWREQQPKPQYNYVNMKDKESKEMEPRGISSTSSSPTPGSSSAINLGRSLKPQPGILPTRPAGLNTLEDSISYHNAVDLDFITYYCPKCNKNFDSHAFWRKHIVEQHNFNSRQGLNFRQIDMHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPYRSFKCLTCNGEFVRKQMFFKHLNRDTNRCDNKPHSAQDIQDDDVVEQLESVATVLAVPEEADPATYRLWCPQCGDKFITGSKALWREHINMYHGLGKRDHLHMRKLDDELYRCTDCDEQLQTKQLRVLQEHRFRHLPYAAYIRCQLCEQQEDELGHGAVAAGLHSMQEFKQHIRDKHPDVPADEEPTQSLDDEGSQKTSIETSGNGRYMPLPPHLLDDDIDDVEFEKQYLLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00569250; iTF_00471147;
- 90% Identity
- iTF_00471147;
- 80% Identity
- -