Dqua010921.1
Basic Information
- Insect
- Dromius quadrimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963989225.1
- Location
- OZ022325.1:66836747-66838195[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3 9.2e+03 -1.2 0.1 20 34 67 80 50 95 0.58 2 13 2.9 8.9e+03 -1.2 0.0 25 43 97 115 81 120 0.80 3 13 0.0023 7 8.8 0.1 21 48 121 147 113 151 0.88 4 13 0.0005 1.5 10.9 0.0 21 51 177 207 174 208 0.88 5 13 0.00094 2.9 10.0 0.1 21 48 205 232 203 236 0.88 6 13 0.016 48 6.1 0.0 22 52 253 282 250 283 0.83 7 13 0.81 2.5e+03 0.6 0.0 22 47 280 305 277 311 0.81 8 13 1.4 4.3e+03 -0.2 0.1 21 32 307 318 302 334 0.80 9 13 0.028 85 5.3 0.0 21 43 335 357 330 362 0.91 10 13 0.00048 1.5 10.9 0.0 21 45 363 387 359 391 0.90 11 13 0.023 71 5.6 0.0 21 43 391 413 387 423 0.79 12 13 0.6 1.8e+03 1.0 0.0 21 43 419 441 417 449 0.88 13 13 0.053 1.6e+02 4.4 0.1 26 43 452 469 446 474 0.90
Sequence Information
- Coding Sequence
- ATGTCACGTCCTGAATTTGTGTGTgtaaaagaagaaatatttgatgacaTTTCAGAACCACAAAATGAAGTGGTTGATAGTAAAGAATGcattattaaagaagaaaaaaaggAATTGGAATTGGATGATGGATTAGCGTCATTACTGCATGAAGTTAAAGAAGAAAAACCTGAATCAGATGCCACTGAAAACGAAAATATTAGCGAACAATATGAATGTGATATATGTCACGAAATTTATCCTTCTAAAGTGAAATTAAGCAGCCATATCCGCTCACACCCGAAAAaattcacttgtgaagtttgcaacaaatcattccaattatcatcatatttaaataagcataaacttatacacactgaaGAAAAACCAtacacttgtgaagtttgtaacaaaTCGTTCCGACGTCCGTCAAATTTAAAGGTGCATGAACTTAtgcacactggtgaaaaacgaTTCAATTGCGACGTTTGCAACAAAGCATTCGGTCATTTATCGCATTTAAAGATCCATAAATTTATACACacaggtgaaaaaccatttacttgcgACGTTTGCAACAAAACATTCGGACAGTCATCACATTTGAAGAAGCATAAACgtctacacactggtgaaaaaccatttagtTGTGACGTTTGCAATAAAACATTCAGAAGCTCGTCGAATTTAAAGGCGCATAAAATTATACGCACTTGTGAAAAATCATTCCGAGAggcaattaattcaaaaattcataaacttatacacacgaCCGAAAAACTATTTACTTGTGACGTTTGCCACAAAACATTTAAACAGTCATCACAATTAGACGatcataaacttatacacaccaAAAAACCATTTAATTGTGacgtttgcaacaaatcattcagcaGGTCAACTTATTTAAAGAACCATAAACTcctacacactggtgaaaaaccattcgcttgtgaaatttgcaacaaatcattcgcGGAGCTGTCAGTTTTGAAAAACCacaaacttgtacacactggtgaaaaaccattctcGTGTGACGTTTGCAACAAAGCATTCAGTAATTCATCAAACTTAAAGACTCATAAATTTATACACACAGGTGAAAAACCATACACGTGTGacgtttgcaacaaatcattcagacaatcttcatctttaaataatcataaaaatgtacacactggtgaaaaaccatccACTTgtgatatttgtaataaatcattcagcAGGGCTTCATATTTAAAGAgccataaacttatacacactggagAAAAGCCTTTTAGTTGCGATACTTGCAACAGATCATTCAGGGAGCTGTCAGATTTGAAAAAGCATGAAATTGTACACACTGATGGAAAATCTTTCAATTGTGacatttgcaataaatcattcagacattCGCGGACTTTAAAAGTgcataaaatttcgcacaataCTGAAAACACAGAAACCAACatgtaa
- Protein Sequence
- MSRPEFVCVKEEIFDDISEPQNEVVDSKECIIKEEKKELELDDGLASLLHEVKEEKPESDATENENISEQYECDICHEIYPSKVKLSSHIRSHPKKFTCEVCNKSFQLSSYLNKHKLIHTEEKPYTCEVCNKSFRRPSNLKVHELMHTGEKRFNCDVCNKAFGHLSHLKIHKFIHTGEKPFTCDVCNKTFGQSSHLKKHKRLHTGEKPFSCDVCNKTFRSSSNLKAHKIIRTCEKSFREAINSKIHKLIHTTEKLFTCDVCHKTFKQSSQLDDHKLIHTKKPFNCDVCNKSFSRSTYLKNHKLLHTGEKPFACEICNKSFAELSVLKNHKLVHTGEKPFSCDVCNKAFSNSSNLKTHKFIHTGEKPYTCDVCNKSFRQSSSLNNHKNVHTGEKPSTCDICNKSFSRASYLKSHKLIHTGEKPFSCDTCNRSFRELSDLKKHEIVHTDGKSFNCDICNKSFRHSRTLKVHKISHNTENTETNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470143;
- 90% Identity
- iTF_00470143;
- 80% Identity
- iTF_00470143;