Darc021955.1
Basic Information
- Insect
- Drepana arcuata
- Gene Symbol
- -
- Assembly
- GCA_016069955.1
- Location
- JACCPG010005123.1:3149-8275[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0099 0.84 10.6 6.1 1 23 53 76 53 76 0.97 2 17 0.00033 0.028 15.3 0.2 3 23 87 108 86 108 0.97 3 17 0.0089 0.76 10.7 0.3 2 23 121 143 121 143 0.97 4 17 0.00094 0.081 13.8 1.1 1 23 152 175 152 175 0.96 5 17 9.2e-05 0.0078 17.0 1.5 1 23 187 210 187 210 0.97 6 17 0.00012 0.0099 16.7 0.6 2 23 240 262 239 262 0.96 7 17 0.0006 0.052 14.4 1.6 2 23 272 294 271 294 0.96 8 17 0.039 3.3 8.7 0.6 3 19 300 316 299 319 0.93 9 17 0.00058 0.049 14.5 0.5 2 21 324 343 323 346 0.94 10 17 0.92 78 4.4 1.6 3 23 356 377 355 377 0.90 11 17 0.00045 0.038 14.8 2.9 1 23 382 405 382 405 0.94 12 17 9.8e-05 0.0084 16.9 1.7 2 23 417 439 416 439 0.94 13 17 0.0076 0.65 11.0 0.4 1 23 462 485 462 485 0.94 14 17 0.0053 0.45 11.5 1.1 2 23 519 540 518 540 0.97 15 17 8.1 6.9e+02 1.4 0.7 3 23 548 570 547 570 0.87 16 17 0.013 1.1 10.3 0.1 1 23 606 628 606 628 0.97 17 17 0.055 4.7 8.3 1.9 1 23 634 657 634 657 0.97
Sequence Information
- Coding Sequence
- ATGGTGGAAGGTCCTCACAGTGAAGACAGCCAGGAGCCAGCTGTAAAGATTGAGCAACAAAACCATGAAGCAGTCCTACTTACCTTTGAGAGTGTAATCAATGACAAGCAAGACTTCAACTATACAGAAGGGATGCTTCCGGAATTGGCACCCACGCATGTCTGCAAAGTGTGTCATCTAGTCTTCCAGTCCACGAAAACCCTTAAAATGCACCAGAAAAGAAAGCACAAATCTTTTAGAAAGTCCTTTAAGAATATCTGCGACTATTGCGGCATGTCATACGAAATGAAGAACAGCTTGGTGGCACACATAAAGAGGAAACATGGACCAAACTCCTTGCCTGATGACAGAGAGGAACGTACTTGTGAAATTTGTGCTCTAGTGTTTAAAGGTTTGCCCAGGTTGAGAATGCATATGAGAAGGAAACACGATGCGTTCGAAGACACATTCAAATATGCATGTGATCACTGCGGACTCACCTATGACAAATATAGGAGTTTGATTGTCCACGTACAAAGGAAGCACTCCGGTGTGACCAAGCCAGAAGTGAACCAATGGTACAACTGCCCATTTTGCCCTAAAATCTTCTCCAAAAGAGAGACTTACTCGAGACATGTACAAAGGAATCATAAAATTGAAGATGAAGACAATGTGAAAAAGGAATCAGAGCTGAGTAAGGACTTAGAGGGAAGTAAAAATGCCCAGACAGGAGAAATTTCCTGTAAAGAGTGCCCCTTAGTCTTCTCATCTGTCAACTTTCTAAAGCTACATATGAGACGGAAACACAACGCTCTGAAGGAAGATTTCCGGTTGAAGTGCCGGATATGTAACTTGTCATACAATAAAATCGAAAGCCTAAAGCGACACGTGCGTAGAAAACATGACAATAGTTCCTTCTGTGAGGTGTGCAACAAAAACTTTGACAGCAAAGAAGCATACCTCTCCCATTCTCATGTGAAGGTGATAAAGGAGTGCTCAATTTGTGGCTTGATCTTCGCTTCCCAGGGCGGGTTGGCCAAGCATCTGAGGTGTACGCACAAGATAGACACTGCTAAGACTGTGTTCTGCAGTATATGCAACGAAGGATTCCACAATATGCGACAGCTAAAGCCACATTTTTTAAAAGTGCATTTAAAAGTGACGTACACATGCATGTATTGCAAGCGGGTTTTCAAGGCAAAGGAGAGCTACAGACGACACATATTATTCAAACATCCTGTTAGCAACTACGGGGGCCGAGAGATGCAAAAGTGTGAACAGTGCCCTGAAACTTTCAAGGACGAATTTGACCTCTGCCGCCATATTAACTTTGTGCACGGTAGCGGCGACGCGTCCAACACAGGTGTTGCTATAAAAGTAGAAGAACAAGATGTAAAAGATTCATTCCAATGCACAAGGTGTCCGGATCTATTCATGACATGGGATAATTTAAAAGCACATTACGAGCAAAATCATCAGCTGACTAACAAAACGCAATGTCAGATGTGTGGAGACTTAATACCTGTCAATGATCTAGATAAACACATTAAGAGTACACACACAGACAACACGATGCAGTGTAAATATTGTGAGTTCAAAACAGATGTGAGAGTGAGTTTGACTCAACACATGCTGCGGCATAAGAATGCCAGCACCATGAACTGTGATTTCCCAGGTTGTAAATACAAGACTTTTTATGAAATTGCGATGGAGAAACATAAGAAAAAACACATAGACCAGGGCGTAAAGCTGCAGTGTACACAATGCAGTTTCCAAACTATGAATAAATATATACTAAAGTATCATGAAGAGGCGCACGAAACGGGCAAAAAGCGATACATGTGCGACCAATGTGACTACGCGACTATTCTACCAGCGAACTTGGTGCAGCATAAATATAAACACTCAGCGGAAAAGAGGTTTAAATGCGAAGTGTGCCCGTTTGCAACCAAGTACAACACCTCCCTACGGTTTCATGTAAGGAAGAAGCACTGCGATCTCCCTACGGTCAGTTAA
- Protein Sequence
- MVEGPHSEDSQEPAVKIEQQNHEAVLLTFESVINDKQDFNYTEGMLPELAPTHVCKVCHLVFQSTKTLKMHQKRKHKSFRKSFKNICDYCGMSYEMKNSLVAHIKRKHGPNSLPDDREERTCEICALVFKGLPRLRMHMRRKHDAFEDTFKYACDHCGLTYDKYRSLIVHVQRKHSGVTKPEVNQWYNCPFCPKIFSKRETYSRHVQRNHKIEDEDNVKKESELSKDLEGSKNAQTGEISCKECPLVFSSVNFLKLHMRRKHNALKEDFRLKCRICNLSYNKIESLKRHVRRKHDNSSFCEVCNKNFDSKEAYLSHSHVKVIKECSICGLIFASQGGLAKHLRCTHKIDTAKTVFCSICNEGFHNMRQLKPHFLKVHLKVTYTCMYCKRVFKAKESYRRHILFKHPVSNYGGREMQKCEQCPETFKDEFDLCRHINFVHGSGDASNTGVAIKVEEQDVKDSFQCTRCPDLFMTWDNLKAHYEQNHQLTNKTQCQMCGDLIPVNDLDKHIKSTHTDNTMQCKYCEFKTDVRVSLTQHMLRHKNASTMNCDFPGCKYKTFYEIAMEKHKKKHIDQGVKLQCTQCSFQTMNKYILKYHEEAHETGKKRYMCDQCDYATILPANLVQHKYKHSAEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00468400; iTF_00724172;
- 90% Identity
- iTF_00468400;
- 80% Identity
- -