Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065425.1:72272411-72279223[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0012 1.7 10.3 0.0 18 44 3 29 1 34 0.90

2 18 0.22 3.1e+02 3.1 0.1 21 43 34 56 31 64 0.89

3 18 1.9 2.6e+03 0.1 0.0 26 48 67 88 59 95 0.80

4 18 0.21 2.9e+02 3.2 0.1 21 44 90 113 85 116 0.85

5 18 0.062 86 4.9 0.5 20 48 116 143 114 150 0.87

6 18 0.019 26 6.5 0.2 20 47 172 199 168 204 0.86

7 18 0.99 1.4e+03 1.0 0.0 21 44 201 224 199 228 0.89

8 18 0.64 8.9e+02 1.6 0.1 26 44 240 258 232 262 0.89

9 18 0.0026 3.7 9.3 0.0 21 44 263 286 260 294 0.86

10 18 0.39 5.4e+02 2.3 0.1 21 43 291 313 286 319 0.76

11 18 0.0014 1.9 10.2 0.2 21 47 319 344 316 349 0.89

12 18 0.59 8.2e+02 1.7 0.0 22 44 349 371 345 375 0.90

13 18 0.1 1.4e+02 4.2 0.2 21 44 376 399 372 404 0.90

14 18 4.8 6.7e+03 -1.2 0.1 22 43 445 466 440 472 0.62

15 18 1.6 2.2e+03 0.4 0.1 18 45 469 496 463 504 0.84

16 18 2.5 3.5e+03 -0.3 0.1 20 47 499 525 484 531 0.75

17 18 0.93 1.3e+03 1.1 0.8 20 43 527 550 521 559 0.88

18 18 0.049 68 5.2 0.1 21 48 567 594 560 598 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0012	1.7	10.3	0.0	18	44	3	29	1	34	0.90
2	18	0.22	3.1e+02	3.1	0.1	21	43	34	56	31	64	0.89
3	18	1.9	2.6e+03	0.1	0.0	26	48	67	88	59	95	0.80
4	18	0.21	2.9e+02	3.2	0.1	21	44	90	113	85	116	0.85
5	18	0.062	86	4.9	0.5	20	48	116	143	114	150	0.87
6	18	0.019	26	6.5	0.2	20	47	172	199	168	204	0.86
7	18	0.99	1.4e+03	1.0	0.0	21	44	201	224	199	228	0.89
8	18	0.64	8.9e+02	1.6	0.1	26	44	240	258	232	262	0.89
9	18	0.0026	3.7	9.3	0.0	21	44	263	286	260	294	0.86
10	18	0.39	5.4e+02	2.3	0.1	21	43	291	313	286	319	0.76
11	18	0.0014	1.9	10.2	0.2	21	47	319	344	316	349	0.89
12	18	0.59	8.2e+02	1.7	0.0	22	44	349	371	345	375	0.90
13	18	0.1	1.4e+02	4.2	0.2	21	44	376	399	372	404	0.90
14	18	4.8	6.7e+03	-1.2	0.1	22	43	445	466	440	472	0.62
15	18	1.6	2.2e+03	0.4	0.1	18	45	469	496	463	504	0.84
16	18	2.5	3.5e+03	-0.3	0.1	20	47	499	525	484	531	0.75
17	18	0.93	1.3e+03	1.1	0.8	20	43	527	550	521	559	0.88
18	18	0.049	68	5.2	0.1	21	48	567	594	560	598	0.88

Sequence Information

Coding Sequence: ATGGTACGACACAACGTAGAAAAGCCGTTCACCTGTGAAATTTGCGAGTTTAAATTCAAGATGCTCCGCAGTTTGAAACGCCACATGTTAACACACACCGGCGAGAGGCCGTTCAGttgcgacctttgcgattatagggCTCGCGACATCTCGAATGTGAAACGACACAAGCTGACGCACTCTGACGAGATGCAATTTCGttgcgacctttgcgattacGGATGCCGTCGAAgcgagaattttaaaatgcacaagttaaaacacgcCGACGAGAAGCCATTGGTCTGTGACTTTTGCGGTTTCAAATGCCTGCGTTATCAAAACTTGAGGCAGCACTTGGTAACGCACAGCGAAAAGTCGTTGAGCTGTGACGTTTGCGACTACAAGTGTCGACGTTCCCACACTATGAGGCagcacaaattaaaacataccgacgagaagccCTTCGGTTGTAATCTTTGCGAATACAAATGCTTTCTAGCAGcacatttgaaacagcacatgttAACACACAACAGCGAAAAGTCGTTCGCTTGCGAGATTTGCGGACATAAATCCAGGCAACGCGCACACTTGAACCgtcacatgttaatacacaccggcgagaaaccgttgaGTTGTGAGCTTTGCGACTTCAAATGCCGACTAACTACAGATTTAAAACAGCACATGTtaacacacaccgacgagaTTCAATGCCAGCGACGGATTTTGGACAAATGTCCCCTTTGTAATTACAAATATCGAAACGTTGAGAAACTGAAGCAGCACTTGGTAACACAcgccgacgagaagccgttcggttgtgacctttgcgacgACAAGTTCCGACAGAAGAGAGATATGAAAAGGCACAGGttgatacacaccggcgagaagccgttcacaTGTAAATTTTGCGACTACAAGTGCGTGCGGAACACGAACATGAAGGCTCACGAattaatacacaccggcgaaaagccgTTCGCTTGTGGAATTTGCAGCTACAAGTGCCGACACTCCACGAGCTTGAAGCGGCACATGCTGAAACACACGGGCGGCAAGAAACCGCTCAGTTGTGATTtctgcgattacaagtgccgaTTCTCCGCGGACATGAAACGACACGTCTAcacgcacaccggcgagaaaccgatcggttgtgatctttgcagtTATAAATGTCGACAACCCACAAGTTTGAAGCACCACATGCGCAAACATACCGACGAGTGCGAACGGACCTCTAAATCTGATCTCGCGACGAAAAAGAAGTTCAAATGCCGCATATGCGATTCCAAATATACAACTCGCGCGTATCTAAGGACACACGTGCTgatacataccggcgagaagccgttcaacTGTGACGTTTGCGATTACAAAGCCCTACTGCGCGGACATCTGAAGCAGCACATGTTAAGGCACAGCAACGAGCAACTGCTCAGGTGTACTCTTTGCAATTTCAAGTGCAGGGCAGCCAAAAAATTGGAAGCGCACGTGTCAAAGCACGGCAGTGCGAAGTGGTTCAGTTGCAATCTCTGCGAATACAAATCCCAATTTACCGTAGATTTAAGGCGACACATGTTGAAGCACaacgacgagaaaccgttcaaaTGTGACCTTTGCAGTTACAGCTGTCGAAGTGCGGGGAGATTGAGGGAGCACAGGTGTCGAAAAAATGCGGAACTGAAGGTGCATAGGTTAATATGCACCGGCgaaaaaccgtttaattgtGGCCTTTGCGATTACGAGTGCCGGCAACCTTCAGATTTGAAGCAACACATGTTAACACGCAAGTTGAGTTGTGATATTTGCAGGTACAAGTGCCAAGATGCCCTGGATATGAAGCAGCACAAATTAAAGCCTTCTCGTTGGTGA
Protein Sequence: MVRHNVEKPFTCEICEFKFKMLRSLKRHMLTHTGERPFSCDLCDYRARDISNVKRHKLTHSDEMQFRCDLCDYGCRRSENFKMHKLKHADEKPLVCDFCGFKCLRYQNLRQHLVTHSEKSLSCDVCDYKCRRSHTMRQHKLKHTDEKPFGCNLCEYKCFLAAHLKQHMLTHNSEKSFACEICGHKSRQRAHLNRHMLIHTGEKPLSCELCDFKCRLTTDLKQHMLTHTDEIQCQRRILDKCPLCNYKYRNVEKLKQHLVTHADEKPFGCDLCDDKFRQKRDMKRHRLIHTGEKPFTCKFCDYKCVRNTNMKAHELIHTGEKPFACGICSYKCRHSTSLKRHMLKHTGGKKPLSCDFCDYKCRFSADMKRHVYTHTGEKPIGCDLCSYKCRQPTSLKHHMRKHTDECERTSKSDLATKKKFKCRICDSKYTTRAYLRTHVLIHTGEKPFNCDVCDYKALLRGHLKQHMLRHSNEQLLRCTLCNFKCRAAKKLEAHVSKHGSAKWFSCNLCEYKSQFTVDLRRHMLKHNDEKPFKCDLCSYSCRSAGRLREHRCRKNAELKVHRLICTGEKPFNCGLCDYECRQPSDLKQHMLTRKLSCDICRYKCQDALDMKQHKLKPSRW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00465285;
90% Identity: iTF_00465285;
80% Identity: iTF_00465285;