Dpar008848.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_958336345.1
- Location
- OY284476.1:23114693-23124363[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.85 4.3e+04 -5.1 5.2 28 43 67 82 40 168 0.41 2 4 0.11 5.5e+03 -2.2 1.0 24 78 133 188 112 206 0.50 3 4 1.4e-106 7.1e-102 342.2 33.5 1 300 236 531 236 531 0.94 4 4 0.00052 26 5.4 3.5 120 173 529 582 529 585 0.94
Sequence Information
- Coding Sequence
- ATGGAACGGACGGACAGTGTTGTTTCTTTGGAGGATATTTTGAACGATTTGAATTCGGACAGCGATGAAAGCTTCACGGACAAATCCATTACAACAAATATTCGTGATGAAGTGACTAATCGAAAAGTAAACGCAAGTGATGCGCGTGCGGATGACTATAATACAAGCCAGTTAGAACGAAAGGAGAATGATAAACGTAAAGAATCCGAAACAAATGAACTTAAAGAAGTGCCGCAAGTTAACAGTGACGATGGAGGACACCAAGTTGAAACAAAGAATGACTCAAGAATTGATGATAAGATCACTccgaaaatagaagaaaaacgAGGCAGTGCCgaagaagaaaatatattattaaataaggcTGAAACTCAAACAGTAGATATTGATCAAATTAAAGTCGAAGAGGAAGAGTTTATTGAGAAAGGAGACCAAATAGAACTGAACAATAATGTACTTGATATTAATAAAAACCAGACCAAATCTGTGGTTATAGAAGGCGTCACTGAAAGTGAAAGCAACGACAATGAAATACGCAGTAGCTCTGCGGAAAATGAAGTTAAATTACGTCTGGAAGGAGTTACTGAAGGTGATACTGACGACTTTGAAGAAACGATGCCGGTTAAAGTTAGTAGAAGTCATAGTATACGTTCACACAATGAAGAGGACATCATCAACCAGTTCCTTGATGTATCTAATGATGACGCTGAAGCACGACTGTTGGCGAGGCGGCAGGCCAGGGCCGAAGCTAGGGAGATTCGCATGCGAGAATTGGAACGTCAACAAAAAGAGCAGGAGGAAAATGCGGATAGACAATTTGATATGCTGGCAGAGCCGGTGGCGAGGGCTGCACGATCTGCCGGATCTAGGTATCTTTCGAGCAGAAGAAGTTCGGAGGATTCTCTAGAAGATGGGGGCAGTCTTATGGGTTTACGGCACGAGCTCAAAGAGGTAGAAGAGAAGTTCAAGAAGGCCATGATAGCAAACGCTCAATTAGATAACGATAAGGCTGCGCAGACATATCAATTGGAACTACTTAAAGATAGATTAGAAGAACTAGAAGAAGAACACTCTCAACTGAAAAGAGAACACCGTGATAAATGTAGGGAACACGAGCAATTAACTAGGTTATCTGCCAGGCTCAAAGATGAATTGGCTGTGGCTAAAGCAGAACTGGAGGAAAGAGATAGGCTTATTGAGGAGAAGGGCTTGGTCATAGTGGGCGAGTCCATGTCCCCAGATGAAGATCAGGGGCCATCAGACGGAGCTGTGAATGGACTTAGTACGCCGAGGAAAGCGCTAGTTAGTGTACAAAATGCACAGTTGTTAGAAAATGCTGGGGAAGGTAGTTTAGatgTACGGCTGGAAcgttttgcaaaagaaaaagtTGAATTGCAAGATCAAATAAGTCACTTAAAATTAGAATTGGAAGAAGAAAGAAGCAAGAGGCGGAAGTCGAATGCATCAGGAATTACATTGAATGGACCTACTTCAGATTCTGATTATGATGCTGCTGATTTGCAAAGAGAAGTTAGCAAGCAACTGGCAGAATATAAATTTAGGGCACAAAAAGCAGAGCAAGATGTTGCTACGCTTCAAGCAACTGTAGCAAGGCTGGAAAGCCAGGTGATAAGATATAAGTCTGCTGCTGAAGTGTCAGAGAAATCAGAAGAGGCTCTGAAAGCAGAGAAGAGAAAGTTACAAAGAGAGGTGAATAATCTGAAGCAGCAGCTGCTGCATAGCGAGGCCTATAAGGCAGCGTTATCTGAGCAGTGCAAGCGTTTGCAACGTCGTCAGTCCCTTGGCCTTCTATAA
- Protein Sequence
- MERTDSVVSLEDILNDLNSDSDESFTDKSITTNIRDEVTNRKVNASDARADDYNTSQLERKENDKRKESETNELKEVPQVNSDDGGHQVETKNDSRIDDKITPKIEEKRGSAEEENILLNKAETQTVDIDQIKVEEEEFIEKGDQIELNNNVLDINKNQTKSVVIEGVTESESNDNEIRSSSAENEVKLRLEGVTEGDTDDFEETMPVKVSRSHSIRSHNEEDIINQFLDVSNDDAEARLLARRQARAEAREIRMRELERQQKEQEENADRQFDMLAEPVARAARSAGSRYLSSRRSSEDSLEDGGSLMGLRHELKEVEEKFKKAMIANAQLDNDKAAQTYQLELLKDRLEELEEEHSQLKREHRDKCREHEQLTRLSARLKDELAVAKAELEERDRLIEEKGLVIVGESMSPDEDQGPSDGAVNGLSTPRKALVSVQNAQLLENAGEGSLDVRLERFAKEKVELQDQISHLKLELEEERSKRRKSNASGITLNGPTSDSDYDAADLQREVSKQLAEYKFRAQKAEQDVATLQATVARLESQVIRYKSAAEVSEKSEEALKAEKRKLQREVNNLKQQLLHSEAYKAALSEQCKRLQRRQSLGLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00464859;
- 90% Identity
- iTF_00464859;
- 80% Identity
- -