Daff015844.1
Basic Information
- Insect
- Drosophila affinis
- Gene Symbol
- rfx7.L
- Assembly
- GCA_037356375.1
- Location
- JAZHFB010000003.1:5240306-5244656[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-32 1.1e-28 100.0 0.1 3 78 307 382 305 383 0.97
Sequence Information
- Coding Sequence
- ATGTCCGAAAAGCATGGCCAGCTGGGTGCGCAGTGGACGAAATCAGCGGCGGCGCcaacagcatcaacagcagcagctctagCCTCGACTCCGGCTGCCATCCCGCTCCAGAAGCTCCAGAACCCAAATCCGAGTCCAAACTTTCCAGCCACCAGCCTGCCGTATGGCAATTGTGGGATACCTGGACTCCCAGGCATTCAGCCAGCGGACATACCGTATACCTCGGGACGGTTTCAGGCCCCGTCCATCATCCATGCCAAGGCCTCGCCCCTGACCATCGTGCCAGTGGGCACTGTCACCGGGCCCCACTGTCCCCCCCAGGTCTCGCCCACGAGCCACCACACAAATGTACCTGTATCCGTGACCGTATCCGCTCCCAGTGGTTTTGTGCCGCCGCCGTTTGCAAATGCTGCCAGTGGCGCGACGTCCGTTCTGCAACCGAATCCGTTTGCAACGGCCGCAGGGAATGCCTTTGCCAATGCCTTCAACTTCAATACGGCGCAACAGCTAATGCATGCCATGAGTACAggcgcggcagcagcaaccaccACACCGATCacagccacacccacagcGACTCCTGTCGTAGCGGGCGGGGGTCCTGCCGCACAGAGACATCCTGTCGATGTGGTTCCCACGACAAGTGGCGTCATCAATTCCACCATTGCTGAGAATGTCATGAATGCGTTGTCCAACTCGAACGCTGCCTCCGATGAGAAGATGCGACGCGTGCAGCAGGTGATTGAGGCCAGCATTGATGACAATGCGAAGCTTCAAATCTCGCAGATCCTCGAACGTGTTGCGGTCTTGAAGCCAATTGAGAAACTATTTCTCTATCTGCGTCTGCCTGGAGAGTGCGCGGACTCGGATCCGTTGCGACAGCCACAGAATCCGCTGGGCACACGCTCGGAGATCAATCACACCATCAATTGGGTGCGCTCCCATTTGGAACACGATGCACAGGTCTCCATACCAAAGCAGGATGTATACAATGATTACATCGCCTATTGCGAACGCCTGAGCATCAAGCCCCTGTCCACCGCAGACTTTGGCAAAGTAATGAAGCAAGTCTTTCCGGGCGTACGTCCGCGTCGTTTGGGAACGCGTGGAAACTCTCGCTACTGCTATGCGGCCATGCGGAAGACCACAAAGCTAACGCCCCCCCAGTTGCCGGCGCTGTGCAAAACGGAACAAATGACAGGAGACGAAGGCGCGACTGTGGTTGCCCCAGCCACTGCCATGCCTCTGCAGAATCACTCTCCAGGTGCGTTGCCTCCGGTGGCGACAGCCGACAGCGAGAACTGGGATGTGGTGCGCAGCTGGGCGGAGAAGCTGTTGAACACAAAACTGGACAGCATTTCAGATCTAAGCACGCGGATCAAGAGCAACAACGCCACGGTTATGGGCGCACACTTGGGCGCCAAAAAGTACACACCCCGAGAGCCCAAGGAGAAACGTGTTTTGGCCGATATGGGACCACTGAAGAAGCGACGCAAAAAGAAACGCAAAGGCTCGACCTCCTCAGAGTCGAGCTGCAATCAACTGGTGGCTGGGATGCAGGATGCTGGCAGCAGTCAGGACGCCATCGATGAACCGAAAACGGAGCAGCTAGTGAAGATCAAGCAGGAGATTATAGACTCACCCGTACaccagtcccaatcccagtgccagcagtcccagcagcagcagcccccaaTGAATTATCTGCATCAAATGATGCCCATGAACCTCGCCACAGAGCAGCGAAGCAACAGTGCTGTGCGCAATCTGACGCCCAAGATCATGGAGATGAGTGTGGCAGTGCCCCCAACGGTGGTGCTCACACAGCAGCAGGATGAGCCATCGCCCACAGCTATGGTGATCAAGGACGAGGTGGAGGACTACAATACATCCAATATATTCTGCAAAAAAGTGTTGAAGGCCCAGCAAACGAAAGGATTTTGGGCCAATTCCCCGAGCAGCGGTACAACGGGCGGCGGGGGAACCTTGCTAGTGCCGCCCGTGATCACAACGACAGCGGCGACACCTCCGCCACCGGACATCTCGCAGGGACCAATGTCCATGGGACCTCCAGCGCAAATGATGATTTCCAGTTCGGTGAGCCCCTCCAGCAGCATGGACGGCAACAACACCACACCGAAGGTGGCCTCCAGGAACATGATTCTGCTGCGTGCGAAGCGTATGCTGGCGGCGGAGAGTGCCGCTGCCTTGTCGGCCGCTGCAGAGGATTCGGGACTGCCGGAGAATCTGGGTTTGCCCAGGGAGCGGGTGATTAGCATCTGTAATATGGATAAGCACGAGCTGGACGACTACTTCCTGCCCGTTGAGGATGAGGAGAACTCCGAGGAGCCCGACACCGAGCTGCTTCAATATTTTCAGATGGGAGACGCTGAGGAAAAACAACTGAATTCCTTAGATGCTgtagaacagaacagaaatcCACAAGGAACACCGACAACAAcgtcgacgacgacaacgataCAGGCGGGAATGGCGCCAGCGATGCACCAGCAACAGACCCAAACccagcagccccagccgccGAATCGTGAAGCCGCAGCGACCATGCCCTCGCCACAGGGCGGCCTGGTCGTCTCAACGGCAATGTTGTCCGGTCAAGCGAATGTGGGTTCTGCCTCAGCGTCTCTGGCTTTAATGTCAAAGAAGCATCAACACCAACAAAACcaaccacaacagcagcagccgcagctgcGAACCAAACAGCTGCCAACAAATGGCAATCCTAACCCGAACAACAGACGAAAGATCAGCCTGAGCAATGCCTCCAGCAATGGCAGCAACAAGAATTGCATATTTCTGCCCATTTCCCCCAACATCAACAATGGAGgaggagcaccagcagcagcaacagcaggcacCGCACCAAATCAAATGCCACTAAGTCAGAATCCAACAAATTCCAATCAACAAAATTGCTTTGCCAGTCCCGGCGTCACGAGGATGCGGCAACGTTCTAGTTTGCTGACCAAACAGCAATCCCTCGACACCGATGGTAATCGGGATCCCATGATTGGGGCAACGCGTAGGAAACGCTGCTATGTCTATAGCTATCCCACAAGCACCTCAGCCTCGGCGCCGCCCAGTCcctcgctgctgcagcagtGCATGGTGGGAAACTGGCCATTTGGTGGAGCAAACTCCTTTCCAGACACAAACAGTGCGGATCCCTTGATTAATCAGAACTCTATGGATCTTGAGACGAGCCTGGCCCTGACGGGTGGCGACGATCTGGATCTGACGGAAACGCAACGCTCGCAATCGGTGCCACTGTCCCAGCTACAGAGGAGCTGTCATCAGTCGCCCAGCTTCAATAGGCAGGCCAGCTTTCAGGCTTCGAGCTATGCAAGCGAGACCTTCTACTCggagaacagcaacagccagaaTTCGGTGGCAGTGCCCCCCCTGAAGGACGTGGAGGCGGCCGCCGCGCTGCTCTACGAAGTGGATGTGGGGGCCATGATATCGCCGAGTTTCAACAATAAGTTTGGGAACATTTCCCAGCAAACGGCCACCACATGCAGCTCCTCGGCTGGCTCCTCCTCTGGCTACAGCAGCGGGGGCTCTGCAGGCATTGTCTCACGTTCTGtgccctccactccactgccgcatcagcagcagaacaacaacagtCTATCGGCTCTTAATGGCAATGGAGTTGGAAatggcggaggaggaggaaccaACTTGAATGCCACAAATGGTTTCTTCAACATCTCGCCATCATTCAACTGGGAAACCTCGAGCAATGGCATACAAGGTGGGCCCTACCTCTCGTACAGCGCTCGCAATACGATGGATATATCCAAGTCGATGCCCACGACGCCCATAACCACGCCCTGCTTTCGCTATAGTCCTAATTTGCACGAAGAGAAGGCTCAGGAGGAGACTACCGAACCCAGGGAAGAAAAAGGAGAGGAGCAGGTGGATGAAAAGGCTGTTTCCCAATTGCCAGAAGATGCCACTGTGGTGGCCTATCTGCTGGAGCATGTGGATCAGTTGTAG
- Protein Sequence
- MSEKHGQLGAQWTKSAAAPTASTAAALASTPAAIPLQKLQNPNPSPNFPATSLPYGNCGIPGLPGIQPADIPYTSGRFQAPSIIHAKASPLTIVPVGTVTGPHCPPQVSPTSHHTNVPVSVTVSAPSGFVPPPFANAASGATSVLQPNPFATAAGNAFANAFNFNTAQQLMHAMSTGAAAATTTPITATPTATPVVAGGGPAAQRHPVDVVPTTSGVINSTIAENVMNALSNSNAASDEKMRRVQQVIEASIDDNAKLQISQILERVAVLKPIEKLFLYLRLPGECADSDPLRQPQNPLGTRSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCERLSIKPLSTADFGKVMKQVFPGVRPRRLGTRGNSRYCYAAMRKTTKLTPPQLPALCKTEQMTGDEGATVVAPATAMPLQNHSPGALPPVATADSENWDVVRSWAEKLLNTKLDSISDLSTRIKSNNATVMGAHLGAKKYTPREPKEKRVLADMGPLKKRRKKKRKGSTSSESSCNQLVAGMQDAGSSQDAIDEPKTEQLVKIKQEIIDSPVHQSQSQCQQSQQQQPPMNYLHQMMPMNLATEQRSNSAVRNLTPKIMEMSVAVPPTVVLTQQQDEPSPTAMVIKDEVEDYNTSNIFCKKVLKAQQTKGFWANSPSSGTTGGGGTLLVPPVITTTAATPPPPDISQGPMSMGPPAQMMISSSVSPSSSMDGNNTTPKVASRNMILLRAKRMLAAESAAALSAAAEDSGLPENLGLPRERVISICNMDKHELDDYFLPVEDEENSEEPDTELLQYFQMGDAEEKQLNSLDAVEQNRNPQGTPTTTSTTTTIQAGMAPAMHQQQTQTQQPQPPNREAAATMPSPQGGLVVSTAMLSGQANVGSASASLALMSKKHQHQQNQPQQQQPQLRTKQLPTNGNPNPNNRRKISLSNASSNGSNKNCIFLPISPNINNGGGAPAAATAGTAPNQMPLSQNPTNSNQQNCFASPGVTRMRQRSSLLTKQQSLDTDGNRDPMIGATRRKRCYVYSYPTSTSASAPPSPSLLQQCMVGNWPFGGANSFPDTNSADPLINQNSMDLETSLALTGGDDLDLTETQRSQSVPLSQLQRSCHQSPSFNRQASFQASSYASETFYSENSNSQNSVAVPPLKDVEAAAALLYEVDVGAMISPSFNNKFGNISQQTATTCSSSAGSSSGYSSGGSAGIVSRSVPSTPLPHQQQNNNSLSALNGNGVGNGGGGGTNLNATNGFFNISPSFNWETSSNGIQGGPYLSYSARNTMDISKSMPTTPITTPCFRYSPNLHEEKAQEETTEPREEKGEEQVDEKAVSQLPEDATVVAYLLEHVDQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00611139; iTF_00487050; iTF_00517450; iTF_00474252; iTF_00514634; iTF_00603093; iTF_00600800; iTF_00580428; iTF_00574553; iTF_00473525; iTF_00480623; iTF_00471351; iTF_00563639; iTF_00484188;
- 90% Identity
- iTF_00574553;
- 80% Identity
- -