Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284475.1:11434257-11442458[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.002 2.5 9.8 0.0 21 44 10 33 7 38 0.91

2 15 0.00035 0.44 12.2 0.5 22 45 39 62 34 71 0.83

3 15 0.0025 3.2 9.4 0.0 21 45 94 118 89 126 0.87

4 15 0.19 2.3e+02 3.4 0.2 21 48 122 148 119 150 0.89

5 15 0.0068 8.6 8.0 0.2 18 45 147 174 144 183 0.85

6 15 0.0026 3.2 9.4 0.0 21 45 206 230 202 237 0.87

7 15 0.22 2.7e+02 3.2 0.2 21 48 234 260 231 262 0.89

8 15 0.0064 8.1 8.1 0.0 18 45 259 286 254 292 0.86

9 15 7.7 9.7e+03 -1.8 4.8 8 51 316 359 311 360 0.75

10 15 0.087 1.1e+02 4.5 0.2 16 46 352 382 342 389 0.83

11 15 1.4 1.8e+03 0.6 0.1 22 45 386 409 382 417 0.81

12 15 0.12 1.5e+02 4.0 0.3 21 46 441 466 436 473 0.86

13 15 3.2 4e+03 -0.5 0.2 20 43 496 519 481 524 0.83

14 15 0.039 50 5.6 0.4 21 46 552 577 544 582 0.87

15 15 0.082 1e+02 4.6 0.4 23 48 581 605 576 608 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.002	2.5	9.8	0.0	21	44	10	33	7	38	0.91
2	15	0.00035	0.44	12.2	0.5	22	45	39	62	34	71	0.83
3	15	0.0025	3.2	9.4	0.0	21	45	94	118	89	126	0.87
4	15	0.19	2.3e+02	3.4	0.2	21	48	122	148	119	150	0.89
5	15	0.0068	8.6	8.0	0.2	18	45	147	174	144	183	0.85
6	15	0.0026	3.2	9.4	0.0	21	45	206	230	202	237	0.87
7	15	0.22	2.7e+02	3.2	0.2	21	48	234	260	231	262	0.89
8	15	0.0064	8.1	8.1	0.0	18	45	259	286	254	292	0.86
9	15	7.7	9.7e+03	-1.8	4.8	8	51	316	359	311	360	0.75
10	15	0.087	1.1e+02	4.5	0.2	16	46	352	382	342	389	0.83
11	15	1.4	1.8e+03	0.6	0.1	22	45	386	409	382	417	0.81
12	15	0.12	1.5e+02	4.0	0.3	21	46	441	466	436	473	0.86
13	15	3.2	4e+03	-0.5	0.2	20	43	496	519	481	524	0.83
14	15	0.039	50	5.6	0.4	21	46	552	577	544	582	0.87
15	15	0.082	1e+02	4.6	0.4	23	48	581	605	576	608	0.88

Sequence Information

Coding Sequence: ATGAAGACACACAAATTAGGACATACCAACGAGAAGCCCTTCACTTGTGAAATTTGTGATCGTAATTTCAGAGAACTTGGAACCTTGAGACGGCACGTGTTAACGCACAACAAGGAGGAGCGCTTCACTTGTGAATTTTGCGATTGTAAATACAGACAACTTAGAAActtgaaacggcacatgttaacgcacaACAAAGAGAAGCCCTTCGCTTGTAAAACTTGCGATCGTAAATCCAAACGGCTCGCCATCTTGAAACAGCACACGTTAACGCACAACACAGAGAAGCCCTTCACTTGTAAAACTTGCGAGCGTAGATTCACACAAATGAGAGACTTCAAACGCCATTTATtaacacacaccgacgagaaacctttcagttgcgatctttgcgattacaagtgtcgaCGATCCGAAAGTATGAAGGAACACAAATTAAGACATACCAACGAGAAGCCCTTCACTTGTGAAAATTGCGATTGTAAGTTTAGAGAGCTTAAAACCTTGAAACGGCACGTGTTAACGCACAACAAGGAGAAGCCCTTCGCTTGTAGAACTTGCGATCTTAAATCCAAACGGCTCGCAATCTCGAAACAGTACACGTTAACGCACAACACAGAGAATCCCTTCGCTTGTAAAATTTGCGATCGCAGATTCACAGAAATGAGAAACTTCAAACGTCATTTATTgacacacaccgacgagaaacctttcagttgcgatctttgcgattacaagtgtcgaCGATCCGAAAGCATAAAGGAACACAAACTAAGACATACCAACGAGAAGCCCTTCACTTGTAAAATTTGCGATCGTGGATTCACACGAATGGGGACATTGAAACGCCACTTGTTAAACACACACGAGAGGCGTATTACTCAGAACGACTTGGCGAAAATTTTTGGTAAGCGTTGCTTCGTTGTCTTGACCCGCTGCGCATCGCTGCCAACCAAAAGTAAACAGCCGCGACCTCGTAACTGCGCAAGCGCAAACCCGTACAGGTGCGATCTTTGCCGTTACAGGTGTAAAAAACTCAAAACGTTAGAAACTCATGCGAGAAGACACACCGAGAAACCTTTCAAATGTAACATCTGTGATTTTAGATTTACaagtatacattttttaaaaaggCACGTCAAGACGCACACCGATGAAAAACCGTTCGGGTGCGAGAAATGCGATTACAAGTGCAGATCGCGTTCTAATTTACTTCAGCACTTAACGACACACAGTGACGAGAGGCCTTTCAGATGTGAAATATGTGATTCTAGATTTACAAGTGTGTACGTCTTAAAAATACACATTAAGACGCACACCGATGAAAAGCCGTTCGTGTGCGAGAaatgcgattacaaatgccgatcgCGTTCTAATTTGCTTCGCCACTTAACGACGCACTACGAAGAGAGGCCTTTCAGATGTGACGCATGTGATTTTAGGTGTAAAACTTTGCAAGGTTTGAAATTGCACGTTACGAAGCACACCGATGAAAAACCGTTCGAGTGTAAGAAGTGCCATTGTAGGTTCAAATCGCGTCAGAGTTTGTGGCGGCACTCACTGGTACATAATGAGATGGTGTACAGATGTAGCGTAAGTGATTTTGGATTTAAAACTACGCAAACTTTAAAACGTCACATGATGACGCACACGGACGAGAAACCGCTTATGTGTGCGAAGTGCGATTACCGGTGCAGATGGCCTCATGATTTACGTCGGCACTTACAGACGCATGATGCAAACCCGTTCAGATGTAGCGTGTGTGGTTTCAGTTGTAGGACTTCAGAAACTTTAGAACGGCACGTTTTGAGACACACGGGTGGCAGAACGTACGAATGTAACAAATGCGAATACAAAACCGAAACGCGTGGCAATTATCGTGGACATCTAATGACACATCACGGCGAGAAGCTCAGGAAATGTAATATTTGTGATTACAGGAGCATGTTTCTTGGCAATTTGAAACAGCATATGCGTAGGCATGGGAATGAAAAATGA
Protein Sequence: MKTHKLGHTNEKPFTCEICDRNFRELGTLRRHVLTHNKEERFTCEFCDCKYRQLRNLKRHMLTHNKEKPFACKTCDRKSKRLAILKQHTLTHNTEKPFTCKTCERRFTQMRDFKRHLLTHTDEKPFSCDLCDYKCRRSESMKEHKLRHTNEKPFTCENCDCKFRELKTLKRHVLTHNKEKPFACRTCDLKSKRLAISKQYTLTHNTENPFACKICDRRFTEMRNFKRHLLTHTDEKPFSCDLCDYKCRRSESIKEHKLRHTNEKPFTCKICDRGFTRMGTLKRHLLNTHERRITQNDLAKIFGKRCFVVLTRCASLPTKSKQPRPRNCASANPYRCDLCRYRCKKLKTLETHARRHTEKPFKCNICDFRFTSIHFLKRHVKTHTDEKPFGCEKCDYKCRSRSNLLQHLTTHSDERPFRCEICDSRFTSVYVLKIHIKTHTDEKPFVCEKCDYKCRSRSNLLRHLTTHYEERPFRCDACDFRCKTLQGLKLHVTKHTDEKPFECKKCHCRFKSRQSLWRHSLVHNEMVYRCSVSDFGFKTTQTLKRHMMTHTDEKPLMCAKCDYRCRWPHDLRRHLQTHDANPFRCSVCGFSCRTSETLERHVLRHTGGRTYECNKCEYKTETRGNYRGHLMTHHGEKLRKCNICDYRSMFLGNLKQHMRRHGNEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00466627;
90% Identity: iTF_00466627;
80% Identity: iTF_00466627;