Dpar001082.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:8320271-8327847[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0053 6.7 8.4 0.1 21 44 10 33 2 41 0.86 2 18 0.0049 6.2 8.5 0.0 21 48 66 92 60 97 0.91 3 18 0.067 85 4.8 0.5 17 45 118 146 113 149 0.86 4 18 0.033 42 5.8 2.5 17 44 146 173 142 181 0.89 5 18 0.15 1.9e+02 3.7 0.0 21 46 206 231 197 234 0.82 6 18 1 1.3e+03 1.0 0.1 26 44 237 255 232 259 0.88 7 18 0.0025 3.2 9.4 0.1 21 44 365 388 335 395 0.88 8 18 0.36 4.6e+02 2.5 0.2 22 43 422 443 407 452 0.81 9 18 0.61 7.7e+02 1.8 0.2 22 45 478 501 469 507 0.85 10 18 0.085 1.1e+02 4.5 0.2 21 47 533 559 530 564 0.86 11 18 0.022 27 6.4 0.0 21 45 561 585 556 595 0.84 12 18 0.13 1.6e+02 3.9 0.0 19 44 645 671 638 681 0.80 13 18 0.12 1.5e+02 4.0 0.0 20 45 703 728 696 736 0.82 14 18 1.7 2.1e+03 0.4 0.4 21 46 732 757 729 763 0.88 15 18 2.3 2.8e+03 -0.1 0.1 20 44 759 783 756 788 0.89 16 18 0.11 1.4e+02 4.2 0.3 22 45 789 812 780 815 0.87 17 18 0.15 1.9e+02 3.7 0.1 17 48 812 843 811 848 0.84 18 18 0.64 8.1e+02 1.7 0.0 21 44 844 867 840 872 0.82
Sequence Information
- Coding Sequence
- ATGAAACAGCACATGAGGATCCATTCTAGCAGGAAACCTTTCGCCTGTCAGATTTGCAATGGTAGATTCCGGTTCGCCGGAAATTTGACGCGGCACATGTTAGTACACTCTGACAAGAAGCAGTTCGTTTGCGATCGCTGCGGTTACAGATGCCACGATGTTGGATCTTTGGTGCAGCACATGCGAATTCATACCGGCGAAagaccgttcagttgtgatctgtGCCCTCGGAAATTTcaacagtctggaaatttgaaaaagcacaagttGAGACACGACGGCGAGAAGACGATCGCTTGTGAATTTTGCGATTACAAAGGTCGAAGTTTAGAAGACGTGAAACGCCACGCGAAAAGACATAACAGCGAAAAGCCGTTCAAATGTGCCCTTTGTGATTTTAAGTGCGCGCGGCCAGCATATTTGAAACGACACCTGTCGAGGCACAGCGGCGAGAAGCGCCACAAATGTCACATTTGCAATCATGAATGCAATCAGGCGTCAAATTTGAGGTTACACTTATTGACGCACACCGACGAGAGGCCGTTTAAGTGCGAACGTTGTGAATTTGCGAGCAAGACGGCGAGATATTTAAAGTTGCACATGCGAGTGCATTCGGATGAAAGGCCGTATAAGTGCGACCTTTGCAAATACGCGACTAAGTTTCAAGGTAATCTACAGAAACATCTGACGATTCACGAGAATCTACTCAAGTGTAATATTTGTGAGTACACGTGTAAATTAGCGAGGGACTTGAAAAAGCATATGTTATCACATGCAGATACAGATTTCTGGAAGATTTTGGATACAGCTGAGAGAATACTAATAGGTCTCAAATCAGAGAATGAAGAAGGATTCGTCGTTACCTTAGGTAATGCTTTAACAATCGCTGTTTTCCAAACTGAAGGAAAatgcTCTGGggtttttaaatatacaattccGGAAGGAAGGACAACCGAATATGATTTTATATCTCCTGAGTATGTACCCAATAGCCCCATGCAAGATCCGTTGGTTTGCAAActctgcgattataagtgccgatcAACCAAACGCATGAAAGAGCGCATGAAAGAGCACATGAAGGTCCATTCCAACGAGAAGACTTTCGCCTGTGAGATTTGCAATTCAAAATTCAGGTTCTCCGGAAATTTGAGACAGCACATGTTGGTACACGCCGACGAAAAACAGTTCGTCTGCGATCGTTGCGGTTACAAATGTCGCTCGGCCGGAACTTTGAAGAAGCACGTGCAAAAGCATGTCGGCGAGAAACTGTTCAGTTGTGACCTGTGCGCTCGGAAATATCAACATTCTTCAAATCTGAAAAGGCACAGgttaacgcacaccggcgagaagcggTTCATGTGTGAATTTTGCGATTACAGATGTCTGCGTTCGGAATATCTGAAACGCCACACGCTGACACACAACGGCGAGAAACAGTTCAAGTGTTCTCTTTGTGATTATGAGTGTACGCAATCTGCgtatttgaaacggcacatgttGATGCACACCGGCGAAAAGAACTACAAGTGCCACCTTTGCAGTTATGAGTGCAATCGGGCCGGAAATTTAGGGTTACATTTATTAACGCACACTGACGAGAGACCGTTTAAGTGCGAACATTGTGCATATGTAGCCAAAACATCCAGATATTTACAAGTACACATGAGAGTACATTCAGATGAAAAGCCGTTTAAGTGTGGCCTTTGCAAATATGCTTCTAGGTTTTCTGGTAACTTACAGAAACACATGTCAACACACAAGAAGCTGCTCAAGTCTGGGATTTCGAAACCGGATGCAGGTGACTTTGATTTTAAATCGCCCGAACATGTGCCCAAATACGTACTGTTAAATAACGGCGTGAGGCTGTTCgtttgcgatctttgcgattacaaatgccaatCGGTGAGCAGCATAAAACAGCACATGAGGACCCATTCCGACGAGAAGCCTTTCGTCTGTGAGATTTGCAAGCACAAAACTCGATTCGCCGGaagtttgaagcagcacatgttaacgcacaccgacgagaagcacTTCGTCTGCGACCGTTGCGCTTACAAATGCCGCACGGCCTCGATCTTGAAGCAGCACATGcgaaaacacaccggcgagaaaccgttcggttGTAATCTGTGCgatcaaaaatttcaacggTCCGGTAGTTTGAAGAGGCACACGTTAACGCACACACACGAGAAGCCCTTCAGTTGTGAGCGTTGCCATTATAGATGCCGACGTCTGGCAGATCTGAAACACCACCTGATAATACATGACAGTGAAAAATCGATTAAATGTGGTCTCTGCGATTATAGATGCGCGCAACCTGCgtatttgaaacggcacatgatgacgcacaccggcgaaaagAACTACAAATGTCACCTTTGCAGTTACGAGTGCAATCAGTCCTGGAATTTGAGGTTGCACTTGTCGAAGCACACCGATGAGAGGCCGTTTAAGTGCGAACATTGTGAGTACGTAAGCAAGACAGCCAGACATTTAAAGTTGCACATGCGAGTGCATTCGGATGAAAAGCCGTATAAGTGCGACCTTTGCAAATACGCGACTAAGTTTCAAGGTAATCTACAGAAACATATGACCACGCACGAGAAACTGCTCAAGTGTAACGTTTGTGAATACACAAGCAAATCGGGCAAGGATTTGAAAATACACGTGTCATCACATGCACCCTGA
- Protein Sequence
- MKQHMRIHSSRKPFACQICNGRFRFAGNLTRHMLVHSDKKQFVCDRCGYRCHDVGSLVQHMRIHTGERPFSCDLCPRKFQQSGNLKKHKLRHDGEKTIACEFCDYKGRSLEDVKRHAKRHNSEKPFKCALCDFKCARPAYLKRHLSRHSGEKRHKCHICNHECNQASNLRLHLLTHTDERPFKCERCEFASKTARYLKLHMRVHSDERPYKCDLCKYATKFQGNLQKHLTIHENLLKCNICEYTCKLARDLKKHMLSHADTDFWKILDTAERILIGLKSENEEGFVVTLGNALTIAVFQTEGKCSGVFKYTIPEGRTTEYDFISPEYVPNSPMQDPLVCKLCDYKCRSTKRMKERMKEHMKVHSNEKTFACEICNSKFRFSGNLRQHMLVHADEKQFVCDRCGYKCRSAGTLKKHVQKHVGEKLFSCDLCARKYQHSSNLKRHRLTHTGEKRFMCEFCDYRCLRSEYLKRHTLTHNGEKQFKCSLCDYECTQSAYLKRHMLMHTGEKNYKCHLCSYECNRAGNLGLHLLTHTDERPFKCEHCAYVAKTSRYLQVHMRVHSDEKPFKCGLCKYASRFSGNLQKHMSTHKKLLKSGISKPDAGDFDFKSPEHVPKYVLLNNGVRLFVCDLCDYKCQSVSSIKQHMRTHSDEKPFVCEICKHKTRFAGSLKQHMLTHTDEKHFVCDRCAYKCRTASILKQHMRKHTGEKPFGCNLCDQKFQRSGSLKRHTLTHTHEKPFSCERCHYRCRRLADLKHHLIIHDSEKSIKCGLCDYRCAQPAYLKRHMMTHTGEKNYKCHLCSYECNQSWNLRLHLSKHTDERPFKCEHCEYVSKTARHLKLHMRVHSDEKPYKCDLCKYATKFQGNLQKHMTTHEKLLKCNVCEYTSKSGKDLKIHVSSHAP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466599;
- 90% Identity
- iTF_00466599;
- 80% Identity
- iTF_00466599;