Dara002229.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila arawakana
Gene Symbol
sip1
Assembly
GCA_018151165.1
Location
JAECWX010000440.1:74784-78133[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 7e-95 5.6e-91 304.8 14.5 2 275 407 677 406 677 0.97
2 2 0.4 3.2e+03 -2.7 0.0 245 269 692 716 683 729 0.54

Sequence Information

Coding Sequence
ATGTCGGACAATGAATACGAGCGATTCGAAATCACAGACTATGATCTGGACAATGAGTTCAACATAAACAGACCACGCAGACGCCAAACGAAGCATCAGCAAATTTATGGCATTTGGGCGGACGACAGCGACAATGAGAGCGAAGGCGAGAGTGGAGGACGACGCGGACGTCGTGGTTTGGGCGGTGGCACAGGTAGCAAATCCAAGGACTACACGGCACCCGAGGAAAAGACCGGCGAAAGCGACGGGGAGAAGGAGATCAATGAGGAGGACAGCGACGACGGGCGTCCCTCGTTTGGACGCAAGCAGCCACAGCTAATGAACAACAGCGACGGCAACAGCTCCGACAGCTCAACGGCAGCGGGAGAGGAGCACTCACGGAAGGCATCGATGTCGGCACGCAATACGGCCGGCCTCAGGCACAAGTCGCACATAGCGAGCAACCGGAATGTGGGCGCCTGGGAGCAGCATACACGCGGCATTGGAGCCAAGCTGCTGCTCCAGATGGGCTACGAGCCTGGCAAGGGATTGGGTAAGGATTTGCAGGGTATATCGCAGCCGGTGCAGGCACATGTGCGCAAGGGACGAGGCGCCATCGGTGCCTATGGTCCAGAGGTGGCAGCTAGCGTGGGTGGGCAAGGAAAACAATTGAAACTTGAAGAGGAAGCGAAAGACACCAAAGAAAACAAGGAGCAGCAGAACAAGTGGAAGAAAGGAAGCAACGAAACACGGGAGAAGTCCAACAAGCGTTACTACTACAAGACCGTGGAGGAAGTCATAGCCAAGGGCAAGAAATCGGATCACTTGCTGTCGGAGAAGCTCAGTCAAAGACTGGGCAACGTGCCCGTCATAGACATGACCGGACCCGAGCGCCGTGTACTCAGTGGTTACCACGCTCTGGCCCAGAACAAGGTAGTGCCCGAGGAGACGCTCTACGAGGCGCAAGCTGGCGAGGAGCGTGCCGAGAAGAGCACACCCATCTCCGTGTTCAGCATGCCCGAATTGACCCACAATCTCCAACTGCTGGTGAGCCAGTGCGAGCAGGAAATAATTGCCATTGACAAGACGGAGCGGGAGTGTGAGGATCGCCAGGCGGCCTTGGAGCACGAGCAGCGCCAGCTGCTAGAACTGGTGCAGCTGGAACGGAATCACATGAGCACTCTTCAAGCGGCACTCGCCCGTCTCGACGAGCTCAGCGAGAACCCGGAGCTGAGTCTGGCCCAGGCGGAACACTTGTTCCTGGAGCTGCAGCTGGACTATGCCGCGGAATACAAGGAGTTCGGATTGGCCGATCTGGCGGCAGGAGTTATAGCGCCGCTGCTGAAGCGTGATCTGACCGACTGGCATCCACTGCAGCAGCCGACGCAGCCCTTGGCGCTAGTAAAGCGCTGGCGGGGCATACTACAGCGTGAGGGATCGGAAGAAGCGGATCAGCAGACGCGCAATGTCTTTGATCCTTACTCCTCGCTCATCTGGGCCGGTGTGATGCCCTCGTTTAGAGCTTGTGCTTCCAGCTGGCAACCAAAGGAGCATGCACCTATGGCAGCTCTACTGGATGCTTGGGCTCCACTGCTGCCCACCTGGGTGCTGGACTCGGTGCTAGAGCAGTTAGTGCTGCCGCAGTTGACGCTCGGCGTCAGCGAATGGGATCCAATGACCGACACTGTGCCCATACACAGCTGGATTCTGCCTTGGCACGGCATACTGGGAAGCAAATTGGAGGAATCCATCTACCCGCAGATCCGTAGCAAGCTGGGCGTGGCTCTGCAGTCCTGGTCACCACAAGATCGATCGGCAAGGGCCATGCTCACGCCCTGGCAATCGGCATTCCCGGAGGAGCAACTGGTCCAGTTCCTGCTGCGTCACATCATACCCAAGCTGCAGTTGGTCCTCGCCGAGTTCGTGATTAGTCCGCTGCAACAGAATCTGGAGTTGTGGCATCAGGTGTGGGAGTGGCACGAGCTCATACCCGTCCATCACATGGCTCAGCTGTTGGACAAGCACTTCTTCCCACGCTGGATGCAGGTGCTGGTCATGTGGTTGAACCAGTCACCGGATTATGCGGAGATCTCCCGTTGGTACGCCGGCTGGAAGAACATGCTCAGCGAACCGATACTCCGGGAGCCCTGCATCAAAGAACACTTGCGTCGTGCCCTCGACATGCTTCACCGCGCCACCGATGTGGTCCTACAAACCAGCTCTGTTCCCCCGCCGCCCATGCCGCCAGTGCCACCTGCTCCAGTGCTTCTTCCCAACGTAATGCTGGTCGATGTGGCGCCCCCTGCTCAACTGGAGTTCAAGGAGCTCGTCTCACAGAAATGCGCCGAATTGGGCATCATATTTGCTCCACTCCCGGGACGGCGGGAACTGGGCAAACAGATCTATCGCGTGGGCAAACTCTTCGCCTACATCGATCGGAATGTGTGTATGTTGAGTGACAGCAGCTTCATGAACTGGCAACCCGTGGGACTCAATCAGTTACTGGAACGAGCGCAGACGGGAATGCTCTAA
Protein Sequence
MSDNEYERFEITDYDLDNEFNINRPRRRQTKHQQIYGIWADDSDNESEGESGGRRGRRGLGGGTGSKSKDYTAPEEKTGESDGEKEINEEDSDDGRPSFGRKQPQLMNNSDGNSSDSSTAAGEEHSRKASMSARNTAGLRHKSHIASNRNVGAWEQHTRGIGAKLLLQMGYEPGKGLGKDLQGISQPVQAHVRKGRGAIGAYGPEVAASVGGQGKQLKLEEEAKDTKENKEQQNKWKKGSNETREKSNKRYYYKTVEEVIAKGKKSDHLLSEKLSQRLGNVPVIDMTGPERRVLSGYHALAQNKVVPEETLYEAQAGEERAEKSTPISVFSMPELTHNLQLLVSQCEQEIIAIDKTERECEDRQAALEHEQRQLLELVQLERNHMSTLQAALARLDELSENPELSLAQAEHLFLELQLDYAAEYKEFGLADLAAGVIAPLLKRDLTDWHPLQQPTQPLALVKRWRGILQREGSEEADQQTRNVFDPYSSLIWAGVMPSFRACASSWQPKEHAPMAALLDAWAPLLPTWVLDSVLEQLVLPQLTLGVSEWDPMTDTVPIHSWILPWHGILGSKLEESIYPQIRSKLGVALQSWSPQDRSARAMLTPWQSAFPEEQLVQFLLRHIIPKLQLVLAEFVISPLQQNLELWHQVWEWHELIPVHHMAQLLDKHFFPRWMQVLVMWLNQSPDYAEISRWYAGWKNMLSEPILREPCIKEHLRRALDMLHRATDVVLQTSSVPPPPMPPVPPAPVLLPNVMLVDVAPPAQLEFKELVSQKCAELGIIFAPLPGRRELGKQIYRVGKLFAYIDRNVCMLSDSSFMNWQPVGLNQLLERAQTGML

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00476613;
90% Identity
iTF_00568968; iTF_00470861;
80% Identity
-