Dhop028109.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_033060865.1
- Location
- CM065424.1:39652502-39663097[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1 5.3e+04 -6.3 6.5 140 153 61 74 39 154 0.55 2 3 1.8e-106 9.3e-102 341.9 33.3 1 300 229 524 229 524 0.93 3 3 0.00052 27 5.4 3.5 120 173 522 575 522 578 0.94
Sequence Information
- Coding Sequence
- ATGGAACGGACGGACAGTGTTGTTTCTTTGGAGGATATTTTGAACGATTTGAATTCGGACAGCGACGAAAGCTTCACGGACAAATCCATTACAACAAATATTCGTGATGAAGTGACTAATCGAAAAGTAAACGCGAGTGATGCGCGTGCGGATGACCATAATACAAGCCAGTTAGAACGAAAGGAGAATAACAAACGTAAAGAATCCGAAACAAATGAACGTAAAGAAGTGCCGCAAGTTAACAGTGACGATGGAGGACACgaagttgaaacaaaaaatGACTCAAGAATTGATGATACGGTCACTCCCgaaatagaagaagaaaatatattattaaataaggcTGAAACTCAAACAGAAGATATTGATCAAATTAAAGTAGAAGAGGAAAAGTTTATCGAAAAAGGAGACCAAATAGAACTGAACAACAATGTACttgatattaataaaaacaagaccAAATCTGTGGTTATAGAAGGCGTCACTGAAAGTGAAAGCAACGACAATGAAATAAGCAGTAGCTCCGCGGAAAATGAAGTTAAATTACGTCTGGAAGGAGTTACTGAAGGTGATACTGACGACTTTGAAGAAACGATGCCGGTTAAAGTTAGTAGAAGTCATAGTATACGTTCACACAATGAAGAGGACATCATCAACCAGTTCCTTGATGTATCTAATGATGACGCTGAAGCACGACTGTTGGCGAGGCGGCAGGCCAGGGCCGAAGCTAGGGAGATTCGCATGCGAGAATTGGAACGTCAACAAAAAGAGCAGGAGGAAAATGCGGATAGACAATTTGATATGCTGGCAGAGCCGGTGGCGAGGGCTGCACGATCTGCCGGATCCAGGTATCTTTCGAGCAGAAGAAGTTCGGAGGATTCTCTAGAAGATGGGGGCAGCCTTATGGGTTTACGGCACGAGCTCAAAGAGGTAGAGGAGAAGTTCAAGAAGGCCATGATAGCAAACGCTCAATTAGATAACGATAAGGCTGCGCAGACATATCAATTGGAACTACTTAAAGATAGATTAGAAGAACTAGAAGAAGAACACTCTCAACTGAAAAGAGAACACCGTGATAAATGTAGGGAACACGAGCAATTAACTAGGTTATCTGCCAGGCTCAAAGATGAATTGGCTGTGGCTAAAGCAGAACTGGAAGAAAGAGATAGGCTTATTGAGGAGAAGGGCTTGGTCATAGTGGGCGAATCCTTGTCCCCAGATGAAGATCAAGGGCCATCAGACGGAGCTGTGAATGGACTTAGTACGCCGAGGAAAGCGCTAGTTAGTGTACAAAATGCACAATTGTTAGAAAATGCTGGGGAAGGTAGTTTAGatGTACGGCTGGAACgttttgcaaaagaaaaagTTGAATTGCAAGATCAAATAAGTCACTTAAAATTAGAATTGGAAGAAGAAAGAAGCAAGAGGCGGAAGTCGAATGCGTCAGGAATTACATTGAATGGACCTACTTCAGATTCTGATTATGATGCTGCTGATTTGCAAAGAGAAGTTAGCAAGCAACTGGCAGAATATAAATTTAGGGCACAAAAAGCAGAGCAAGACGTTGCTACGCTTCAAGCAACTGTAGCGAGGCTGGAAAGCCAGGTGATAAGATATAAGTCTGCTGCTGAAGTGTCAGAAAAATCAGAAGAGGCTCTGAAAGCAGAGAAGAGAAAGTTACAAAGAGAGGTGAATAATCTGAAGCAGCAGCTGCTGCATAGCGAGGCCTATAAGGCAGCGTTATCTGAGCAGTGCAAGCGTTTGCAACGTCGTCAGTCCCTTGGTCTTCTATAA
- Protein Sequence
- MERTDSVVSLEDILNDLNSDSDESFTDKSITTNIRDEVTNRKVNASDARADDHNTSQLERKENNKRKESETNERKEVPQVNSDDGGHEVETKNDSRIDDTVTPEIEEENILLNKAETQTEDIDQIKVEEEKFIEKGDQIELNNNVLDINKNKTKSVVIEGVTESESNDNEISSSSAENEVKLRLEGVTEGDTDDFEETMPVKVSRSHSIRSHNEEDIINQFLDVSNDDAEARLLARRQARAEAREIRMRELERQQKEQEENADRQFDMLAEPVARAARSAGSRYLSSRRSSEDSLEDGGSLMGLRHELKEVEEKFKKAMIANAQLDNDKAAQTYQLELLKDRLEELEEEHSQLKREHRDKCREHEQLTRLSARLKDELAVAKAELEERDRLIEEKGLVIVGESLSPDEDQGPSDGAVNGLSTPRKALVSVQNAQLLENAGEGSLDVRLERFAKEKVELQDQISHLKLELEEERSKRRKSNASGITLNGPTSDSDYDAADLQREVSKQLAEYKFRAQKAEQDVATLQATVARLESQVIRYKSAAEVSEKSEEALKAEKRKLQREVNNLKQQLLHSEAYKAALSEQCKRLQRRQSLGLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466198;
- 90% Identity
- iTF_00466198;
- 80% Identity
- -