Basic Information

Insect: Dromius quadrimaculatus
Gene Symbol: -
Assembly: GCA_963989225.1
Location: OZ022325.1:66516099-66517296[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4 1.2e+04 -1.6 0.1 29 40 7 18 4 19 0.87

2 9 0.0041 13 8.0 0.0 22 45 152 175 147 182 0.86

3 9 0.13 4.1e+02 3.1 0.1 18 43 176 201 175 205 0.74

4 9 0.00069 2.1 10.4 0.0 20 43 206 229 197 234 0.88

5 9 0.011 33 6.6 0.0 21 51 235 265 230 266 0.87

6 9 0.0061 19 7.4 0.1 21 43 263 285 261 291 0.90

7 9 0.043 1.3e+02 4.7 0.0 21 44 291 314 286 318 0.89

8 9 7.4e-05 0.23 13.5 0.1 21 50 319 347 314 349 0.87

9 9 0.29 8.8e+02 2.1 0.3 21 45 347 371 344 374 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4	1.2e+04	-1.6	0.1	29	40	7	18	4	19	0.87
2	9	0.0041	13	8.0	0.0	22	45	152	175	147	182	0.86
3	9	0.13	4.1e+02	3.1	0.1	18	43	176	201	175	205	0.74
4	9	0.00069	2.1	10.4	0.0	20	43	206	229	197	234	0.88
5	9	0.011	33	6.6	0.0	21	51	235	265	230	266	0.87
6	9	0.0061	19	7.4	0.1	21	43	263	285	261	291	0.90
7	9	0.043	1.3e+02	4.7	0.0	21	44	291	314	286	318	0.89
8	9	7.4e-05	0.23	13.5	0.1	21	50	319	347	314	349	0.87
9	9	0.29	8.8e+02	2.1	0.3	21	45	347	371	344	374	0.90

Sequence Information

Coding Sequence: ATGTCtaatttaattgatatttgttttatttgccTCAAACATTCCAACAATCTTGTAATTATCACGTCTCAAACAACAAATGGACCAAGTTTTGAAgataaactaaataattttctgCCTGGACTTgaactTAATTCTGatattgcaaaatatatttgtgccgAATGTGGAAGTGATTTGAATAAAACTTacgaattcaaacaaaaatgcttacaaaatatAGCAACATACGAAAAGTATGCTCAACAGGTAACCACGACAGATTCTTGTAAATCTGATTTTGTGTGTAAACAAGAAGTGATATCAGATGAAGATTATGAAacgaatattttagaatctcaAAGtgaaataactgcagataaagCACAAATAGAAGAAGTTTTTATTAAAGAAGAATTGCATGAAATTAAAGGAGAAATATGTGGACAAAAAGTTTTGGAAAATCCTGCAAAGAaaaaaccatatacttgtgaTTTTTGCAATAAATCGTTCAAGCAATTGAGTAATTTGAAAGATCACCTCCCAAGACACACAggcgaaaaaccatttacttgtgaagtgtGCAGCAAATCATTCGGACGTATTTATACTTTAAAGAAGCATAAATTATTGCACACCAGCGATAAACCacatacttgtgaagtttgcaacaaatcattcaaacagATGGACCATTTAAAACGGCACCAATTAACACACTCCGATGAAAAACCTTTTTCATGTGATGTTTGCAACCAATCATTCCGATATCCTTATAATTTAAAGCTGCATAAACAGCTGCACACTGGCGAAAAACCacatacttgtgaagtttgcaataaatcgttTAGCTTGTTACGTGATTTAAAACGGCATCGTTTGATACACACAGGAGAAAAACCGTTTACCTGTGAAACTTGCAGCAAATCATTCAggcattttattaatttaaagtatCATAAACGTGTACACACTGACGAAAAACcgtttacttgtgaagtttgcaatactTCATTCCGACATTCGAAAACTTTGTGGCGGCATAAATTGCATCACACTGCTGAAACGCCACACAGGTGTCGCACATGCGACACTTTTTACACTTCCAAACAAAATTTGCAGACACATTTGAGAATTTATCCCAGCCATGaagaatataaatga
Protein Sequence: MSNLIDICFICLKHSNNLVIITSQTTNGPSFEDKLNNFLPGLELNSDIAKYICAECGSDLNKTYEFKQKCLQNIATYEKYAQQVTTTDSCKSDFVCKQEVISDEDYETNILESQSEITADKAQIEEVFIKEELHEIKGEICGQKVLENPAKKKPYTCDFCNKSFKQLSNLKDHLPRHTGEKPFTCEVCSKSFGRIYTLKKHKLLHTSDKPHTCEVCNKSFKQMDHLKRHQLTHSDEKPFSCDVCNQSFRYPYNLKLHKQLHTGEKPHTCEVCNKSFSLLRDLKRHRLIHTGEKPFTCETCSKSFRHFINLKYHKRVHTDEKPFTCEVCNTSFRHSKTLWRHKLHHTAETPHRCRTCDTFYTSKQNLQTHLRIYPSHEEYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00470281; iTF_00470518; iTF_00470290;
90% Identity: iTF_00470281;
80% Identity: iTF_00470281;