Dhop036375.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- -
- Assembly
- GCA_033060865.1
- Location
- CM065425.1:72096552-72097934[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.05 69 5.2 0.1 21 52 6 37 3 39 0.87 2 12 0.02 28 6.4 0.2 21 48 62 88 59 91 0.88 3 12 5.4 7.4e+03 -1.3 0.0 21 43 91 113 85 124 0.80 4 12 0.18 2.5e+02 3.4 0.2 15 46 141 172 127 178 0.77 5 12 0.095 1.3e+02 4.3 0.1 21 48 175 201 172 204 0.88 6 12 5 7e+03 -1.2 0.1 22 47 205 229 198 233 0.80 7 12 0.092 1.3e+02 4.3 0.0 19 45 231 257 226 260 0.89 8 12 0.00063 0.88 11.3 0.1 21 48 261 288 257 292 0.85 9 12 0.039 54 5.5 0.1 21 48 289 315 285 319 0.89 10 12 0.67 9.3e+02 1.6 0.2 17 46 315 343 313 350 0.78 11 12 0.032 45 5.8 0.0 22 47 348 373 344 380 0.84 12 12 0.023 32 6.2 0.1 20 46 402 428 393 434 0.87
Sequence Information
- Coding Sequence
- ATGCTgacgcacaccgacgagaaaccgttcaagTGCGCCATCTGCGGTTACGAATGCAAAACGTCCACTCGTTTGAAACATCACATGTCAATACACGACGACGAGAAGCCGGTCGCCTGCGACCGTTGCGATTTCAAATGCAAAACGGCGGGAAAACTGAAGTCGCACATGTTAATACACGCCGACGAGAAACCGATCAGTTGTGACCtatgcgattacaaatgccgacggTCTTCGCTgttgaagcggcacaagttgAAACACACCGATGCCGAAAAGTCGTTGAGCTGTGACGtctgcgattacaagtgccgacATCACGTAGACCTGAAAAACCACAAGCTAACACATACCGACGAGAAGCGGTTCAGTTGTACCCTCTGCGCATTTAAATGCCGACACGCCAGTACTTTAAAACACCACGTGTCGACACACagcgacgagaagccgttcggttgtaatctctgcgattacaaatgtaaAGTGGAACGAACGTTGAAGTCGCACATGttgatacacaccggcgagaagccgctcagttgtgatctttgcgattacaagtgtcgaCAGTTCATAACGATGAAGCGCCACAAGTTGAAGCACACGGACCCCGAAAAGTCGTTGAGTTGCGAcgtttgcgattacaagtgccgtTATTACATAGACATGAGGAAGCACAAGTTGAAGCACACCGACAGCGAGAAACGCTTCAGTTGTACcatttgcgattataaaggcCGACTGGCCGGAAACTTGAAACAGCACATGTCGGTACACTCTGAAGAGAGGCCTTTCGCATGTGCAGTTTGCGATTCCAAATTCCGACAATTGTACAAGCTAAAGAGACACATGTCtatacataccggcgagaagccgtacagttgcgacctttgcgattataagtgtcgAGATGCCTCGTTTTTGAAGCGGCACAGTTTAAGACATAACAGCGGCGGCGAGAAGCGCTTCAGTTGCGAGCTCTGCGATTACAAAACTCAGGTGGCCGCACGTTTGCGACGGCATATGTTAACGCACACCGACAAGAAACCCTTCACTTGCGGTGTTTGCGACCATAAGTCTCGAACGCGCGACGATTTGAAACGTCACGTGTTGGTGCACACCGACAagaagccgttcagctgtgacctttgcgattacaagggCCGAACGAACTCAAGTTTGATCAAGCACAAGCAgacgcacaccgacgagaaaccgttcgttTGTAGCGTTTGCGATCACCGATTTCGACACCTCGCAAAGTTGAAACGGCACATGTCGGTACACAATCGGGAGAAGTTTAAATGCGATCGCTGCTTTTACGAGAGCAGAACTTTAGGACATTTGAAAATGCATATGAAAGTACATAACGCTAAAACTTGA
- Protein Sequence
- MLTHTDEKPFKCAICGYECKTSTRLKHHMSIHDDEKPVACDRCDFKCKTAGKLKSHMLIHADEKPISCDLCDYKCRRSSLLKRHKLKHTDAEKSLSCDVCDYKCRHHVDLKNHKLTHTDEKRFSCTLCAFKCRHASTLKHHVSTHSDEKPFGCNLCDYKCKVERTLKSHMLIHTGEKPLSCDLCDYKCRQFITMKRHKLKHTDPEKSLSCDVCDYKCRYYIDMRKHKLKHTDSEKRFSCTICDYKGRLAGNLKQHMSVHSEERPFACAVCDSKFRQLYKLKRHMSIHTGEKPYSCDLCDYKCRDASFLKRHSLRHNSGGEKRFSCELCDYKTQVAARLRRHMLTHTDKKPFTCGVCDHKSRTRDDLKRHVLVHTDKKPFSCDLCDYKGRTNSSLIKHKQTHTDEKPFVCSVCDHRFRHLAKLKRHMSVHNREKFKCDRCFYESRTLGHLKMHMKVHNAKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466762; iTF_00465269;
- 90% Identity
- iTF_00466762; iTF_00465269;
- 80% Identity
- iTF_00465269;