Dqua010899.1
Basic Information
- Insect
- Dromius quadrimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963989225.1
- Location
- OZ022325.1:66528365-66529580[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0025 7.7 8.6 0.0 20 52 156 188 147 190 0.82 2 8 1.3 3.9e+03 -0.0 0.0 23 43 187 207 181 213 0.75 3 8 0.00014 0.44 12.6 0.2 22 43 214 235 203 240 0.89 4 8 0.00072 2.2 10.4 0.0 21 47 241 267 237 272 0.85 5 8 0.012 36 6.5 0.1 21 43 269 291 264 296 0.89 6 8 0.00051 1.6 10.8 0.1 21 51 297 327 290 328 0.85 7 8 0.00011 0.32 13.0 0.1 21 43 325 347 320 352 0.89 8 8 0.015 47 6.1 1.6 21 45 353 377 348 380 0.89
Sequence Information
- Coding Sequence
- ATGTCtaatttaattgatatttgttttatttgccTCAAACATTGCAACAATCTTGTAATTATCACGTCTCAAACAAGAAATGGACCAAGTTTTGAagataaactaaaatattttctgccTGGACTTgaACTTAGTTCTGATATTGCGAAATACATTTGTGCCGAATGTGGAAGTGATTTGAATAAAACTTacgaattcaaacaaaaatgcttacaaaatataacaacataCGAAAAGTATGCTCAACAGGTAACCACGACAGATTCTTGTAAATCTGATTTTGTGTGTAAACAAGAAGTGATATCAGATGAAGATAATTATGAAacgaatattttggaatgtaaAAGTGAAATAACTGCAGACAAAGCACAAATAGAAGAAGTTTTTATTAAAGAAGAATTGCATGAAATTAAAGGAGAAATATGTGGacaaaaaattttggaaaatccTACGTCATCAAATCCTGCAAAGAAAAGGCCATATACATGTGATTTTTGCAATAAATCGTTCGGGCAATTGAGCAATTTAAAAGATCACCTTCCAAAACATACTGGCgcaaaaccatttacttgtgaagtgtGCAGCAAATCATTTGGCCGCATTTATACTTTAAAGAAGCATAAATTATTGCACACTGGCGATAAACCACATACTTGTGAAGtctgcaacaaatcatttagaCAGATGGACCATTTAAGAAGGCACCAGTTAACACACTCCGGCGAAAAACCATTCTCATGTGATGTTTGCAACCAGTCATTCCGACATTCGCATAATTTGAAGCTGCATAAACTGCTACACACTGGCGAAAAACCgcatacttgtgaagtttgccaTAAATCGTTTAGCGTTTTGCGTGATTTAATACGGCACCGTTTGATACACACAGGAGAAAAACCATTCACCTGTGAAATTTGCAGCAAATCTTTCAGGCAATTTACAACTTTAAAGTACCATAAACGactacacactggtgaaaaaccgtttacttgtgaaatttgcaatacTTCATTCCGACATTCTAAATCTTTGAAGCAGCATAGATTGCATCACACTGGGGAAACGCCACACAGATGTCGCACGTGCGACGCATCTTACACTTCCAGACAAAATTTGCAGAGACATTTGAGAATATATCCCAGCcatgaagaatataaataa
- Protein Sequence
- MSNLIDICFICLKHCNNLVIITSQTRNGPSFEDKLKYFLPGLELSSDIAKYICAECGSDLNKTYEFKQKCLQNITTYEKYAQQVTTTDSCKSDFVCKQEVISDEDNYETNILECKSEITADKAQIEEVFIKEELHEIKGEICGQKILENPTSSNPAKKRPYTCDFCNKSFGQLSNLKDHLPKHTGAKPFTCEVCSKSFGRIYTLKKHKLLHTGDKPHTCEVCNKSFRQMDHLRRHQLTHSGEKPFSCDVCNQSFRHSHNLKLHKLLHTGEKPHTCEVCHKSFSVLRDLIRHRLIHTGEKPFTCEICSKSFRQFTTLKYHKRLHTGEKPFTCEICNTSFRHSKSLKQHRLHHTGETPHRCRTCDASYTSRQNLQRHLRIYPSHEEYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470521;
- 90% Identity
- iTF_00470290;
- 80% Identity
- iTF_00470290;