Flac017637.1
Basic Information
- Insect
- Falcaria lacertinaria
- Gene Symbol
- -
- Assembly
- GCA_951449985.1
- Location
- OX602134.1:5159685-5162274[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.013 0.93 10.4 6.1 1 23 137 160 137 160 0.97 2 16 0.00047 0.033 15.0 0.1 3 23 171 192 170 192 0.97 3 16 0.0064 0.45 11.4 0.7 2 23 205 227 205 227 0.97 4 16 0.0012 0.087 13.7 1.4 1 23 236 259 236 259 0.95 5 16 3.7e-05 0.0026 18.5 1.0 1 23 272 295 272 295 0.96 6 16 7.3e-05 0.0051 17.5 0.6 2 23 325 347 324 347 0.97 7 16 0.0012 0.086 13.7 1.2 2 23 357 379 356 379 0.96 8 16 0.07 4.9 8.2 3.1 3 19 385 401 384 404 0.93 9 16 0.00077 0.055 14.3 0.5 2 21 409 428 408 431 0.94 10 16 0.013 0.95 10.4 1.2 3 23 441 462 440 462 0.96 11 16 0.0019 0.13 13.1 2.6 1 23 467 490 467 490 0.94 12 16 3.2e-05 0.0023 18.6 1.0 2 23 502 524 501 524 0.96 13 16 0.0022 0.15 12.9 0.7 1 23 544 567 544 567 0.94 14 16 0.24 17 6.5 1.1 2 23 601 622 600 622 0.97 15 16 0.018 1.3 10.0 0.1 1 23 688 710 688 710 0.96 16 16 0.27 19 6.3 2.7 1 23 716 739 716 739 0.97
Sequence Information
- Coding Sequence
- ATGGCGAACTTAGAGCCAAACAAAGTGACAGATACTCGTCAAGACCCAACATCGTTTCTGCCGGATGAACCAATGTGTTATGAGAtcaaaaagaagaagaaaaaaaagaaacgcTCCCTAGAGGATCCCTTGAAGGATAGCGAGGACAAATATGTGGCGGTCATCGAACCAGCTCTGGACCCCGAAGTTAATATAAAGGTTGAGAACATTGAAGTGGAGTTGGACTTTAATGATTTTGCAGACAACTCAGGGTTGATGGTCGAGGGTCCTCACAGTGAAGACAGCCAGGAACAACCCGTAAAGGTTGAGCAAGCAAGCCATGATGCAGTCCTACTTACCTTCGAGAGTGTGATAAACAATCGACCAGTGTACAACTACACAGAGGTGATAGCAGAACTAGCACCCACTCACGTGTGTAAAGTGTGCCATCTAGTCTTCCAGTCGACGAAAACCCTTAAAATGCACCAGAAAAGAAAGCACAAATCGTTCAGAAGGTCCTTCAAGAATATCTGTGACTATTGCGGCATGGCATATGAAATGAAGAACAGTCTAGTCGCGCATATTAGGAGGAAACACGGCCCAAACTCTATACCAGATGACAGAGAGGAAAGGACTTGTGAAATTTGTGCGCTTGTCTTTAAAGGTTTGACTAGGCTGCGTATGCACATGCGCAGGAAGCATGGCGCTTTCGAAGACGCCTTCAAGCATGCATGCCAGTATTGTGGACTCACCTACGATAAGTATAGAAGCCTGATAGTCCACATACAAAGAAAGCATTCCGGTGCAACGAAAACTGAACAGACACAACAGTGGTTCAACTGCCCGTTTTGCCCTAAAGTATTCTCTAAAAGAGAGACTTACGCAAGACACGTACAAAGGAACCACAAGATTGTCGATGAAGATGCCATGAAGCAAGAAACAATAAAGAAAAACGACTTGGAGGGATGTACAGACGCACACACAGGTGAAATAACGTGTCAAGAATGCCCCTTAGTGTTCTCGTCTCTGAATTTCTTAAAACTGCACATGAGGAGAAAGCACAATGCGTTGAAGGAAGATTTCCGATTGAAGTGTAGGATATGTAATCTTTCGTATGATAAAATTGAAAGCTTGAAGCGACATGTGCGGAGAAAACATGACAATGGCGCCCACTGTGACGTTtgcaataaacattttgataatCAGGAGACGTTTTTAAACCATTCGCATGTGAAGGTGATAAAGGAATGCTCAATTTGCGGTTTAATATTCGCGTCCCAAGGAGGATTGGCTAAACACCTGCGCTGTACGCATAAGATTGATACTCCAAAGACAGTGTTTTGCAATATTTGCAATGAAGGGTTCCACGATAAAAGACAGTTGAAGCCCCACATCTTAAAAGTGCATTTAAAAGTGTCATACACGTGCAGAATTTGCAAGCGAGACTTTAAAGCGAAGGAGAGTTATCGGCGCCACATTCTGTTCAAACATCCTacggaaaaaatattgaatgcaGAGATGCAGAAGTGCGAACAGTGTCCAGAAACATTTAAGGACGAATTTGAACTCTGCCGCCATATAAATATAGTCCACCGCAATACGGGTGAGCCGGCTGtggaaataaagaaagaagaagataCTAAAGATTCATTCCAGTGCACAAAGTGTCCGGAATCTTATTTGACGTGGGATCAATTGAAGTTGCACTACGAGCAAAACCACCAGTTGATCAACAAAACCCAATGCCAAATGTGTGGCGACCTGATACCTAGCAATGAACTAGAGAAGCATATTAAACAGATGCACACAGACAACACAATGCAGTGTCAATATTGTGAGTTCAAAACTGATGTTAAGGCGAGCATGACTCAGCATACACTGAGGCATAAGAATGCGACCACGATTAACTGTGAGTATCCCGGCTGTAGATATAAGACGTTCTACGAAGGTGCAATGGATAAGCACAAGAAGAAACATGTAGATCAAGGCGTTAAGCTGCAGTGTACACGGTGCCCGTTCCAaactatgaataaatatatcctTAAATATCATGAGGAAGCACATGAAACTGGTAAGAAGAGATATGCGTGTAACCAGTGTGATTATGCAACGATCCTACCTGCTAATTTAGTGcaacacaaatataaacattctacagaaaagagGTTCAAGTGTGAGGTATGCTCCTTTGCCACTAAGTACAACACATCTCTAAGATTCCATGTCAGAAAGAAACACTGTGATCTCCCTACGTTCGGTTAA
- Protein Sequence
- MANLEPNKVTDTRQDPTSFLPDEPMCYEIKKKKKKKKRSLEDPLKDSEDKYVAVIEPALDPEVNIKVENIEVELDFNDFADNSGLMVEGPHSEDSQEQPVKVEQASHDAVLLTFESVINNRPVYNYTEVIAELAPTHVCKVCHLVFQSTKTLKMHQKRKHKSFRRSFKNICDYCGMAYEMKNSLVAHIRRKHGPNSIPDDREERTCEICALVFKGLTRLRMHMRRKHGAFEDAFKHACQYCGLTYDKYRSLIVHIQRKHSGATKTEQTQQWFNCPFCPKVFSKRETYARHVQRNHKIVDEDAMKQETIKKNDLEGCTDAHTGEITCQECPLVFSSLNFLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHVRRKHDNGAHCDVCNKHFDNQETFLNHSHVKVIKECSICGLIFASQGGLAKHLRCTHKIDTPKTVFCNICNEGFHDKRQLKPHILKVHLKVSYTCRICKRDFKAKESYRRHILFKHPTEKILNAEMQKCEQCPETFKDEFELCRHINIVHRNTGEPAVEIKKEEDTKDSFQCTKCPESYLTWDQLKLHYEQNHQLINKTQCQMCGDLIPSNELEKHIKQMHTDNTMQCQYCEFKTDVKASMTQHTLRHKNATTINCEYPGCRYKTFYEGAMDKHKKKHVDQGVKLQCTRCPFQTMNKYILKYHEEAHETGKKRYACNQCDYATILPANLVQHKYKHSTEKRFKCEVCSFATKYNTSLRFHVRKKHCDLPTFG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00467624;
- 90% Identity
- -
- 80% Identity
- -