Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065425.1:75712626-75727725[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 4.8 6.6e+03 -1.2 0.0 25 48 117 139 100 141 0.81

2 16 0.0054 7.5 8.3 0.1 18 52 138 172 125 173 0.91

3 16 0.083 1.2e+02 4.5 0.3 12 44 224 256 217 261 0.90

4 16 0.0076 11 7.8 0.2 18 52 286 320 282 321 0.93

5 16 1.2 1.7e+03 0.7 0.1 13 43 337 367 328 376 0.80

6 16 2.6 3.6e+03 -0.3 0.1 21 47 373 399 368 406 0.84

7 16 0.15 2.1e+02 3.6 0.2 21 45 458 482 447 488 0.85

8 16 0.17 2.4e+02 3.5 0.1 20 44 489 513 483 518 0.88

9 16 0.0018 2.5 9.8 0.0 10 52 535 577 530 578 0.89

10 16 0.012 16 7.2 0.0 21 48 630 657 622 663 0.86

11 16 1.9 2.7e+03 0.1 0.0 21 48 658 685 656 687 0.90

12 16 0.011 16 7.2 0.1 16 47 910 942 898 948 0.80

13 16 0.44 6.1e+02 2.2 0.3 21 48 944 971 941 974 0.91

14 16 0.47 6.5e+02 2.1 0.0 18 45 1104 1131 1097 1139 0.84

15 16 0.0053 7.4 8.3 0.1 14 48 1183 1218 1175 1224 0.79

16 16 2.4 3.3e+03 -0.2 0.0 21 50 1219 1248 1216 1250 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	4.8	6.6e+03	-1.2	0.0	25	48	117	139	100	141	0.81
2	16	0.0054	7.5	8.3	0.1	18	52	138	172	125	173	0.91
3	16	0.083	1.2e+02	4.5	0.3	12	44	224	256	217	261	0.90
4	16	0.0076	11	7.8	0.2	18	52	286	320	282	321	0.93
5	16	1.2	1.7e+03	0.7	0.1	13	43	337	367	328	376	0.80
6	16	2.6	3.6e+03	-0.3	0.1	21	47	373	399	368	406	0.84
7	16	0.15	2.1e+02	3.6	0.2	21	45	458	482	447	488	0.85
8	16	0.17	2.4e+02	3.5	0.1	20	44	489	513	483	518	0.88
9	16	0.0018	2.5	9.8	0.0	10	52	535	577	530	578	0.89
10	16	0.012	16	7.2	0.0	21	48	630	657	622	663	0.86
11	16	1.9	2.7e+03	0.1	0.0	21	48	658	685	656	687	0.90
12	16	0.011	16	7.2	0.1	16	47	910	942	898	948	0.80
13	16	0.44	6.1e+02	2.2	0.3	21	48	944	971	941	974	0.91
14	16	0.47	6.5e+02	2.1	0.0	18	45	1104	1131	1097	1139	0.84
15	16	0.0053	7.4	8.3	0.1	14	48	1183	1218	1175	1224	0.79
16	16	2.4	3.3e+03	-0.2	0.0	21	50	1219	1248	1216	1250	0.88

Sequence Information

Coding Sequence: ATGTTAAGGCACACGAAGAAAACGTTCCTCAGCACCCCCGCGTTCCCCCAAAATACAGATTTGTTAGCAACGCACCCTCTCAACGAGCTGTGCGATTCCGATTCGAGATATTCCGACATCGCCAAGCAACACGTGTTGACGCACACCGACGAAAAAATATACGCGTGTAAATCGTGCGAGTACAGATGCGCCGACTTCGCAAATTTGAAGAGGCACGTGAAAAACCACGTGACGAAGGACGAACTGAGCCGCATCGAAGAACAGTTCGTTTGCGAACTCTGCAGTTTCGAAACCGCGAAAGCCGAATACCTGAAGAAGCACATGAAGAGGCACGTCGGGCGCAAGCGGTTTGCCTGCGACATCTGCGGCGATAAATTCTCGCAAGGCACCACTTTGAAGACGCACATGTTGCgacataccggcgagaaaccgcACGAGTGCAACATCTGCGGGTACAAATGCAATCAGATCGGTACGCTGAATCGACACGTCATGCTGCACAGTGGCGCGAAGCCTTTTCACTGTAACAAATGCGATTACAGGGCCACCCTGAAAGATCCGTTCTTTTCGCCCATCACGAAAACATCGAACGCTATAAATCACGCCCAGACGCACACCGACGAAAAACCACTCGCTCGTGCAAATTTCAAACGCCGCTTGGCGAAGCGTACGGAATCAAATAAAAAACGCAACCGCATTGAAAAATGGCACTCATGTGAGCTGTGCGATTATAAAACCAGGCAGGCTCATCACCTGAAGAATCACATGACCACGCACAGCGGCCAGAAGCTGTTCCAATGCGACCGCTGCGGTGTTAAGTTCACGGCGCTCACCAGTTTGAAAACGCACATGCTGCGGCACACCGGGGAGAAACCGTACAAGTGCCACATTTGCGAGTACAGGTGCAATCAAGTCGGCACGCTGAACCGACATATTTTGCTGCACACCGGCGCTAAGCCTTTCCAGTGCAACACGTGCGATTATAGGGCGGCCACGAAGGGCAACATCAACAAGCACATGGTTCGGCATTCTGCGGAGAGGCCTTTCGAGTGCAACCTCTGCGATTACAAGTCGAGCACCACCAATTCTTTAAAGAGGCACAAGATGACGCACAcgggcgagaaaccgttcgagtGTGTTCTCTGCACCAAGAGGTTTACTTGCACCAAACACATGAAGAGGCACATGCTGATACATACGGGGGAGAAACCGTTCGGTTGCGGCCTTTGCGATTATAGGTCAATTACAGAAAGCGTGCCCGTTTTGGAGCCCAACTCGCGAACGAAGAAAAAGCCCCCTCTTAAATTTGAACACTGCGATTTCAAGTCCGACCGTTCCGGTACCATGACGAAGCACGCCCCGacgcacaccggcgaaaagccCTTCGCGTGTAAACTGTGCGAGTACAGATCGTCTCTGTCCGCGAATTTCAAGCGACACCTGAGAAGGCACGCGATAGAAAACGAAGCCGAAAAGCCATTCGCTTGCGACGTCTGCAGCTTTAAAACGCACGACCCCTACAACCTGAAAAGACACGCGTTCAGACACGGCGGCGAGAAGCAGTTTCAATGCGACCGCTGCGGCAATAAGTTCGCCTCGCTCCCCGGTTTAAAGACGCATTTGATGCGacacaccggcgaaaagccgCACGAGTGCAACATTTGCGGCTACAAGTGCAACCAGGTCGGCACGTTGAATCGACACGTCATGCTGCACACCGGCGCGAAGCCTTTTCAGTGCAACGAGTGCGATTACAAGGCCGCCATTAGGGGTAATCTCATAAAACATATGGTCGTACATTCCGCGGAGAAACCGTTCAAGTGTGACGTCTGCGATTATAGAACGAACAGCGCCAAAAGCTTGAAAGCTCACAAGATAACGCACACGGGCGAGAGGCCGTTTAAATGTGGCATCTGCGACAAGAGGTTGACCAGTTCCAAGAGCATGAAAAGACATCTGTTGATACATACGGGTGAAAAGCCGTTTGCGTGCCGTTTCTGCGATTATAGATCCGAACAGATGGGAAATGTGAAAACACATATGAAACACAAACATAAGCAGTTTCTTGAGAAAAAGGTCACCGCCGAATTGATCGATTACGCAGATCCCTTATTAACCGCCAACAACAAAACGGGACGAAAGATGGCGCCAAATTCCGACAGCAAACGTTTCAAATGCGAACTGTGCGATTTCAAGTGCACGCGCAAAATTAACTTGAAGCGGCACGTGCTGACACATACCGGCGAGTACCCCTTCGGATGCGAATACTGCCTCCACAGATCCGCCACTTCCGCCCAACTCGAGACGCACATGTCGACACACACCGCTGCGAAGCAGTTTTCATGCGAGCTTTGTGATTATAAGTCTGAGGTAGCTCGTTACTTTAAGAGGCACGTCAAGACGCACAGCGTCAAAAAGCCGTATCAGTGCGACCGTTGCGGCAATCAGTTTAGAGTACTCAGTGTGTTGAAGTCGCACATGTTTCGCCACGACGGCGAAAAACCATATAAGTGTAACCAGTGCGATTATAGATCCACGCAAGTAGGCACATTAAACCAGCACATGCTGACGCACACCAGCGAGAAACCTTTCCAGTGCAACCAATGCGAGTACAGGGCGCACTTGAAGAAAAGCGTCACGATACACATGCTCACGCACACGAAGGAGAGGGCGTTCAAGTGCGACATTTGCGATCACAAAACGAAAACCTCGGCCGCTCTGAAGACGCACAAGCGGTCgcataccggcgagaaaccaTACAAGTGCAACGTGTGCGCGAAGAGGTTTAGTGTTTCTAGGGGTTTGACGAGGCACATGCttatacacaccggcgagaagccctACGCGTGCAAGTTTTGTGACTACCGGTCTACACACGGGGAAAATGTGAGGACGCATATTAAGCACAGACACAAGGAGCACTGCGTTAACGTCACCAAgttaCTTAAAAAATTTCTGACGGCTCAAGAATTAAAAACGGAATACAAAAGACCATACGACTACGGCGGGCCGTTGAAATTCGAACTCCACGATTTTGAGCCGAACTGGTCCGCAAGGCACGTCTTCCCACATACCGGAGCAATGCCTCACGTACGTAGACGCGGTGATTGCAGACGCCAACGTCTCCTCCAGCCGGGGAAGAAAGGTCGGAAACGCGGCGTGGTCCAACTTGCGTGCGAGACGTGCGATTTTAGAACTACCAGGCCTTGCCACCTGAAGAAGCACGTGGCCACGCACGATAAGCCGTTCCAGTGCGATCGCTGCGGCATTCAGTTTGCGTCGTCCTCCACCTTGAAGACGCACATATTCCgtcacaccggcgagaaaccgcaCAAGTGTCACATTTGCGGCTACAAGTGCACCCAAATTGGAATATTAACGCGGCACATGATGACACATAGCGGCGATAAGCCTTTCCGTTGCAGCCAGTGCGAATACAGGGCGTGCAGCAGAGGAAACATAGACGCCCACATGGTCACGCATACGAAGGAGAAGGCCTTCAAGTGCGATATTTGCGAGTACAAAGCCAGGACTGCTGAGACCTTGAAGGTGCACAGGCGGtcgcacaccggcgagaaaccgtacCAGTGCGACGTTTGCTTGCGGAGGTTCGGCATCTCCAGGGGTTTGAAGCGGCACATGTTCATACATACGGGCGAGAAGCCTTACGCGTGCAATTTTTGTGATTACAGGTCGACCCATGGGGAAAACGTGAAGACGCACATGAAACATAAGCATAAAGCGGAATACGCTCAAGAGTTTAACGTTACTAAATCTGATCCATCACATGgataa
Protein Sequence: MLRHTKKTFLSTPAFPQNTDLLATHPLNELCDSDSRYSDIAKQHVLTHTDEKIYACKSCEYRCADFANLKRHVKNHVTKDELSRIEEQFVCELCSFETAKAEYLKKHMKRHVGRKRFACDICGDKFSQGTTLKTHMLRHTGEKPHECNICGYKCNQIGTLNRHVMLHSGAKPFHCNKCDYRATLKDPFFSPITKTSNAINHAQTHTDEKPLARANFKRRLAKRTESNKKRNRIEKWHSCELCDYKTRQAHHLKNHMTTHSGQKLFQCDRCGVKFTALTSLKTHMLRHTGEKPYKCHICEYRCNQVGTLNRHILLHTGAKPFQCNTCDYRAATKGNINKHMVRHSAERPFECNLCDYKSSTTNSLKRHKMTHTGEKPFECVLCTKRFTCTKHMKRHMLIHTGEKPFGCGLCDYRSITESVPVLEPNSRTKKKPPLKFEHCDFKSDRSGTMTKHAPTHTGEKPFACKLCEYRSSLSANFKRHLRRHAIENEAEKPFACDVCSFKTHDPYNLKRHAFRHGGEKQFQCDRCGNKFASLPGLKTHLMRHTGEKPHECNICGYKCNQVGTLNRHVMLHTGAKPFQCNECDYKAAIRGNLIKHMVVHSAEKPFKCDVCDYRTNSAKSLKAHKITHTGERPFKCGICDKRLTSSKSMKRHLLIHTGEKPFACRFCDYRSEQMGNVKTHMKHKHKQFLEKKVTAELIDYADPLLTANNKTGRKMAPNSDSKRFKCELCDFKCTRKINLKRHVLTHTGEYPFGCEYCLHRSATSAQLETHMSTHTAAKQFSCELCDYKSEVARYFKRHVKTHSVKKPYQCDRCGNQFRVLSVLKSHMFRHDGEKPYKCNQCDYRSTQVGTLNQHMLTHTSEKPFQCNQCEYRAHLKKSVTIHMLTHTKERAFKCDICDHKTKTSAALKTHKRSHTGEKPYKCNVCAKRFSVSRGLTRHMLIHTGEKPYACKFCDYRSTHGENVRTHIKHRHKEHCVNVTKLLKKFLTAQELKTEYKRPYDYGGPLKFELHDFEPNWSARHVFPHTGAMPHVRRRGDCRRQRLLQPGKKGRKRGVVQLACETCDFRTTRPCHLKKHVATHDKPFQCDRCGIQFASSSTLKTHIFRHTGEKPHKCHICGYKCTQIGILTRHMMTHSGDKPFRCSQCEYRACSRGNIDAHMVTHTKEKAFKCDICEYKARTAETLKVHRRSHTGEKPYQCDVCLRRFGISRGLKRHMFIHTGEKPYACNFCDYRSTHGENVKTHMKHKHKAEYAQEFNVTKSDPSHG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00465170;
90% Identity: iTF_00465170;
80% Identity: iTF_00465170;