Darc020680.1
Basic Information
- Insect
- Drepana arcuata
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_016069955.1
- Location
- JACCPG010009632.1:233958-248353[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.18 4.2e+03 -2.9 0.2 234 280 51 99 47 101 0.55 2 3 3.4e-76 8.1e-72 242.5 22.9 1 293 118 390 118 396 0.87 3 3 1 2.4e+04 -6.8 11.9 1 48 393 439 391 467 0.53
Sequence Information
- Coding Sequence
- ATGGGGCAGAGAGACGAGGCCGCCACGCCTGATAACAGCGATGAGGAGAGCGGTGACGCTTTCACTGATGGTGATTTCGGTGATTCCGAAGAAGAAACGATCGTAGATCAACATATCGACGCAAATTCCTCTAATATAACAATTAACGAAACTGTGAACGAAGAGGTGACTAAGATGAACGGTTCTATACAGGACGTACAAGTCAACGGCGCTGAGAATAGTATCAAAGTTAATGGACGACGTGATAGTGCCGTAGATAATCATAGTGAAACCATAACAGAACTGAGGAGGGACTCCCACGGTGAACAGAATCCATCAATTGTCGGAATTCTCGGTGACCAACAGAATCATGCGGAGCAGCGCCTGGCGGCACGGCGAGCAGCGCGGGCCGAGGCGCGTGAGATACGCATGCGCGAGCTGGAGAGGCAGCAGCGGGAACAGGAAGACCATGCAGACAAGGCATATGACATGTATGCAGAGACAGTGGGCCGCCGCGGAGGCACTCGGCTGGCCGCCCTCAGCCCCGCCGTCGTGCACTCGCCGAGGCGGAGCTCGGAGGACTCCCCCGATGACTCGTTCAGCGTTAAAGACCTCAGGCACGAGCTCAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCCGCGCTCGGGTACCAGCTGGAGCTGCTCAAGGACCGGATAGAGGAGCTGCACGAGGAGTATGCGCAACTGCAGCGCGAGCACAAGGAGAAGTGCTCGGCGCACGAGCGGCTGCGGCGCGAGCACGCGTCGCTGGAGCGCGAGGTGGGGCTGGCGCGGGGCGCCGTGCGCGCGCGCGAGGCGGCGGCGCGCGCGGCGGGCTTCGCCTTCGTGGACGCCGCGCCCGCGCCCGGCGAGCCCGCGCCCGCGCTCGCGCTCGTCTCGCACCACTCCGAGCAGCTGCTCAACGACGCCGGCGAGGGCACGCTAGATGTCCGGTTGCAGAATCTTTTGAGCTCGAAGCAATCCTTGGAGTCTGAAGTACGTAAGCTGAAACTGCAGCTGAATGAGGAGCGCGCCGCTCGTCAAAATGGCGTCGCTAACCATCACGACCAAGAGTATGAGAGCGAATTGGAGGCGCTGCGGCGCGCGGTGGCGGAGGCCAAGGGGCGCGCGGCGCGGGCGGAGGCGGAGGCGGCGCTGGGCGCGGCGGGCGTGGCGCGGCTGGAGGCGCAGGTGGCGAGGCTGCGCGCGCGGCAGGACCACCAGGACGGCCACGAGGAGGCGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGGGAGGCCAGGGAGGCCCTCAACCGCGTGGAAGAACTGGAGACGGAGAACAGTCATTTGACGAAACGCCTCGACAAACTCAAGAATGCCAAGTCAGCGCTCCTGAAGGACCTGTGA
- Protein Sequence
- MGQRDEAATPDNSDEESGDAFTDGDFGDSEEETIVDQHIDANSSNITINETVNEEVTKMNGSIQDVQVNGAENSIKVNGRRDSAVDNHSETITELRRDSHGEQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGTRLAALSPAVVHSPRRSSEDSPDDSFSVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLRREHASLEREVGLARGAVRAREAAARAAGFAFVDAAPAPGEPAPALALVSHHSEQLLNDAGEGTLDVRLQNLLSSKQSLESEVRKLKLQLNEERAARQNGVANHHDQEYESELEALRRAVAEAKGRAARAEAEAALGAAGVARLEAQVARLRARQDHQDGHEEALKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00820103;
- 90% Identity
- iTF_00468191;
- 80% Identity
- -