Dpar001130.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:8728058-8731234[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.014 18 7.0 0.0 21 46 8 33 5 36 0.90 2 19 1.3 1.7e+03 0.7 0.0 21 51 65 95 63 96 0.82 3 19 0.051 64 5.2 0.1 23 47 95 119 88 124 0.84 4 19 0.088 1.1e+02 4.5 0.1 22 48 122 147 118 153 0.86 5 19 0.53 6.7e+02 2.0 0.1 20 44 177 201 166 205 0.82 6 19 0.12 1.5e+02 4.0 0.5 18 52 203 237 200 240 0.86 7 19 0.6 7.6e+02 1.8 0.2 21 48 319 345 315 351 0.78 8 19 3.7 4.7e+03 -0.8 0.1 21 44 347 370 344 375 0.70 9 19 0.063 80 4.9 0.3 22 47 440 465 428 472 0.82 10 19 0.74 9.4e+02 1.5 0.1 21 44 467 490 463 497 0.88 11 19 0.075 94 4.7 0.4 5 44 479 518 476 523 0.77 12 19 0.0088 11 7.7 1.3 22 48 525 550 520 552 0.87 13 19 0.028 35 6.1 0.2 20 51 551 582 549 585 0.84 14 19 0.0086 11 7.7 0.0 21 44 608 631 602 636 0.88 15 19 0.012 15 7.3 0.4 21 49 637 664 633 668 0.88 16 19 0.15 1.9e+02 3.7 0.3 18 48 662 691 661 698 0.83 17 19 1.1 1.3e+03 1.0 0.1 23 44 695 716 690 720 0.88 18 19 0.17 2.2e+02 3.5 0.4 18 44 775 801 770 806 0.86 19 19 6.4e-05 0.081 14.5 0.1 21 45 806 830 802 833 0.91
Sequence Information
- Coding Sequence
- ATGCATGAGCTGACACAtgccgacgagaaaccgttcggaTGTTCTATTTGCGATCACCAAATCCGAGGAGCCGAGGCATTAAAGCAGCATATGTTACTACACAGCGACGACGACAAGTCGTTCGGTTGCGATCGTTGTGATTTCAAGACGCAAACGCAAGACTCGTTGAAAACCCACCTGTTGCTGCACACCAATGAAAAACCTCTCAAATGTGGCCTTTGCGATTACGAATGCCGGACGACAACAAACTGGACGAAGCACATATTAAGCCACGGCGAAGCGAAGCCGTTCGGCTGTGacctctgcgattacaaatgtcgcgAATCAAGAtatttgaagcagcacatgttaatacacaccggcgataAGCCgatcagttgcgatctttgcgatttcaaGTGTAGACAACGCGGAAGTATGAAGCGGcacatgttaaagcacaccggccaGAAGCCCTTCAGCTGCagtctttgcgattttaaatgtcGGTCCGCCGGAGATATAAAGCAGCACAAGGCGAAACATACTGACCGCGAGAAGCCCTTCAGTTGCAGCCTTTGCGAATTTAAGTGTCGGAAAGCCGGATACTTGAAACAGCATGTGGTGAGGCACGACAGCGAGAAGCCGTTCTGCTGTGGACATTGCGATTATAAAAGTCATCACCTCGCAAAGCTGAGGAGGCACATGTTAATCCATACCGACTCGAAGCCGTTCGGTTGCGATTTTTGCCCTTACAAATGTCGTAGCTCGGAAGGTTTGAAATCGCACGGCTTAATACACACCGCCGGCAGCGTCGAGTTCAGCTGCGATCAGTGCGATTTTAAAACGCGACATCGCACATCGTTGAGAAACCACGAGTTGgtgcacaccggcgagaaacgaTTTGCTTGTGACGTTTGCGGCCACAAGTCGCGAACGCGCGCGGATTTGAAGGTTCACCTGTTaacgcacaccgacgagaagccgatTAGTTGCaacctttgcgattacagatgCCAGTCAAAATCGTACCTGAAAAGGCACATGTtgaaacacaccggcgagaagccgtttagttgtgcgCTTTGCGATTATAGATTCGCTGTACGCGGGAGATTGAAACGGCACATGTTGACGCACACTAGAGAGAAGTTCAAGCGCCAAGACGACAAAAAAACATACGAATGTCGCCTGTGCGATTCTAAATTCCAATCGCAAGGGTGTTTGCGCGAGCACGTGCTgaaacacaccgacgagaagctaTTCCGTTGCGCCGTCTGCGACTATAAATTTCAAGACATCGAAAAATTGAAGCGACACGTGTCGACGCACGTCGGAGAGAAGAAATTCGGCTGCGAGCTCTGCAACTTCAAATGCCAACAATCCGAATTATTAAGACGGCATGTGCTGAtacacacgggcgagaagccgttgTGTTGTAATCTGTGCGATTACAGGTCGCGACATCCGGGAACCCTGAAACGGCACATGCTAATTCACACCGACGAGAAGTCGATcggttgtgatctctgcgattacaaatgccgacaaaTTGCGTCGTTAAAACGGCACATGTTTGTGCACACTGGCGGTGAGAAGTCATTAGCTTGCGCTtattgcgattacaagtgtcgaAAACACCGAAATCTGAAGCGTCACATGTTGAGACACACCGATGAGAAACCGTTCAGCTGTGATAtctgcgattataagtgccgggAACTCGCGTATTTAAAGCGGCACATGCTGATACACACCGGCAACAAACCGTTcggttgcgatctttgcgattacaagtgtcggCAAGTCGCGAAACTGAATCTGCACAGGTTAActcacaccgacgagaagccgttgagttgtgatctttgcgattacaaatgtcgacaGGGTGTAGATTTGAAGCGGCACATGTTGATGCACACGGGCGACGAGAAACCGTTTAGTTGTAATTTCTGCGATTACAGGTGCCTACAGGCTGTGAATTTGAAACGTCACATCTTGAGACACACCGGTGaaaagccgtttagttgtgatctttgcgctTACAGATGCCGCCAGCTCATTTCTTTAAAGCATCACATGCTGACGCACACCGACAAGAAACCGTTCGGTTGCGACCTTTGCGACTACAAATGCCGAAGGGCCGAAGTGCTGAAACGGCATATTTTAACGCACACCGACGAGGAGCTGTTCAgatgtggtctttgcgattataaaagtcGAGAACTCGCGATGGTAAAGCGGCACATGTCAGTGCATGCGGGGGTTAAGAAAATATTCGTTTGTAATCTGTGCGAGTACAAGACGCGGTTGTCCGTGGAAATAAGTCGTCACGTGTTGaggcacaccggcgaaaagccgATTGGTTGTGAGCTTTGCAGTTATAAATGCGTTCAGCCCTCACAATTGAAGCGGCACATGTTGACGCACActgacgagaagccgttcagttgtaataTTTGCGCTCATAAATTTCGAAGTTCCAGCAACTTGAAACGTCACTTGCTAATACACCGTTAG
- Protein Sequence
- MHELTHADEKPFGCSICDHQIRGAEALKQHMLLHSDDDKSFGCDRCDFKTQTQDSLKTHLLLHTNEKPLKCGLCDYECRTTTNWTKHILSHGEAKPFGCDLCDYKCRESRYLKQHMLIHTGDKPISCDLCDFKCRQRGSMKRHMLKHTGQKPFSCSLCDFKCRSAGDIKQHKAKHTDREKPFSCSLCEFKCRKAGYLKQHVVRHDSEKPFCCGHCDYKSHHLAKLRRHMLIHTDSKPFGCDFCPYKCRSSEGLKSHGLIHTAGSVEFSCDQCDFKTRHRTSLRNHELVHTGEKRFACDVCGHKSRTRADLKVHLLTHTDEKPISCNLCDYRCQSKSYLKRHMLKHTGEKPFSCALCDYRFAVRGRLKRHMLTHTREKFKRQDDKKTYECRLCDSKFQSQGCLREHVLKHTDEKLFRCAVCDYKFQDIEKLKRHVSTHVGEKKFGCELCNFKCQQSELLRRHVLIHTGEKPLCCNLCDYRSRHPGTLKRHMLIHTDEKSIGCDLCDYKCRQIASLKRHMFVHTGGEKSLACAYCDYKCRKHRNLKRHMLRHTDEKPFSCDICDYKCRELAYLKRHMLIHTGNKPFGCDLCDYKCRQVAKLNLHRLTHTDEKPLSCDLCDYKCRQGVDLKRHMLMHTGDEKPFSCNFCDYRCLQAVNLKRHILRHTGEKPFSCDLCAYRCRQLISLKHHMLTHTDKKPFGCDLCDYKCRRAEVLKRHILTHTDEELFRCGLCDYKSRELAMVKRHMSVHAGVKKIFVCNLCEYKTRLSVEISRHVLRHTGEKPIGCELCSYKCVQPSQLKRHMLTHTDEKPFSCNICAHKFRSSSNLKRHLLIHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466621;
- 90% Identity
- iTF_00466621;
- 80% Identity
- iTF_00466621;