Dpar001027.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:7904504-7911046[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 6.3e-06 0.00058 21.6 1.4 1 23 10 32 10 32 0.98 2 24 0.3 27 6.9 7.6 1 23 62 84 62 84 0.97 3 24 2.1e-05 0.0019 19.9 0.7 1 23 90 112 90 112 0.97 4 24 0.00063 0.058 15.3 4.8 1 23 118 140 118 140 0.98 5 24 0.038 3.5 9.7 2.8 2 23 147 168 146 168 0.96 6 24 0.001 0.095 14.6 5.4 2 23 174 195 173 195 0.97 7 24 5.6e-05 0.0052 18.6 2.7 1 23 201 223 201 223 0.97 8 24 0.15 13 7.8 2.8 1 23 229 251 229 251 0.98 9 24 6.7e-05 0.0062 18.3 3.5 2 23 264 285 263 285 0.97 10 24 2.1e-05 0.0019 20.0 4.8 1 23 291 313 291 313 0.98 11 24 0.0033 0.3 13.0 2.6 1 23 319 341 319 341 0.98 12 24 0.0023 0.21 13.5 1.1 2 23 354 375 353 375 0.97 13 24 3.5e-05 0.0033 19.2 3.8 1 23 381 403 381 403 0.98 14 24 0.00097 0.089 14.7 1.3 1 23 409 432 409 432 0.97 15 24 0.64 59 5.8 7.0 1 23 449 471 449 471 0.97 16 24 2.1e-05 0.0019 19.9 0.7 1 23 477 499 477 499 0.97 17 24 6.7e-05 0.0061 18.4 2.0 1 23 505 527 505 527 0.98 18 24 0.21 20 7.3 4.6 2 23 534 555 533 556 0.94 19 24 0.00028 0.026 16.4 3.2 2 23 562 583 561 583 0.97 20 24 2.1e-05 0.0019 20.0 5.2 1 23 589 611 589 611 0.98 21 24 0.051 4.7 9.3 1.9 1 23 617 639 617 639 0.92 22 24 0.0065 0.6 12.1 1.4 2 23 652 673 651 673 0.96 23 24 3.5e-05 0.0033 19.2 3.8 1 23 679 701 679 701 0.98 24 24 0.0009 0.083 14.8 1.6 1 23 707 730 707 730 0.97
Sequence Information
- Coding Sequence
- ATGTTAACGCATTCCGACAAGAGGCCGTTTAGTTGCAAGCTTTGCGATTCCGCATTCAGACAAGCTGGTCACTTGAAGCGGCATATGTTAATACACACCCGCGAAAAGCCGTACTGTTGTGATTCTTGCGATTACAGATATCCCGATGCATTACAAAAGGCAACGCACAGTGGAGGGAAGTTGTTCAGCTGCGATAGCTGTGATTACAAATGTTGCGATTCCACCAGTATGAAACGTCACAAGTTAAGACACACCGGAGAGAAGCCATTTAACTGTGATTTCTGCGGTTATAAATTCCGACAGAAAGGTACTTTGATGGATCATATCTTAATACACACTGGCGAGAAGCCATATAGTTGTGATCTGTGCAATTATAGCACCCGAAAGAATAGCTGTTTGAAGAAGCACTTGTTAACACACAATAACAAAAAGACGCTGAGTTGTGAATTTTGTGATTTCAAATGCCGAGATCTTACTAGTTTAATCCAACACAAGCTAACTCACTCCGATAAACCGATAAGTTgcggtctttgcgattataaatgtcgacaaCGCAGGCATCTTAAACAGCACATGCTAACACACACAGACATTAAACCGTTCAACTGCAACCTCTGCGATTCGAAATTCAGGCAGTCCGCTCATCTGAAGCGTCATTTGTTagtacacaccggcgagaagccgttcagttgtagtTTATGCACGTTCCAGTGTGGAGTTAAGCAAGGGTTGGACAGACACATGAAAACCCATGTTGATAAAACATACCGAAATACTGAAAAATCTGTTAGTTGCAGTCTATGCGATTTTAAGTGCAGAACATCGAGTAATTTAAGACAGCACATGTTAACCCATTCCGACAAGAGGCGGTACAGTTGCAAGCTGTGCGACTCCGCGTTCAGACAATCCCATCATCTGAAGCGTCATATGTTAGtacacaccggtgagaagccattcagttgtagTTTATGTACGCACAAGAGTGGATCTAAGGGAGATTTGAAAAAACACATGGAAACCCACATTGATAAAAAATACCGATATACTGAAAAGTCGATTAGTTGCAGTCTATGCGATTTTAAGTGCGTAGCATCGGGTAATTTAAGACAGCACATGTTAACCCATTCCGACGTTAAAGCGTTCACCTGTAACCTCTGCGATTCCAAATTCAGGCAATCCGGCCATTTGAAGTCACATATGTTGAGACATAACAGCGAGAAGCCCTACAGTTGTGATTCTTGCGATTACAGGAGCCGAACTAGGGGAGATCTGAACAAGCACGTCAACCGACGTCATTCATATCCCGATGCATTACAAAAGGCAACGCACAGTGGAGGGAAGTTGTTCAGCTGCGATAGCTGTGATTACAAATGTTGCGATTCCACCAGTATAAAACGTCACAAGTTAAGACACACCGGAGAGAAGCCATTTAACTGTGATTTCTGCGGTTATAAATTCCGACAGAAAGGTACTTTGATGGATCATATCTTaatacataccggcgagaagccataTAGTTGTGATCTGTGCAATTATAGCACCCGAAAGAATAGCTCTTTGAAGAAGCACGTGTTAACACACAATAACAAAAAGACGCTGAGTTGTGAATTTTGTGATTTCAAATGCCGAGATCTTACTAGTTTAATCCAACACAAGCTATCTCACCACGTCGACAAACCGATAAGTTGCAGTGTATGCGATTTTAAGTGCAGAACATCGAGAAATTTAAGACTGCACATGTTAACCCATTCCGACAAGAGGCGGTACAGTTGCAAGCAGTGCGACTCCGCGTTCAGACAATCCCATCATCTGAAGCGTCATATGTTagtacacaccggcgagaagccattcagttgtatTTTATGTACGCACAAGAGTGCATCTAAGGGAGATTTGAAAAAACACATGGAAACCCACATTGATAAAAAATACCGATATACTGAAAAATCGATTAGTTGCAGACTATGCGATTTTAAGTGCGTAGCATCGGGTAATTTAAGACAGCACATGTTAACCCATTCCGACGTTAAAGCGTTCACCTGTAACCTCTGCGATTCCAAATTCAGGCAGTCCGGTCATTTGAAGTCACATATGTTGAGACATAACAGCGAGAAGCCCTACAGTTGTGATTCTTGCGATTACAGGAGCCGAACTAGGGGAGATCTGAACAAGCACGTCAAACGACGTCATTCGTAA
- Protein Sequence
- MLTHSDKRPFSCKLCDSAFRQAGHLKRHMLIHTREKPYCCDSCDYRYPDALQKATHSGGKLFSCDSCDYKCCDSTSMKRHKLRHTGEKPFNCDFCGYKFRQKGTLMDHILIHTGEKPYSCDLCNYSTRKNSCLKKHLLTHNNKKTLSCEFCDFKCRDLTSLIQHKLTHSDKPISCGLCDYKCRQRRHLKQHMLTHTDIKPFNCNLCDSKFRQSAHLKRHLLVHTGEKPFSCSLCTFQCGVKQGLDRHMKTHVDKTYRNTEKSVSCSLCDFKCRTSSNLRQHMLTHSDKRRYSCKLCDSAFRQSHHLKRHMLVHTGEKPFSCSLCTHKSGSKGDLKKHMETHIDKKYRYTEKSISCSLCDFKCVASGNLRQHMLTHSDVKAFTCNLCDSKFRQSGHLKSHMLRHNSEKPYSCDSCDYRSRTRGDLNKHVNRRHSYPDALQKATHSGGKLFSCDSCDYKCCDSTSIKRHKLRHTGEKPFNCDFCGYKFRQKGTLMDHILIHTGEKPYSCDLCNYSTRKNSSLKKHVLTHNNKKTLSCEFCDFKCRDLTSLIQHKLSHHVDKPISCSVCDFKCRTSRNLRLHMLTHSDKRRYSCKQCDSAFRQSHHLKRHMLVHTGEKPFSCILCTHKSASKGDLKKHMETHIDKKYRYTEKSISCRLCDFKCVASGNLRQHMLTHSDVKAFTCNLCDSKFRQSGHLKSHMLRHNSEKPYSCDSCDYRSRTRGDLNKHVKRRHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00467096;
- 90% Identity
- iTF_00467096;
- 80% Identity
- iTF_00467096;