Dqua010827.1
Basic Information
- Insect
- Dromius quadrimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963989225.1
- Location
- OZ022325.1:65062057-65063466[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.6 1.1e+04 -1.5 0.0 26 46 52 72 38 74 0.77 2 13 1.9 5.8e+03 -0.6 0.1 26 46 104 124 99 131 0.80 3 13 8.6 2.6e+04 -2.7 0.0 22 43 128 149 126 151 0.75 4 13 0.0013 3.9 9.6 0.6 15 43 177 205 164 214 0.78 5 13 1.5 4.5e+03 -0.2 0.1 21 32 211 222 208 239 0.78 6 13 0.0047 14 7.8 0.0 21 44 239 262 228 270 0.88 7 13 0.075 2.3e+02 3.9 0.1 23 52 269 298 264 300 0.88 8 13 0.67 2e+03 0.9 0.0 23 43 297 317 293 322 0.88 9 13 0.0011 3.4 9.8 0.0 21 47 323 349 320 354 0.88 10 13 3.1 9.4e+03 -1.2 0.0 24 43 354 373 346 379 0.72 11 13 0.029 89 5.2 0.2 22 48 380 405 369 410 0.83 12 13 0.13 4e+02 3.2 0.0 21 43 407 429 405 436 0.88 13 13 0.00054 1.6 10.8 0.3 7 43 421 457 417 462 0.79
Sequence Information
- Coding Sequence
- atgagtaaagattttattattgaagaagataataaaaatttgatagtAATTGAAGAATTACAATTACCGCATGACGTCgaagaaaaaaaagtacaaatatcAAGTCCTGTAAAAAACGAAAATATTAGCAAACAGGATAAAAATGAGGAATATGAATGTGATATGTGTAATAAAACATATTACACTCAAATGCTTTTGAAGAGACATTTGCAAATGCATGGAATATTGCTTTGTGATTGCCAGAAAAATAGGATGTACAAATGCAAAAAATGCAACAAATTGTCGATATATCCGCAAAAGTCAAAATACACTTGTAACATTTGTGACAAATCATACCAAAACTTGCAATATTTAAAAGATCACATTCAAGTGCACTTTGGGGAAAAACGATATACTTGTGAACTTTGCAAAAAATCATTTGGATTTTTAGTTAATTTAAAGAAGCATAAATCCACACATACAGGTGGGAAATTATTTCCTTGTAAGCTTTGCAGCAAATCATTCAAACATGCGGAATCTTTGTATACGCATAGACGTCTACACACTGGGGAAAAGCCATACACTTGTGAAGTCTGCAATAAATCATACAGACTTGCGCATAGTTTGAAGCGTCATAAACTTGAACACACTGGAGAAAAACCTTTTAGTTGTGGAATTTGCCAAAaatcatttacaattttacCTTATTTAAAGCAGCATGAACTCACACATAATGTTGAAAAACCATTTTCTTGTGCAGTTTGCGGCAAATCATTTAGATATTCGAAAGATTTGAAGAAGCATAATTGTCAAAAACTTGTTagaaaaccatttacttgtgcgCTTTGTGATAAATCATTCAGGAATTTGTCTCATTTGAAAGAACACCATTACATGCACACTGGTGCTAAACCATATACTTGTAAAGATTGCAACAAGTCGTTTAGATATTCAAGTTCTTTGACGCAGCATAAACtgatacacactggtgaaaaaccattcacatGTGAAACTTGCAATAAAGCATTCCGAAGTTCCTCCAATTTGAAAGTGCATAAATCTAAACGCACTAATGGCAAACGatatacttgtgaaatttgccaAAGATCATTTGGAGCTTTGTTTACTTTGAAGCGGCACAATCTTGTACATTCTGGTGAAAAGACATTTACTTGTAAAGTTTGCCAAAAATCATTTGGCCAAGCGTGTTCTTTACAGCGACATGAGCTTCTACACACAggcgaaaaaccatttacttgcgaaacttgcaacaaatcattcaagcATTTGAGTACTTTGCGGAAACATAAATTAACACACACTGGTGATAGaccatttacttgtgatatTTGCGATTATTCATGCCGACGGTTGGACAATTTGAAGAGGCATAAATTATCGCACTCACCAGATCACGTCAAATCCGATTAG
- Protein Sequence
- MSKDFIIEEDNKNLIVIEELQLPHDVEEKKVQISSPVKNENISKQDKNEEYECDMCNKTYYTQMLLKRHLQMHGILLCDCQKNRMYKCKKCNKLSIYPQKSKYTCNICDKSYQNLQYLKDHIQVHFGEKRYTCELCKKSFGFLVNLKKHKSTHTGGKLFPCKLCSKSFKHAESLYTHRRLHTGEKPYTCEVCNKSYRLAHSLKRHKLEHTGEKPFSCGICQKSFTILPYLKQHELTHNVEKPFSCAVCGKSFRYSKDLKKHNCQKLVRKPFTCALCDKSFRNLSHLKEHHYMHTGAKPYTCKDCNKSFRYSSSLTQHKLIHTGEKPFTCETCNKAFRSSSNLKVHKSKRTNGKRYTCEICQRSFGALFTLKRHNLVHSGEKTFTCKVCQKSFGQACSLQRHELLHTGEKPFTCETCNKSFKHLSTLRKHKLTHTGDRPFTCDICDYSCRRLDNLKRHKLSHSPDHVKSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470154;
- 90% Identity
- iTF_00470154;
- 80% Identity
- iTF_00470154;