Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065425.1:72272411-72279223[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 3e-05 0.0033 19.3 2.2 1 23 10 32 10 32 0.99

2 21 0.0034 0.37 12.8 0.7 1 23 38 60 38 60 0.98

3 21 0.003 0.33 13.0 4.5 1 23 66 88 66 88 0.98

4 21 0.22 24 7.1 2.3 2 23 95 116 94 116 0.95

5 21 0.082 9.1 8.5 6.5 2 23 122 143 121 143 0.96

6 21 0.062 6.9 8.8 3.5 3 23 151 171 149 171 0.97

7 21 2.9e-05 0.0032 19.3 2.3 1 23 177 199 177 199 0.97

8 21 0.015 1.6 10.8 2.8 2 23 206 227 205 227 0.97

9 21 0.0006 0.066 15.2 0.7 2 23 240 261 239 261 0.97

10 21 0.0091 1 11.5 1.3 3 23 269 289 267 289 0.97

11 21 0.0032 0.35 12.9 3.4 1 23 295 317 295 317 0.97

12 21 0.00089 0.099 14.6 5.7 1 23 323 345 323 345 0.97

13 21 0.027 3 10.0 3.1 2 23 353 374 352 374 0.96

14 21 0.0055 0.61 12.1 6.6 3 23 382 402 382 402 0.99

15 21 0.00043 0.048 15.6 1.2 1 23 420 442 420 442 0.98

16 21 0.22 24 7.1 1.4 1 23 448 470 448 470 0.93

17 21 0.23 25 7.1 2.3 2 23 477 498 476 498 0.96

18 21 0.024 2.6 10.1 1.8 1 23 504 526 504 526 0.98

19 21 0.073 8.1 8.6 3.1 1 21 532 552 532 553 0.95

20 21 0.00018 0.02 16.8 0.7 1 22 571 592 571 592 0.95

21 21 6.8 7.6e+02 2.4 1.1 2 20 596 614 595 616 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	3e-05	0.0033	19.3	2.2	1	23	10	32	10	32	0.99
2	21	0.0034	0.37	12.8	0.7	1	23	38	60	38	60	0.98
3	21	0.003	0.33	13.0	4.5	1	23	66	88	66	88	0.98
4	21	0.22	24	7.1	2.3	2	23	95	116	94	116	0.95
5	21	0.082	9.1	8.5	6.5	2	23	122	143	121	143	0.96
6	21	0.062	6.9	8.8	3.5	3	23	151	171	149	171	0.97
7	21	2.9e-05	0.0032	19.3	2.3	1	23	177	199	177	199	0.97
8	21	0.015	1.6	10.8	2.8	2	23	206	227	205	227	0.97
9	21	0.0006	0.066	15.2	0.7	2	23	240	261	239	261	0.97
10	21	0.0091	1	11.5	1.3	3	23	269	289	267	289	0.97
11	21	0.0032	0.35	12.9	3.4	1	23	295	317	295	317	0.97
12	21	0.00089	0.099	14.6	5.7	1	23	323	345	323	345	0.97
13	21	0.027	3	10.0	3.1	2	23	353	374	352	374	0.96
14	21	0.0055	0.61	12.1	6.6	3	23	382	402	382	402	0.99
15	21	0.00043	0.048	15.6	1.2	1	23	420	442	420	442	0.98
16	21	0.22	24	7.1	1.4	1	23	448	470	448	470	0.93
17	21	0.23	25	7.1	2.3	2	23	477	498	476	498	0.96
18	21	0.024	2.6	10.1	1.8	1	23	504	526	504	526	0.98
19	21	0.073	8.1	8.6	3.1	1	21	532	552	532	553	0.95
20	21	0.00018	0.02	16.8	0.7	1	22	571	592	571	592	0.95
21	21	6.8	7.6e+02	2.4	1.1	2	20	596	614	595	616	0.89

Sequence Information

Coding Sequence: ATGGTACGACACAACGTAGAAAAGCCGTTCACCTGTGAAATTTGCGAGTTTAAATTCAAGATGCTCCGCAGTTTGAAACGCCACATGTTAACACACACCGGCGAGAGGCCGTTCAGttgcgacctttgcgattatagggCTCGCGACATCTCGAATGTGAAACGACACAAGCTGACGCACTCTGACGAGATGCAATTTCGttgcgacctttgcgattacGGATGCCGTCGAAgcgagaattttaaaatgcacaagttaaaacacgcCGACGAGAAGCCATTGGTCTGTGACTTTTGCGGTTTCAAATGCCTGCGTTATCAAAACTTGAGGCAGCACTTGGTAACGCACAGCGAAAAGTCGTTGAGCTGTGACGTTTGCGACTACAAGTGTCGACGTTCCCACACTATGAGGCagcacaaattaaaacataccgacgagaagccCTTCGGTTGTAATCTTTGCGAATACAAATGCTTTCTAGCAGcacatttgaaacagcacatgttAACACACAACAGCGAAAAGTCGTTCGCTTGCGAGATTTGCGGACATAAATCCAGGCAACGCGCACACTTGAACCgtcacatgttaatacacaccggcgagaaaccgttgaGTTGTGAGCTTTGCGACTTCAAATGCCGACTAACTACAGATTTAAAACAGCACATGTtaacacacaccgacgagaTTCAATGCCAGCGACGGATTTTGGACAAATGTCCCCTTTGTAATTACAAATATCGAAACGTTGAGAAACTGAAGCAGCACTTGGTAACACAcgccgacgagaagccgttcggttgtgacctttgcgacgACAAGTTCCGACAGAAGAGAGATATGAAAAGGCACAGGttgatacacaccggcgagaagccgttcacaTGTAAATTTTGCGACTACAAGTGCGTGCGGAACACGAACATGAAGGCTCACGAattaatacacaccggcgaaaagccgTTCGCTTGTGGAATTTGCAGCTACAAGTGCCGACACTCCACGAGCTTGAAGCGGCACATGCTGAAACACACGGGCGGCAAGAAACCGCTCAGTTGTGATTtctgcgattacaagtgccgaTTCTCCGCGGACATGAAACGACACGTCTAcacgcacaccggcgagaaaccgatcggttgtgatctttgcagtTATAAATGTCGACAACCCACAAGTTTGAAGCACCACATGCGCAAACATACCGACGAGTGCGAACGGACCTCTAAATCTGATCTCGCGACGAAAAAGAAGTTCAAATGCCGCATATGCGATTCCAAATATACAACTCGCGCGTATCTAAGGACACACGTGCTgatacataccggcgagaagccgttcaacTGTGACGTTTGCGATTACAAAGCCCTACTGCGCGGACATCTGAAGCAGCACATGTTAAGGCACAGCAACGAGCAACTGCTCAGGTGTACTCTTTGCAATTTCAAGTGCAGGGCAGCCAAAAAATTGGAAGCGCACGTGTCAAAGCACGGCAGTGCGAAGTGGTTCAGTTGCAATCTCTGCGAATACAAATCCCAATTTACCGTAGATTTAAGGCGACACATGTTGAAGCACaacgacgagaaaccgttcaaaTGTGACCTTTGCAGTTACAGCTGTCGAAGTGCGGGGAGATTGAGGGAGCACAGGTGTCGAAAAAATGCGGAACTGAAGGTGCATAGGTTAATATGCACCGGCgaaaaaccgtttaattgtGGCCTTTGCGATTACGAGTGCCGGCAACCTTCAGATTTGAAGCAACACATGTTAACACGCAAGTTGAGTTGTGATATTTGCAGGTACAAGTGCCAAGATGCCCTGGATATGAAGCAGCACAAATTAAAGCCTTCTCGTTGGTGA
Protein Sequence: MVRHNVEKPFTCEICEFKFKMLRSLKRHMLTHTGERPFSCDLCDYRARDISNVKRHKLTHSDEMQFRCDLCDYGCRRSENFKMHKLKHADEKPLVCDFCGFKCLRYQNLRQHLVTHSEKSLSCDVCDYKCRRSHTMRQHKLKHTDEKPFGCNLCEYKCFLAAHLKQHMLTHNSEKSFACEICGHKSRQRAHLNRHMLIHTGEKPLSCELCDFKCRLTTDLKQHMLTHTDEIQCQRRILDKCPLCNYKYRNVEKLKQHLVTHADEKPFGCDLCDDKFRQKRDMKRHRLIHTGEKPFTCKFCDYKCVRNTNMKAHELIHTGEKPFACGICSYKCRHSTSLKRHMLKHTGGKKPLSCDFCDYKCRFSADMKRHVYTHTGEKPIGCDLCSYKCRQPTSLKHHMRKHTDECERTSKSDLATKKKFKCRICDSKYTTRAYLRTHVLIHTGEKPFNCDVCDYKALLRGHLKQHMLRHSNEQLLRCTLCNFKCRAAKKLEAHVSKHGSAKWFSCNLCEYKSQFTVDLRRHMLKHNDEKPFKCDLCSYSCRSAGRLREHRCRKNAELKVHRLICTGEKPFNCGLCDYECRQPSDLKQHMLTRKLSCDICRYKCQDALDMKQHKLKPSRW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00465637;
90% Identity: iTF_00465637;
80% Identity: iTF_00465637;