Dpar012531.1
Basic Information
- Insect
- Drosophila parthenogenetica
- Gene Symbol
- -
- Assembly
- GCA_035047505.1
- Location
- JAWNPM010000183.1:1535796-1539756[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00044 0.033 14.8 0.1 1 23 169 192 169 192 0.96 2 13 0.0015 0.12 13.1 2.9 2 23 241 263 237 263 0.89 3 13 0.013 0.99 10.1 0.9 1 23 366 389 366 389 0.93 4 13 0.12 9.1 7.1 4.5 2 23 438 460 437 461 0.95 5 13 0.0035 0.26 12.0 0.5 1 23 526 549 526 549 0.88 6 13 2.1 1.6e+02 3.2 0.1 2 14 568 580 567 592 0.85 7 13 0.00074 0.055 14.1 3.3 2 23 600 622 600 622 0.96 8 13 0.0012 0.093 13.4 0.0 1 23 719 742 719 742 0.95 9 13 0.00012 0.0089 16.6 0.2 1 23 807 830 807 830 0.92 10 13 0.0012 0.093 13.4 2.2 2 23 880 902 879 902 0.97 11 13 0.002 0.15 12.7 2.0 1 23 993 1016 993 1016 0.92 12 13 0.056 4.2 8.2 1.5 1 21 1068 1088 1068 1089 0.95 13 13 8.1 6e+02 1.4 0.3 1 9 1176 1184 1176 1200 0.74
Sequence Information
- Coding Sequence
- ATGGAAGGTATGGACTTGTGGACGTCAATGTTTTCGACTGATTTTGAGGAGGGCGACGGCGACGGTGATGGTGAAGCGGATAATTATAACCATGACAGCAATGCGCATGCAGACGAGTTTATTGGCGACGAGGAGGTGGAGGACGACGACCAGGAAGCCGATATTGATGAGATTGAAGAGGGTGATGCCAGTAGACgtaaaagaaagcaaaagggGCATGAGCCTGATGACGATGCCATATTTGATTTCGAATTGGAGCCTGTAGTTAGCATTGCTGAACCAGAATCGGAATCTGTCCGCAGAGGAACTGTTGCCCTGAAGCCTCCCATACCATCTGGACCTCCCGTAAGGGGAATGCACCGTCAGTCGCTACCAGCATCGTTTGGATCATCACTAATGCCTCGAGGATCTGGAGCAGGAGCACATTCAACCCGGCCAACGACTTCCCAAATCAATGCCACCGATGAGAACGGAGTGCCAATTAATTATGAACTAGGTGTTATTTACATATGTCCCGCATGTGGAGCCGAGTACCGACAGCAGGACATGTGGAAACGTCATATGAACCAAATGCATCAGTACAATACGCGCAAAGGTCTTAATTTTGTGGCAATCGATAAGCTGTATCATCGATGCCTGGAGTGCAATAAGCGTATTGCTATGCACAGTCGAGAGAATCTGCTTAAACATAAGTTTACCCATTTGCCATATCGATGCACCAAGTGTTATATATGTAAGCGAGAGTACAAATACAGGCAGGACCTGATGGTGCATCTTCGTATGGTGCATTGTGATGAAGTGGTGACCATGATGCGCGATGGCGATAGCACCGCTGGCCGAAAGACACGTGTGCGTGAACCGCGCACCGAAAACCATTTATCTCTGCAAGCTCATGCCTCAATATctgacgacgacaacaacgaccaTGACGATGGCTTCGAGTTGCCGCATACCCATGGAGAAACAGAAGATATTTCTATCGTtgaggatgatgatgaggtGCGAAACTCATTAGCTAAACGGAAGCGAAATCTTCCCAGCACAGGTAATGGAATTGGTGGCAGAGCTGCAGACATATGTGAGGATTATATACACTACATGTGCCCGGATTGTGGCACCGATTGCGATACACACGCCCAGTGGAGTCAGCACATTGAGTTCGTACATGATTATGTGAGTAGAAGAGGTCTCAACTTTCGGTGCGTAGACATGCAGATGCAGTGCCTAGAATGCAAACAGTTTGTCATTCCGAATACGATCAAGACACTGCGAGCTCATAAGTTTAGCCATTTGTCACAGCCTGATTGGATGCGCTGCAAGCTTTGCTACAAGGGTTATAGAGAGCACAAGGAGCTCGTCAAGCATTTGCTCAAACAACATCATCTGGAGACTTTAATGCCTGACGGTGAGATGGACAAGGAGCGTGATGAGCCAAATCAAACCTTTGATGATGACGGGGACAATGCTGACAATGGCAATGACAATGGCTGCGATGATGAAATGCTGCACTGGGACGATGCTCCACGTCGTGGCGGTCGCATTAGTAGCGATGATATGTACGAGCCACACATTGACTATCTCTGTCCTCAATGCGGCAGGGAGTTCATCGAAAAAAAACACTGGCGCACTCATGTCGTCCAAGTGCACGGCATGAACGATTTGTCCAAGCTGAACTTTGAGATAATCAACGATAGACAGCTCAAATGCACCGAATGCGACAAGATCATAACGAATGCCTATGGTATACAGAATGCACAACAACATCGAATAACGCATCTGCCGTTCAAGGCATATGCCCGGTGCCGAAAGTGCCACAAATCGTATACGGATCGCAAGGGTTTAGTCAAACACTTGGCCACATATCATCGAGTTGGCTACGAACCGCGTAAAGCAGTTGGACCAACTGGAGCAAATGTGGCCACATCCAAGCCGCCTTTACAAACGCCGCGTAAACAAATTGTCACCATAGCCAATGAAACATATGAGATTATTTATTTGGATGAGGAGAAATCACCGCCAAGCAATAATAACATTAACGAGGAGAACGATTTTGGTGAGCAAATGCAAGCAGATGAGGATGATTGTATCATCAgctccaacagcagcaacagtaatcGCCCGGTGCCTCCACTTCTAGTGCCCAATCTCAATCGCTACAAATGCGTTGATTGTGGTTCCTTGTTTCCCACACAAGTGGCTCTTAAGGCGCACATTAGTGAGGAGCATGATTTCATGGATACACAATATAGTGCAAAAAAGTTTGATAACTCTGAACCGAAGGAGGAGGCAGCTTCATCCTCAACATCCGCTCAAGACCCGGTGGTTAAGAAAACACCGTCAGAAGCGATAAGCGGCATGAAGAAAAAGGCAGTATTAATCAATAGCGCTGGTGTATCGACTATTGAGCAGAATTACATATTCCTGTGCCCGTCCTGCGGTAAGGCGTACAGGACCCAGTTCGAGTGGCGTCGTCACATCAACGATGCCCACAATTTTGATAAGCGGCAATATTTGAATATGCGACAGTTGGACAAGTATCGATATCAGTGTACGCAATGCAAGGATATTGTGAGCAGTTCCAAGCTGAAGGGTCTGCAGGATCATCATTTCCGCCATCTGCCCTATCGCCTCTATCTCAAGTGTCTCGTTTGCGGCACTTGCTACAATCATAAGCCCAACATTGCGGCACATTTGCGTACGCGGCACAACATCTTTGAACGTGATACTCCATGGCGGGAGCAGCAACCGAAGCCACAGTACAACTATGTGACTATGAAAGACAAGGAGAGCAAGGAAATAGAACCTCGGGCTATATCCTCGACATCTTCATCGCCCACACCTGGAAGCAGCAGTGCTATTAATCTGGGACGCACATTAAAACCGCAGCCTGGTATCTTGCCCACACGACCGGCTGGATTGAATACGCTGGAGGACAGCATTTCTTATCACAATGCTGTGGATCTGGACTTTATCACGTACTATTGCCCCAAGTGCAACAAGAACTTTGATTCTCATGCCTTCTGGCGCAAACACATTGTGGAACAGCATAATTTCAATAGTCGTCAAGGTCTGAACTTTCGTCAAATCGATATGCATCACTACTTGTGCCTCGAGTGCTATAAGCGTGTGACTGTCACCCACACCAAGGGCGCCATTGGTCAGCTGCAGTCTCATAAGTTCCGACATTTGCCCTATCGCTCGTTTAAGTGCTTGACCTGTAATGGTGAATTTGTGCggaaacaaatgttttttaagcaCTTGAACCGGGACACAAATCGTTGTGACAACAAACCACATAGTGTCCAGGACAACCAGGATGATGATGTTGTGGAGCATCTGGAGagcgttgctgctgttccacTTGCGCAAGGAGAGGCAGATCCTGCCACTTATCGCCTGTGGTGTCCACAGTGTGGTGATAAATTCATTACCGGCAGCAAAGCGCTGTGGCGTGAACACATCAACATGCATCATGGCCTGGGCAAGCGAGATCATCTCCATATGCGAAAGTTGGGCGATGAACTGTATCGATGCACCGACTGTGAAGAGCAGCTGCAAACGAAACAGCTGCGTGTGCTGCAGGAACACCGCTTCCAACATCTGCCCTATGCAGCCTATATACGCTGTCAGCTTTGCGAGCAGCAAGAGGATGAACTCGGTCATGGAGCTGTGGCAGCTGGTCTGCACAGTATGCAAGAGTTCAAGCAACATATACGCGACAAGCATCCTGATGTACCTGCGGATGAAGAGCAAATCCAATTACTGCCAGACGATGAGGGCAGCCAAAAGACAAGTATCGAAGCGTCCGAAAATGGACGATACATGCCACTGCCCCCGCACTTGCTGGATGATGATGTCGACGATGTGGAATTTGAAGAACAGTATCTGCTGAGTtag
- Protein Sequence
- MEGMDLWTSMFSTDFEEGDGDGDGEADNYNHDSNAHADEFIGDEEVEDDDQEADIDEIEEGDASRRKRKQKGHEPDDDAIFDFELEPVVSIAEPESESVRRGTVALKPPIPSGPPVRGMHRQSLPASFGSSLMPRGSGAGAHSTRPTTSQINATDENGVPINYELGVIYICPACGAEYRQQDMWKRHMNQMHQYNTRKGLNFVAIDKLYHRCLECNKRIAMHSRENLLKHKFTHLPYRCTKCYICKREYKYRQDLMVHLRMVHCDEVVTMMRDGDSTAGRKTRVREPRTENHLSLQAHASISDDDNNDHDDGFELPHTHGETEDISIVEDDDEVRNSLAKRKRNLPSTGNGIGGRAADICEDYIHYMCPDCGTDCDTHAQWSQHIEFVHDYVSRRGLNFRCVDMQMQCLECKQFVIPNTIKTLRAHKFSHLSQPDWMRCKLCYKGYREHKELVKHLLKQHHLETLMPDGEMDKERDEPNQTFDDDGDNADNGNDNGCDDEMLHWDDAPRRGGRISSDDMYEPHIDYLCPQCGREFIEKKHWRTHVVQVHGMNDLSKLNFEIINDRQLKCTECDKIITNAYGIQNAQQHRITHLPFKAYARCRKCHKSYTDRKGLVKHLATYHRVGYEPRKAVGPTGANVATSKPPLQTPRKQIVTIANETYEIIYLDEEKSPPSNNNINEENDFGEQMQADEDDCIISSNSSNSNRPVPPLLVPNLNRYKCVDCGSLFPTQVALKAHISEEHDFMDTQYSAKKFDNSEPKEEAASSSTSAQDPVVKKTPSEAISGMKKKAVLINSAGVSTIEQNYIFLCPSCGKAYRTQFEWRRHINDAHNFDKRQYLNMRQLDKYRYQCTQCKDIVSSSKLKGLQDHHFRHLPYRLYLKCLVCGTCYNHKPNIAAHLRTRHNIFERDTPWREQQPKPQYNYVTMKDKESKEIEPRAISSTSSSPTPGSSSAINLGRTLKPQPGILPTRPAGLNTLEDSISYHNAVDLDFITYYCPKCNKNFDSHAFWRKHIVEQHNFNSRQGLNFRQIDMHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPYRSFKCLTCNGEFVRKQMFFKHLNRDTNRCDNKPHSVQDNQDDDVVEHLESVAAVPLAQGEADPATYRLWCPQCGDKFITGSKALWREHINMHHGLGKRDHLHMRKLGDELYRCTDCEEQLQTKQLRVLQEHRFQHLPYAAYIRCQLCEQQEDELGHGAVAAGLHSMQEFKQHIRDKHPDVPADEEQIQLLPDDEGSQKTSIEASENGRYMPLPPHLLDDDVDDVEFEEQYLLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00479030;
- 90% Identity
- -
- 80% Identity
- -