Dpar001027.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:7904504-7911046[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0038 4.8 8.8 0.1 22 48 7 33 3 38 0.83 2 20 0.71 8.9e+02 1.6 0.0 17 44 82 109 74 113 0.83 3 20 0.1 1.3e+02 4.3 0.1 21 47 114 139 112 145 0.86 4 20 0.0033 4.1 9.0 0.5 20 44 168 192 164 200 0.87 5 20 0.00087 1.1 10.9 0.1 23 47 199 223 195 229 0.85 6 20 5.1 6.4e+03 -1.2 0.0 22 44 226 248 223 255 0.76 7 20 0.0075 9.4 7.9 0.3 20 44 258 282 249 290 0.86 8 20 0.0029 3.6 9.2 0.2 26 47 292 313 284 320 0.84 9 20 2.3 2.9e+03 -0.1 0.0 21 46 315 340 312 346 0.83 10 20 0.47 5.9e+02 2.1 0.1 21 44 349 372 339 379 0.87 11 20 0.015 19 6.9 0.1 25 48 381 403 374 404 0.88 12 20 0.067 85 4.8 0.5 18 48 402 432 401 435 0.93 13 20 0.7 8.8e+02 1.6 0.0 17 44 469 496 461 501 0.84 14 20 0.19 2.4e+02 3.4 0.0 21 44 501 524 499 532 0.86 15 20 0.0005 0.63 11.7 0.3 22 44 558 580 553 587 0.88 16 20 0.012 15 7.3 0.3 26 47 590 611 582 618 0.83 17 20 3.6 4.5e+03 -0.7 0.0 21 46 613 638 610 643 0.84 18 20 0.71 8.9e+02 1.6 0.1 21 44 647 670 633 675 0.86 19 20 0.015 19 6.9 0.1 25 48 679 701 672 702 0.88 20 20 0.086 1.1e+02 4.5 0.4 18 48 700 730 698 731 0.94
Sequence Information
- Coding Sequence
- ATGTTAACGCATTCCGACAAGAGGCCGTTTAGTTGCAAGCTTTGCGATTCCGCATTCAGACAAGCTGGTCACTTGAAGCGGCATATGTTAATACACACCCGCGAAAAGCCGTACTGTTGTGATTCTTGCGATTACAGATATCCCGATGCATTACAAAAGGCAACGCACAGTGGAGGGAAGTTGTTCAGCTGCGATAGCTGTGATTACAAATGTTGCGATTCCACCAGTATGAAACGTCACAAGTTAAGACACACCGGAGAGAAGCCATTTAACTGTGATTTCTGCGGTTATAAATTCCGACAGAAAGGTACTTTGATGGATCATATCTTAATACACACTGGCGAGAAGCCATATAGTTGTGATCTGTGCAATTATAGCACCCGAAAGAATAGCTGTTTGAAGAAGCACTTGTTAACACACAATAACAAAAAGACGCTGAGTTGTGAATTTTGTGATTTCAAATGCCGAGATCTTACTAGTTTAATCCAACACAAGCTAACTCACTCCGATAAACCGATAAGTTgcggtctttgcgattataaatgtcgacaaCGCAGGCATCTTAAACAGCACATGCTAACACACACAGACATTAAACCGTTCAACTGCAACCTCTGCGATTCGAAATTCAGGCAGTCCGCTCATCTGAAGCGTCATTTGTTagtacacaccggcgagaagccgttcagttgtagtTTATGCACGTTCCAGTGTGGAGTTAAGCAAGGGTTGGACAGACACATGAAAACCCATGTTGATAAAACATACCGAAATACTGAAAAATCTGTTAGTTGCAGTCTATGCGATTTTAAGTGCAGAACATCGAGTAATTTAAGACAGCACATGTTAACCCATTCCGACAAGAGGCGGTACAGTTGCAAGCTGTGCGACTCCGCGTTCAGACAATCCCATCATCTGAAGCGTCATATGTTAGtacacaccggtgagaagccattcagttgtagTTTATGTACGCACAAGAGTGGATCTAAGGGAGATTTGAAAAAACACATGGAAACCCACATTGATAAAAAATACCGATATACTGAAAAGTCGATTAGTTGCAGTCTATGCGATTTTAAGTGCGTAGCATCGGGTAATTTAAGACAGCACATGTTAACCCATTCCGACGTTAAAGCGTTCACCTGTAACCTCTGCGATTCCAAATTCAGGCAATCCGGCCATTTGAAGTCACATATGTTGAGACATAACAGCGAGAAGCCCTACAGTTGTGATTCTTGCGATTACAGGAGCCGAACTAGGGGAGATCTGAACAAGCACGTCAACCGACGTCATTCATATCCCGATGCATTACAAAAGGCAACGCACAGTGGAGGGAAGTTGTTCAGCTGCGATAGCTGTGATTACAAATGTTGCGATTCCACCAGTATAAAACGTCACAAGTTAAGACACACCGGAGAGAAGCCATTTAACTGTGATTTCTGCGGTTATAAATTCCGACAGAAAGGTACTTTGATGGATCATATCTTaatacataccggcgagaagccataTAGTTGTGATCTGTGCAATTATAGCACCCGAAAGAATAGCTCTTTGAAGAAGCACGTGTTAACACACAATAACAAAAAGACGCTGAGTTGTGAATTTTGTGATTTCAAATGCCGAGATCTTACTAGTTTAATCCAACACAAGCTATCTCACCACGTCGACAAACCGATAAGTTGCAGTGTATGCGATTTTAAGTGCAGAACATCGAGAAATTTAAGACTGCACATGTTAACCCATTCCGACAAGAGGCGGTACAGTTGCAAGCAGTGCGACTCCGCGTTCAGACAATCCCATCATCTGAAGCGTCATATGTTagtacacaccggcgagaagccattcagttgtatTTTATGTACGCACAAGAGTGCATCTAAGGGAGATTTGAAAAAACACATGGAAACCCACATTGATAAAAAATACCGATATACTGAAAAATCGATTAGTTGCAGACTATGCGATTTTAAGTGCGTAGCATCGGGTAATTTAAGACAGCACATGTTAACCCATTCCGACGTTAAAGCGTTCACCTGTAACCTCTGCGATTCCAAATTCAGGCAGTCCGGTCATTTGAAGTCACATATGTTGAGACATAACAGCGAGAAGCCCTACAGTTGTGATTCTTGCGATTACAGGAGCCGAACTAGGGGAGATCTGAACAAGCACGTCAAACGACGTCATTCGTAA
- Protein Sequence
- MLTHSDKRPFSCKLCDSAFRQAGHLKRHMLIHTREKPYCCDSCDYRYPDALQKATHSGGKLFSCDSCDYKCCDSTSMKRHKLRHTGEKPFNCDFCGYKFRQKGTLMDHILIHTGEKPYSCDLCNYSTRKNSCLKKHLLTHNNKKTLSCEFCDFKCRDLTSLIQHKLTHSDKPISCGLCDYKCRQRRHLKQHMLTHTDIKPFNCNLCDSKFRQSAHLKRHLLVHTGEKPFSCSLCTFQCGVKQGLDRHMKTHVDKTYRNTEKSVSCSLCDFKCRTSSNLRQHMLTHSDKRRYSCKLCDSAFRQSHHLKRHMLVHTGEKPFSCSLCTHKSGSKGDLKKHMETHIDKKYRYTEKSISCSLCDFKCVASGNLRQHMLTHSDVKAFTCNLCDSKFRQSGHLKSHMLRHNSEKPYSCDSCDYRSRTRGDLNKHVNRRHSYPDALQKATHSGGKLFSCDSCDYKCCDSTSIKRHKLRHTGEKPFNCDFCGYKFRQKGTLMDHILIHTGEKPYSCDLCNYSTRKNSSLKKHVLTHNNKKTLSCEFCDFKCRDLTSLIQHKLSHHVDKPISCSVCDFKCRTSRNLRLHMLTHSDKRRYSCKQCDSAFRQSHHLKRHMLVHTGEKPFSCILCTHKSASKGDLKKHMETHIDKKYRYTEKSISCRLCDFKCVASGNLRQHMLTHSDVKAFTCNLCDSKFRQSGHLKSHMLRHNSEKPYSCDSCDYRSRTRGDLNKHVKRRHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466609;
- 90% Identity
- iTF_00466609;
- 80% Identity
- iTF_00466609;