Dpar000660.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:3961977-3967109[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.066 83 4.9 0.2 20 45 101 126 89 131 0.80 2 9 0.16 2.1e+02 3.6 0.1 20 48 133 160 127 163 0.88 3 9 0.0012 1.6 10.4 0.0 10 52 179 221 174 222 0.89 4 9 0.0059 7.4 8.2 0.0 21 48 274 301 264 307 0.86 5 9 0.7 8.8e+02 1.6 0.0 21 48 302 329 299 332 0.91 6 9 0.0073 9.2 7.9 0.1 16 47 554 586 536 593 0.82 7 9 0.23 2.9e+02 3.1 0.0 18 45 724 751 716 759 0.84 8 9 0.0044 5.5 8.6 0.1 14 47 803 837 795 842 0.79 9 9 1.8 2.2e+03 0.3 0.0 22 50 840 868 837 870 0.88
Sequence Information
- Coding Sequence
- ATGTCTGATTCAGAAATAAAGAATGACTTAAATGAGAAGCCATTGCATTCCCTAAAAAGACATTTAATGTGGGAGTGTGACGAGACCATTGTAATGTACCCACTTCTCGGAGAAGAAATGAATTTGATTCAATACAAACTCTTGCGCAGATTGGCTGATAAGTCAATTACAGAAAGCGTGCCCGTTTTAAAGCCCAGAAGAGTATCGAAATTTTCTTCGGCCGCAAACTCgcaaacaaagaaaaactgTGATTTCAATTTCGACCGTTCCGGTACCATGAAAAAGCACGCCCTGACGCACGCCGGCGAAAAACCCTTCGCATGTCAACTGTGCGAGTACAGATCGACCGTGTCCGCGAATTTCAAGCGGCACCTGAGAAGGCACGCGATAGAAAACGAAGCCGAGAAGCCATTCGCTTGCGACCTCTGCAGTTTCAAAACGCACGACCCCTACAACCTGAAAAGACATGCGATCAGGCACGGCGGCGAGAAGCAGTTCCAATGCGACCGCTGCGGAAATAAGTTCGCCTCGCTCCCCGGATTAAAGACGCACCTGATGCGacacaccggcgaaaagccgCACGAGTGCAACATTTGCGGCTACAAGTGCAACCAGGTCGGCACGTTGAATCGACACGTCATGCTGCACACCGGCGCGAAGCCCTTTCAGTGCAACAAGTGCGATTACAGGGCCGCCATTAGGGGCAACCTCGTGAAACATATGGTCGTACATTCCGCGGAGAAACCGTTCAAGTGCGACGTCTGCGATTATAGAACGAACAGCGCCAAAAGCTTGAAAGCTCACAAGGTAACGCACACGGGCGAGAGGCCGTTTAAATGTGGCATTTGCGCCAAGAGGATGACCAGTTCGAAGAGCATGAAGAGACATCTGTTGATACATACGGGCGAGAAACCGTTTGCGTGCCGTCTCTGCGATTATAGATCCGAACAGATGGGAAATGTGAAAACACATATGAAACACAAACATAAGCAgtTTCTTGAGAAAAAAGTCACCGCTGAATTGATCGATTACGCAGATCCCTTGTTAACCGCCGGCGACAAAACGGGACGGAAGATGGCGCCAAATTCCGACGGCAAGCGTTTCAAATGTGAACTGTGCGATTTCAAGTGCACGCGCAAAATTAACCTGAAACGACACGTGCTGACGCACACCGGCGAGTACCCCTTCGGATGCGAATGCTGCCTTCACAGGTCCGCCACTTCCGCACAACTCGACGTGCACAAGTTGACACACACCGCTGCGAAGCAGTTTTCATGCGagctttgcgattataagtctGAGGTAGCTCGTTACTTTAAGAGGCACGTCAAGACGCACAGCGTCAAGAAGCCGTACCAATGCGACCGTTGCGGCAATCAGTTTAGAGTACTCAGCGTGTTGAAGTCGCACATGTTTCGCCATGACGGCGAAAAACCATACAAGTGTACCCAGTGCGATTATAGATCCACGCAAGTAGGCACGCTAAACCAGCACATGCtgacgcacaccggcgagaagcctttcCAGTGCAACCAGTGCGAGTACAGGGCGCACTTGAAGAAAAGCGTCACGATACACATGCTCACGCACACGAAGGAGAGGGCGTTCAAGTGCGACATTTGCGATCACAAAACGAAAACCTCGGCCGCCCTGAAGACGCACAAGCGGtcacacaccggcgagaaaccgtacAAGTGCAACGTCTGCGCGAAGAGGTTTAGCGTTTCCAGGGGTTTGACGAGGCACATgctaatacacaccggcgagaagccctACGCGTGCAACTTTTGTGATTACCGGTTACTTAAAAAATTCCTGACGGCtcaagaattaaaaacagaatacAAAAAGCCGTACGACTACTGCGGGCCGTTGAAATTCGAGCTCCCCGATTTTGGGCCGAACTGGTCCGCAAGGCACGTCTTGCCACATACCGGTGCAATGCCTCACGTACGTAAACGCGGTGATTGCAGACGCCTCCAACGTCTCCAGCCGGGGAAGAAAGGTCGGAAACGCGGCGTGGTCCAACTTGCGTGCGAGACGTGCGATTTTAGAACCACCAGGCCTTGCCACTTGAAGAAGCACGTGGCCACGCACGACAAGCCGTTCCAGTGCGATCGCTGCGGCATTCAGTTCGCGTCGTCCTCCACCTTGAAAACGCACATATTCCGTCATACGGGCGAGAAACCGCACAAGTGCGCCATTTGCGGCTACAAGTGCACCCAAATTGGAATATTAACGCGGCACATGATGACACACAGCGGCGATAAGCCTTTCCGTTGCAGCCAGTGCGAATACAGGGCGTGCAGCAGGGGAAACATAGACGCCCATATGGTTACGCATACGAAGGAGAAGGCCTTCAAGTGCGATATTTGCGAGTACAAGGCCAGGACTGCCGAGACCTTGAAGGTGCACAGGCGgtcgcacaccggcgagaaaccgtacCAATGCGACGTGTGCTTGCGCAGGTTCGGCATCTCCAGGGGTTTGAAGAGGCATATGTtcatacacaccggcgagaagccttaCGCGTGCAATTTTTGTGATTACAGGTCGACCCATGGGGAAAACGTGAAGACGCACATGAAACATAAGCATAAAGCGGAATACGCTCAAGAGCTTAACGTTACTAAATCTGATCCATCGCATGGATAA
- Protein Sequence
- MSDSEIKNDLNEKPLHSLKRHLMWECDETIVMYPLLGEEMNLIQYKLLRRLADKSITESVPVLKPRRVSKFSSAANSQTKKNCDFNFDRSGTMKKHALTHAGEKPFACQLCEYRSTVSANFKRHLRRHAIENEAEKPFACDLCSFKTHDPYNLKRHAIRHGGEKQFQCDRCGNKFASLPGLKTHLMRHTGEKPHECNICGYKCNQVGTLNRHVMLHTGAKPFQCNKCDYRAAIRGNLVKHMVVHSAEKPFKCDVCDYRTNSAKSLKAHKVTHTGERPFKCGICAKRMTSSKSMKRHLLIHTGEKPFACRLCDYRSEQMGNVKTHMKHKHKQFLEKKVTAELIDYADPLLTAGDKTGRKMAPNSDGKRFKCELCDFKCTRKINLKRHVLTHTGEYPFGCECCLHRSATSAQLDVHKLTHTAAKQFSCELCDYKSEVARYFKRHVKTHSVKKPYQCDRCGNQFRVLSVLKSHMFRHDGEKPYKCTQCDYRSTQVGTLNQHMLTHTGEKPFQCNQCEYRAHLKKSVTIHMLTHTKERAFKCDICDHKTKTSAALKTHKRSHTGEKPYKCNVCAKRFSVSRGLTRHMLIHTGEKPYACNFCDYRLLKKFLTAQELKTEYKKPYDYCGPLKFELPDFGPNWSARHVLPHTGAMPHVRKRGDCRRLQRLQPGKKGRKRGVVQLACETCDFRTTRPCHLKKHVATHDKPFQCDRCGIQFASSSTLKTHIFRHTGEKPHKCAICGYKCTQIGILTRHMMTHSGDKPFRCSQCEYRACSRGNIDAHMVTHTKEKAFKCDICEYKARTAETLKVHRRSHTGEKPYQCDVCLRRFGISRGLKRHMFIHTGEKPYACNFCDYRSTHGENVKTHMKHKHKAEYAQELNVTKSDPSHG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466645;
- 90% Identity
- iTF_00466645;
- 80% Identity
- iTF_00466645;