Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284475.1:3961977-3967109[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.13 12 8.0 0.5 5 23 82 100 81 100 0.95

2 23 0.0017 0.15 14.0 1.3 1 23 106 128 106 128 0.97

3 23 0.021 1.9 10.5 1.6 1 23 138 160 138 160 0.96

4 23 0.00059 0.054 15.4 0.4 1 23 166 188 166 188 0.98

5 23 0.0012 0.11 14.4 2.2 1 23 194 216 194 216 0.97

6 23 0.0033 0.31 13.0 0.1 1 23 222 244 222 244 0.97

7 23 0.00061 0.057 15.3 0.8 1 23 250 272 250 272 0.98

8 23 0.0084 0.77 11.8 0.9 1 23 278 300 278 300 0.98

9 23 0.32 29 6.8 2.3 1 23 306 329 306 329 0.95

10 23 0.00016 0.015 17.2 4.3 1 23 368 390 368 390 0.99

11 23 0.015 1.4 11.0 1.3 1 23 424 446 424 446 0.98

12 23 0.0023 0.21 13.5 1.2 1 23 452 474 452 474 0.98

13 23 0.00015 0.014 17.3 1.2 1 23 480 502 480 502 0.99

14 23 0.41 38 6.4 2.4 1 23 508 530 508 530 0.98

15 23 0.00027 0.025 16.5 3.3 1 23 536 558 536 558 0.99

16 23 8.7e-06 0.0008 21.1 0.6 1 23 564 586 564 586 0.99

17 23 0.0073 0.67 11.9 3.5 3 23 679 699 677 699 0.96

18 23 3.3e-05 0.003 19.3 1.0 1 23 703 725 703 725 0.98

19 23 0.0041 0.38 12.7 2.7 1 23 731 753 731 753 0.98

20 23 0.1 9.5 8.3 1.1 1 23 759 781 759 781 0.98

21 23 0.00036 0.033 16.1 0.7 1 23 787 809 787 809 0.99

22 23 0.0024 0.22 13.5 0.6 1 23 815 837 815 837 0.98

23 23 0.29 26 6.9 4.9 1 23 843 866 843 866 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.13	12	8.0	0.5	5	23	82	100	81	100	0.95
2	23	0.0017	0.15	14.0	1.3	1	23	106	128	106	128	0.97
3	23	0.021	1.9	10.5	1.6	1	23	138	160	138	160	0.96
4	23	0.00059	0.054	15.4	0.4	1	23	166	188	166	188	0.98
5	23	0.0012	0.11	14.4	2.2	1	23	194	216	194	216	0.97
6	23	0.0033	0.31	13.0	0.1	1	23	222	244	222	244	0.97
7	23	0.00061	0.057	15.3	0.8	1	23	250	272	250	272	0.98
8	23	0.0084	0.77	11.8	0.9	1	23	278	300	278	300	0.98
9	23	0.32	29	6.8	2.3	1	23	306	329	306	329	0.95
10	23	0.00016	0.015	17.2	4.3	1	23	368	390	368	390	0.99
11	23	0.015	1.4	11.0	1.3	1	23	424	446	424	446	0.98
12	23	0.0023	0.21	13.5	1.2	1	23	452	474	452	474	0.98
13	23	0.00015	0.014	17.3	1.2	1	23	480	502	480	502	0.99
14	23	0.41	38	6.4	2.4	1	23	508	530	508	530	0.98
15	23	0.00027	0.025	16.5	3.3	1	23	536	558	536	558	0.99
16	23	8.7e-06	0.0008	21.1	0.6	1	23	564	586	564	586	0.99
17	23	0.0073	0.67	11.9	3.5	3	23	679	699	677	699	0.96
18	23	3.3e-05	0.003	19.3	1.0	1	23	703	725	703	725	0.98
19	23	0.0041	0.38	12.7	2.7	1	23	731	753	731	753	0.98
20	23	0.1	9.5	8.3	1.1	1	23	759	781	759	781	0.98
21	23	0.00036	0.033	16.1	0.7	1	23	787	809	787	809	0.99
22	23	0.0024	0.22	13.5	0.6	1	23	815	837	815	837	0.98
23	23	0.29	26	6.9	4.9	1	23	843	866	843	866	0.96

Sequence Information

Coding Sequence: ATGTCTGATTCAGAAATAAAGAATGACTTAAATGAGAAGCCATTGCATTCCCTAAAAAGACATTTAATGTGGGAGTGTGACGAGACCATTGTAATGTACCCACTTCTCGGAGAAGAAATGAATTTGATTCAATACAAACTCTTGCGCAGATTGGCTGATAAGTCAATTACAGAAAGCGTGCCCGTTTTAAAGCCCAGAAGAGTATCGAAATTTTCTTCGGCCGCAAACTCgcaaacaaagaaaaactgTGATTTCAATTTCGACCGTTCCGGTACCATGAAAAAGCACGCCCTGACGCACGCCGGCGAAAAACCCTTCGCATGTCAACTGTGCGAGTACAGATCGACCGTGTCCGCGAATTTCAAGCGGCACCTGAGAAGGCACGCGATAGAAAACGAAGCCGAGAAGCCATTCGCTTGCGACCTCTGCAGTTTCAAAACGCACGACCCCTACAACCTGAAAAGACATGCGATCAGGCACGGCGGCGAGAAGCAGTTCCAATGCGACCGCTGCGGAAATAAGTTCGCCTCGCTCCCCGGATTAAAGACGCACCTGATGCGacacaccggcgaaaagccgCACGAGTGCAACATTTGCGGCTACAAGTGCAACCAGGTCGGCACGTTGAATCGACACGTCATGCTGCACACCGGCGCGAAGCCCTTTCAGTGCAACAAGTGCGATTACAGGGCCGCCATTAGGGGCAACCTCGTGAAACATATGGTCGTACATTCCGCGGAGAAACCGTTCAAGTGCGACGTCTGCGATTATAGAACGAACAGCGCCAAAAGCTTGAAAGCTCACAAGGTAACGCACACGGGCGAGAGGCCGTTTAAATGTGGCATTTGCGCCAAGAGGATGACCAGTTCGAAGAGCATGAAGAGACATCTGTTGATACATACGGGCGAGAAACCGTTTGCGTGCCGTCTCTGCGATTATAGATCCGAACAGATGGGAAATGTGAAAACACATATGAAACACAAACATAAGCAgtTTCTTGAGAAAAAAGTCACCGCTGAATTGATCGATTACGCAGATCCCTTGTTAACCGCCGGCGACAAAACGGGACGGAAGATGGCGCCAAATTCCGACGGCAAGCGTTTCAAATGTGAACTGTGCGATTTCAAGTGCACGCGCAAAATTAACCTGAAACGACACGTGCTGACGCACACCGGCGAGTACCCCTTCGGATGCGAATGCTGCCTTCACAGGTCCGCCACTTCCGCACAACTCGACGTGCACAAGTTGACACACACCGCTGCGAAGCAGTTTTCATGCGagctttgcgattataagtctGAGGTAGCTCGTTACTTTAAGAGGCACGTCAAGACGCACAGCGTCAAGAAGCCGTACCAATGCGACCGTTGCGGCAATCAGTTTAGAGTACTCAGCGTGTTGAAGTCGCACATGTTTCGCCATGACGGCGAAAAACCATACAAGTGTACCCAGTGCGATTATAGATCCACGCAAGTAGGCACGCTAAACCAGCACATGCtgacgcacaccggcgagaagcctttcCAGTGCAACCAGTGCGAGTACAGGGCGCACTTGAAGAAAAGCGTCACGATACACATGCTCACGCACACGAAGGAGAGGGCGTTCAAGTGCGACATTTGCGATCACAAAACGAAAACCTCGGCCGCCCTGAAGACGCACAAGCGGtcacacaccggcgagaaaccgtacAAGTGCAACGTCTGCGCGAAGAGGTTTAGCGTTTCCAGGGGTTTGACGAGGCACATgctaatacacaccggcgagaagccctACGCGTGCAACTTTTGTGATTACCGGTTACTTAAAAAATTCCTGACGGCtcaagaattaaaaacagaatacAAAAAGCCGTACGACTACTGCGGGCCGTTGAAATTCGAGCTCCCCGATTTTGGGCCGAACTGGTCCGCAAGGCACGTCTTGCCACATACCGGTGCAATGCCTCACGTACGTAAACGCGGTGATTGCAGACGCCTCCAACGTCTCCAGCCGGGGAAGAAAGGTCGGAAACGCGGCGTGGTCCAACTTGCGTGCGAGACGTGCGATTTTAGAACCACCAGGCCTTGCCACTTGAAGAAGCACGTGGCCACGCACGACAAGCCGTTCCAGTGCGATCGCTGCGGCATTCAGTTCGCGTCGTCCTCCACCTTGAAAACGCACATATTCCGTCATACGGGCGAGAAACCGCACAAGTGCGCCATTTGCGGCTACAAGTGCACCCAAATTGGAATATTAACGCGGCACATGATGACACACAGCGGCGATAAGCCTTTCCGTTGCAGCCAGTGCGAATACAGGGCGTGCAGCAGGGGAAACATAGACGCCCATATGGTTACGCATACGAAGGAGAAGGCCTTCAAGTGCGATATTTGCGAGTACAAGGCCAGGACTGCCGAGACCTTGAAGGTGCACAGGCGgtcgcacaccggcgagaaaccgtacCAATGCGACGTGTGCTTGCGCAGGTTCGGCATCTCCAGGGGTTTGAAGAGGCATATGTtcatacacaccggcgagaagccttaCGCGTGCAATTTTTGTGATTACAGGTCGACCCATGGGGAAAACGTGAAGACGCACATGAAACATAAGCATAAAGCGGAATACGCTCAAGAGCTTAACGTTACTAAATCTGATCCATCGCATGGATAA
Protein Sequence: MSDSEIKNDLNEKPLHSLKRHLMWECDETIVMYPLLGEEMNLIQYKLLRRLADKSITESVPVLKPRRVSKFSSAANSQTKKNCDFNFDRSGTMKKHALTHAGEKPFACQLCEYRSTVSANFKRHLRRHAIENEAEKPFACDLCSFKTHDPYNLKRHAIRHGGEKQFQCDRCGNKFASLPGLKTHLMRHTGEKPHECNICGYKCNQVGTLNRHVMLHTGAKPFQCNKCDYRAAIRGNLVKHMVVHSAEKPFKCDVCDYRTNSAKSLKAHKVTHTGERPFKCGICAKRMTSSKSMKRHLLIHTGEKPFACRLCDYRSEQMGNVKTHMKHKHKQFLEKKVTAELIDYADPLLTAGDKTGRKMAPNSDGKRFKCELCDFKCTRKINLKRHVLTHTGEYPFGCECCLHRSATSAQLDVHKLTHTAAKQFSCELCDYKSEVARYFKRHVKTHSVKKPYQCDRCGNQFRVLSVLKSHMFRHDGEKPYKCTQCDYRSTQVGTLNQHMLTHTGEKPFQCNQCEYRAHLKKSVTIHMLTHTKERAFKCDICDHKTKTSAALKTHKRSHTGEKPYKCNVCAKRFSVSRGLTRHMLIHTGEKPYACNFCDYRLLKKFLTAQELKTEYKKPYDYCGPLKFELPDFGPNWSARHVLPHTGAMPHVRKRGDCRRLQRLQPGKKGRKRGVVQLACETCDFRTTRPCHLKKHVATHDKPFQCDRCGIQFASSSTLKTHIFRHTGEKPHKCAICGYKCTQIGILTRHMMTHSGDKPFRCSQCEYRACSRGNIDAHMVTHTKEKAFKCDICEYKARTAETLKVHRRSHTGEKPYQCDVCLRRFGISRGLKRHMFIHTGEKPYACNFCDYRSTHGENVKTHMKHKHKAEYAQELNVTKSDPSHG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00467124;
90% Identity: iTF_00467124;
80% Identity: iTF_00467124;