Dpar001020.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:7887033-7888361[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.052 65 5.2 0.1 21 44 102 125 97 130 0.90 2 10 0.0049 6.1 8.5 0.0 21 44 130 153 128 158 0.90 3 10 0.039 49 5.6 0.1 21 52 158 189 154 192 0.88 4 10 2.4 3.1e+03 -0.2 0.1 22 44 187 209 183 213 0.86 5 10 0.11 1.4e+02 4.1 0.3 22 44 243 265 226 273 0.87 6 10 0.12 1.5e+02 4.0 0.3 21 44 270 293 267 298 0.91 7 10 0.021 26 6.5 0.7 21 44 298 321 295 326 0.90 8 10 0.0022 2.8 9.6 0.1 21 46 326 351 322 357 0.86 9 10 0.041 52 5.5 0.0 21 52 354 384 351 386 0.91 10 10 0.0024 3.1 9.4 0.1 21 48 409 436 402 439 0.88
Sequence Information
- Coding Sequence
- ATGTGCGACTCGAAATTTAAATCTTACGAATGGATACGCAAGCACATACTGACGCATACCGGCGAGGTGTTACTCAGATGTgtcctttgcgattacaaatgccgaaaTCCCGACGGCTTAAGACTGCACATGTCGACGCACACCGACGAGATGTTCATACGTTATCCTTGCAGCGTCCAACTTCCCCCCAACTCGAAGGACGACATGTTAGTATACACTGTAGTGAAGCTGTCCAGCTGCGATAGCTGCGACTACAAGTGCCGAGATTCCAGCAGTATGAAGCAGCACAAGttgatacacaccggcgagaagccctTCAGCTGTGACCtgtgcgattacaagtgccgacAAAACACGACCCTAAAACATCACATGTTAGTACACACGGGAGAAaaaccgttcggttgtgataTTTGCGGATGCAAGTTCAGACAATCCGGGCATTTGAAGCTGCACATGTTGACGCACACCGgggagaagccattcagttgtgaatTTTGCGATCAGAAGTGTCGGTCCCGCGGtgatttgaaacggcacatgttGGTGCACACCCATGAGAAGCCGTTTGGTTGTGATTtctgcgattacaagtgccgagAACGCAGGCTACTGAATTACCACGTGTTAATACATGCCGGCGAGAAATCATTCGGCTGCGATTTTTGCGATTACAAGGGTCGCTCGCGCGGAGATTTGAAGCGACACGCGGTAGTACACGCCGAcaagaagccgtttagttgtgacctttgcgactACAACTGCCGAGACCGCAGGCAGTTGAAACAGCACATGctaacgcacaccggcgagaagccgctcAGCTGTGGTTTCTGTGATCACAAATGTCGAGATCCCTGCAGCATGAGGCGGCACATGCTGACGCACACTGACGAGAGACCGATCGGCTGtagtctttgcgattataagtgtcgACAACACTCGACTTTGAGGCagcacatgttaacgcacaccaacgaaaagccgttcagttgtaagCTTTGCGATTGCAAATTTAGACAGTCCGGTCATTTGAAGCATCACATGttgatacacaccggcgagaagccgttcagttgtgacctctgcgattataagtgccgtaCTAACGGAGACTTGAAAAAGCACATGTCAAGACACTCCAACAAGCCGTTTAGTTGCGATTCTTGCGATTATAGTTGTCTGGAACGCGGACAGTTGAAACAGCATATGTTACAACAcgccggcgagaaaccgttgaGTTGCggcctttgcgattataagtgccgacagATCAaacatttgaaacggcacatgcTTAACAGTCATGTCAATGACGAGAGCCAATAA
- Protein Sequence
- MCDSKFKSYEWIRKHILTHTGEVLLRCVLCDYKCRNPDGLRLHMSTHTDEMFIRYPCSVQLPPNSKDDMLVYTVVKLSSCDSCDYKCRDSSSMKQHKLIHTGEKPFSCDLCDYKCRQNTTLKHHMLVHTGEKPFGCDICGCKFRQSGHLKLHMLTHTGEKPFSCEFCDQKCRSRGDLKRHMLVHTHEKPFGCDFCDYKCRERRLLNYHVLIHAGEKSFGCDFCDYKGRSRGDLKRHAVVHADKKPFSCDLCDYNCRDRRQLKQHMLTHTGEKPLSCGFCDHKCRDPCSMRRHMLTHTDERPIGCSLCDYKCRQHSTLRQHMLTHTNEKPFSCKLCDCKFRQSGHLKHHMLIHTGEKPFSCDLCDYKCRTNGDLKKHMSRHSNKPFSCDSCDYSCLERGQLKQHMLQHAGEKPLSCGLCDYKCRQIKHLKRHMLNSHVNDESQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466727; iTF_00465361; iTF_01258453;
- 90% Identity
- iTF_00466727;
- 80% Identity
- iTF_00466727;