Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284475.1:8149979-8171108[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.037 46 5.7 1.4 14 45 10 40 3 48 0.78

2 20 0.31 3.9e+02 2.7 0.0 21 48 74 101 71 105 0.87

3 20 0.02 25 6.5 0.4 21 45 102 126 98 134 0.84

4 20 0.35 4.5e+02 2.5 0.1 21 46 130 154 127 158 0.88

5 20 0.035 44 5.8 0.0 21 45 158 182 154 189 0.89

6 20 0.075 94 4.7 1.8 14 45 257 287 246 295 0.72

7 20 0.017 22 6.7 0.4 20 48 320 348 312 354 0.84

8 20 0.47 5.9e+02 2.1 0.0 21 46 377 401 375 405 0.89

9 20 0.0053 6.6 8.4 0.0 21 45 405 429 401 436 0.90

10 20 2.5 3.1e+03 -0.2 0.1 21 45 510 534 493 539 0.74

11 20 0.015 19 6.9 0.2 22 46 568 592 564 598 0.85

12 20 0.37 4.7e+02 2.5 0.2 21 52 595 626 592 626 0.88

13 20 0.23 2.9e+02 3.1 0.0 21 46 623 647 618 654 0.84

14 20 0.39 4.9e+02 2.4 0.0 21 44 699 722 696 727 0.88

15 20 0.52 6.5e+02 2.0 0.1 21 52 873 904 871 905 0.89

16 20 0.0028 3.5 9.3 1.1 6 44 886 924 882 927 0.85

17 20 0.0019 2.4 9.8 0.1 17 44 925 952 922 956 0.91

18 20 0.19 2.3e+02 3.4 0.1 18 44 954 980 953 988 0.85

19 20 1.4 1.8e+03 0.6 0.0 21 45 985 1009 981 1016 0.88

20 20 4.6 5.8e+03 -1.1 0.2 27 44 1019 1036 1010 1039 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.037	46	5.7	1.4	14	45	10	40	3	48	0.78
2	20	0.31	3.9e+02	2.7	0.0	21	48	74	101	71	105	0.87
3	20	0.02	25	6.5	0.4	21	45	102	126	98	134	0.84
4	20	0.35	4.5e+02	2.5	0.1	21	46	130	154	127	158	0.88
5	20	0.035	44	5.8	0.0	21	45	158	182	154	189	0.89
6	20	0.075	94	4.7	1.8	14	45	257	287	246	295	0.72
7	20	0.017	22	6.7	0.4	20	48	320	348	312	354	0.84
8	20	0.47	5.9e+02	2.1	0.0	21	46	377	401	375	405	0.89
9	20	0.0053	6.6	8.4	0.0	21	45	405	429	401	436	0.90
10	20	2.5	3.1e+03	-0.2	0.1	21	45	510	534	493	539	0.74
11	20	0.015	19	6.9	0.2	22	46	568	592	564	598	0.85
12	20	0.37	4.7e+02	2.5	0.2	21	52	595	626	592	626	0.88
13	20	0.23	2.9e+02	3.1	0.0	21	46	623	647	618	654	0.84
14	20	0.39	4.9e+02	2.4	0.0	21	44	699	722	696	727	0.88
15	20	0.52	6.5e+02	2.0	0.1	21	52	873	904	871	905	0.89
16	20	0.0028	3.5	9.3	1.1	6	44	886	924	882	927	0.85
17	20	0.0019	2.4	9.8	0.1	17	44	925	952	922	956	0.91
18	20	0.19	2.3e+02	3.4	0.1	18	44	954	980	953	988	0.85
19	20	1.4	1.8e+03	0.6	0.0	21	45	985	1009	981	1016	0.88
20	20	4.6	5.8e+03	-1.1	0.2	27	44	1019	1036	1010	1039	0.88

Sequence Information

Coding Sequence: ATGGGGGAGAGGAGATCCAAACCGCCCAAATCCAAATCTAGAAAACCGGGCGAAAGGGAATCCGCATGCCGCGTATGCGGTGCCAAATTCCAATCCCGCAAGCTTACGCGTCAGCACGTGCTGAAGTCACACACCAGCGGCAAGCTGTTCAGCTGTAACCGTTGCGAGCACAAATTTCGGCAACTCGTAAACCTAGAAACGCACGTGTTgacacacaccggcgagaagccgttcggttgcgACTATTGCAATTTTAGATGCCGACGGTCGGGAGCGCTGAAGCTTCACTTGTcaatacacaccgacgagaaaccatTCGCCTGTGATCTTTGCGAATATAAATGCAGACAAGCCTCGCAGTTAAGacagcacaagttaatacaTACCAATGAGAAACCACTCGCCTGTGACCTCTGCGACTATAAATGCCGACTACTCgagaatttgaaacagcacatgttgaaacacaccggtgagaagccgttcagctgtgacgtttgcgattacaaatgtcggcAGCCCGGAAGTTTAAAGAAGCATTTGctaatacacaccgacgagaaacacTACAGGTGCTACGTTTGCAGTTACGAATGCAACGAGGTGGCAGATTTGAAGGTGCACTTTTTAATGCACGACGAGAAACCGTACAAGTGCGAACGTTGCGAATTTGCGGCTGCAACGCCCGAGCTCCTAAAAGGGCATATACGAGGGCACGTCGATGAAGAATCGCACAAGCGCAAGCGACTACGAAAATCTAAACCGCCCAAATCTAAATCTAGAAAACCAGCCGATAGAGAATTCGCATGCCGCATATGCGGTGCCAAATTCCAATCCCGCAAGCTTACGCGTCAGCACGTGCTGAAGTCCCACACCAGCGGCAAGCTGTTCAGCTGTAATCGTTGCGAGCGAAAATTTCGGCAACTCGTAAACCTAGAAACGCACGTGTcgatacacaccggcgagaagccgttctgTTGCGACTATTGCAATTTTAGATGCCGACAGCCGGGAGCGCTGAAGCGCCACttgttaatacacaccggcgagaaaccgttcgccTGTGATCGCTGCGAATATAAATGCAGAGAACCCTCGAAGTTAAAACAGCACAAGTTGATACACACCAACGAGAAACCATACGCCTGCGATCTTTGCGACTACAAATGCCGACtactcggaaatttgaaagagcACTTATTGAAACACACCGGCGAGCAGCCGTTCAGTTGTGgcgtttgcgattataagtgtcgGCAGCCCGGAAGCTTAAAAAAGCATTTGCTAATACACACCGATGAGAAACACTACAGGTGCTACGTTTGCAGTTACGAATGCAACGAGGTCGCAGATTTAAAGGTGCACTTTTTAACGCACGACGAGAAGCCGTACAAGTGCGAACATTGCGAATTTGCGGCTGCAACGCCCGAGCTCCTAAAAGGGCATATACGAGTGCACGTCGATGAAAAGTCGCACAAGCGCAAGCGACTACGAAAATTCCACCCGACGACTGAACGTAAATTTCTGGACGAAAAAGGATTCGCCTGCCGCATATGCGGCTCTAAATTCAAAAAGCGTAAACTCATGCGTCAACACGTCCTGGCGTCACACACCAGCGGCAAGATGTTCAGCTGTAACCTGTGCGAACATAAAACCGTGCATCGCGGAAACTTCGAGGCgcacatgttaacgcacaccggcgaTAAACCGTTTAGTTGTGACTATTGTGATTACAAATGTCGACAGTCGTCAGCTTTGAAACGGCACGTGCttatacacaccggcgagaaaccgttcagttgtgatcactgccattataaatgccgagatcGCGGAGCTTTGACACGCCACATGTCGATACACTCcaacgagaaaccgttcagctgcgatctctgcgattataaaggCCGCGAGCGCAGAGGTTTGTCGCGGCATAAGTTAACGCATATCTTAATACCAGAGAATGGAAAAACACCCGGCGGTAAAAGTGAGCAACTTttaacgcacaccggcgagaagctcTTCAAGTGCGATCATTGTGAACACACGACCAAACTATTCGGATCGTTGAAGAGGCACCTGCTGGTGCATACCGACGAGAGGCCGTTCAAATGTAAGCTGTGCGACTACGCGGCCAGAAGATCGGAGCATTTAAAATCACATGTGCTGACGCACACCGACGATGCGCCGTTTGAATGTACGCTTTGCAGTTACAAGGGCAAAACCTTGAAGAGATTAAGATTGCACATgtGCCGGCACAAGGACGCCCTGGCGCGGCACGCGttgatacacaccggcgagacgCCGTTCAAGTGCgaactttgcgattataagGGCCGGTATCCGGGAAGGTTTAAGGAGCACGTCCTGACGCACATCGCCGAAAGACGCTACAAGTGCACTCTATGCAATTACGCGGCTAAGTTTCCGAGGATGCTCAACAAATCCAGCGAGGCTTCAACCAACGACGCCGCCGCCACCGCCGCCGTCGCCGTCGAATCGAGCTCTGAAAATCAACCGCAGGAGCCCAAGAGGCAATACAGATACTCCTGCAAGTTCTGCAATTACGCGACCAATTACTCGGGGCATTTAAAATACCACGTCTacacgcacaccggcgagaaaccctACGTCTGCCTGGTTTGCGACCGCAGATTCAACCAGCCGTACAATTTGGAGCAGCACCGGCGCACTCACACCGGCGCGAAACCGTTCCAGTGCGAGATATGCGGCGCCAGCTTTCGCCAGGCCCACCACGTGAGAGACCACATGTCGAAGCACACCAGCGAAACACCCTACGTGTGCGAGATTTGCGGGGCGAAATTCAAAAGGGCCGAGTACTTACAGCGGCACATGCCCCggcacaccggcgaaaagcccTTCGAGTGCTCCGTTTGCTCCGCGAAATTCGCGCGGAATTCCTCCCTGCAGCAGCACTTGTTGAGCCACAGCGACGAGAAGCCCTTTCAATGTATGCTCTGCGATAGGACATTCAAGACTCAGAAGACCTTGAAGTGGCACGTCGAGTCGCACACGGGGATGAAACGTTACAAGTGCGACTGGTGCATTTGTAAGTTTCGCTTGAAGTACCAACTGCGGCGCCACATGGTTGCTCACGGCGAAGGTGAAGGGCGTTTGAAGTGCTTTGACTGCGCTTTCGGACTTGACAGCGCAACATAA
Protein Sequence: MGERRSKPPKSKSRKPGERESACRVCGAKFQSRKLTRQHVLKSHTSGKLFSCNRCEHKFRQLVNLETHVLTHTGEKPFGCDYCNFRCRRSGALKLHLSIHTDEKPFACDLCEYKCRQASQLRQHKLIHTNEKPLACDLCDYKCRLLENLKQHMLKHTGEKPFSCDVCDYKCRQPGSLKKHLLIHTDEKHYRCYVCSYECNEVADLKVHFLMHDEKPYKCERCEFAAATPELLKGHIRGHVDEESHKRKRLRKSKPPKSKSRKPADREFACRICGAKFQSRKLTRQHVLKSHTSGKLFSCNRCERKFRQLVNLETHVSIHTGEKPFCCDYCNFRCRQPGALKRHLLIHTGEKPFACDRCEYKCREPSKLKQHKLIHTNEKPYACDLCDYKCRLLGNLKEHLLKHTGEQPFSCGVCDYKCRQPGSLKKHLLIHTDEKHYRCYVCSYECNEVADLKVHFLTHDEKPYKCEHCEFAAATPELLKGHIRVHVDEKSHKRKRLRKFHPTTERKFLDEKGFACRICGSKFKKRKLMRQHVLASHTSGKMFSCNLCEHKTVHRGNFEAHMLTHTGDKPFSCDYCDYKCRQSSALKRHVLIHTGEKPFSCDHCHYKCRDRGALTRHMSIHSNEKPFSCDLCDYKGRERRGLSRHKLTHILIPENGKTPGGKSEQLLTHTGEKLFKCDHCEHTTKLFGSLKRHLLVHTDERPFKCKLCDYAARRSEHLKSHVLTHTDDAPFECTLCSYKGKTLKRLRLHMCRHKDALARHALIHTGETPFKCELCDYKGRYPGRFKEHVLTHIAERRYKCTLCNYAAKFPRMLNKSSEASTNDAAATAAVAVESSSENQPQEPKRQYRYSCKFCNYATNYSGHLKYHVYTHTGEKPYVCLVCDRRFNQPYNLEQHRRTHTGAKPFQCEICGASFRQAHHVRDHMSKHTSETPYVCEICGAKFKRAEYLQRHMPRHTGEKPFECSVCSAKFARNSSLQQHLLSHSDEKPFQCMLCDRTFKTQKTLKWHVESHTGMKRYKCDWCICKFRLKYQLRRHMVAHGEGEGRLKCFDCAFGLDSAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00466591;
90% Identity: iTF_00466591;
80% Identity: iTF_00466591;