Dhop036650.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus hopei
Gene Symbol
-
Assembly
GCA_033060865.1
Location
CM065425.1:75712626-75727725[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 34 0.011 1.2 11.3 2.3 1 23 54 76 54 76 0.97
2 34 0.0026 0.29 13.2 0.8 1 23 89 111 89 111 0.98
3 34 0.00093 0.1 14.6 0.4 1 23 117 139 117 139 0.97
4 34 0.0017 0.19 13.7 2.2 1 23 145 167 145 167 0.97
5 34 0.0038 0.43 12.6 7.3 1 23 237 259 237 259 0.97
6 34 0.00022 0.025 16.5 0.9 1 23 265 287 265 287 0.98
7 34 0.0016 0.18 13.8 3.5 1 23 293 315 293 315 0.98
8 34 0.0014 0.15 14.0 0.6 1 23 321 343 321 343 0.98
9 34 0.001 0.12 14.4 2.6 1 23 349 371 349 371 0.98
10 34 0.28 30 6.8 6.7 1 23 377 399 377 399 0.98
11 34 0.0031 0.34 12.9 1.8 1 23 462 484 462 484 0.97
12 34 0.049 5.4 9.2 2.2 1 23 494 516 494 516 0.95
13 34 0.00076 0.085 14.8 0.4 1 23 522 544 522 544 0.98
14 34 0.0016 0.18 13.8 2.2 1 23 550 572 550 572 0.97
15 34 0.0025 0.27 13.2 0.1 1 23 578 600 578 600 0.97
16 34 0.00033 0.037 16.0 0.8 1 23 606 628 606 628 0.98
17 34 8.3e-05 0.0092 17.9 1.1 1 23 634 656 634 656 0.98
18 34 0.81 90 5.3 3.0 1 23 662 685 662 685 0.95
19 34 0.00021 0.023 16.6 4.3 1 23 724 746 724 746 0.99
20 34 0.024 2.6 10.1 1.0 3 23 754 774 752 774 0.98
21 34 0.019 2.2 10.4 1.3 1 23 780 802 780 802 0.98
22 34 0.003 0.33 13.0 1.2 1 23 808 830 808 830 0.98
23 34 0.00014 0.016 17.1 1.1 1 23 836 858 836 858 0.99
24 34 0.54 60 5.9 2.4 1 23 864 886 864 886 0.98
25 34 0.00035 0.039 15.9 3.3 1 23 892 914 892 914 0.99
26 34 1.1e-05 0.0013 20.6 0.6 1 23 920 942 920 942 0.99
27 34 0.76 84 5.4 4.6 1 23 948 971 948 971 0.96
28 34 0.0095 1 11.4 3.5 3 23 1059 1079 1057 1079 0.96
29 34 4.3e-05 0.0047 18.8 1.0 1 23 1083 1105 1083 1105 0.98
30 34 0.0066 0.73 11.9 5.8 1 23 1111 1133 1111 1133 0.98
31 34 0.13 15 7.8 1.1 1 23 1139 1161 1139 1161 0.98
32 34 0.00047 0.052 15.5 0.7 1 23 1167 1189 1167 1189 0.99
33 34 0.0031 0.35 12.9 0.6 1 23 1195 1217 1195 1217 0.98
34 34 0.37 41 6.4 4.9 1 23 1223 1246 1223 1246 0.96

Sequence Information

Coding Sequence
ATGTTAAGGCACACGAAGAAAACGTTCCTCAGCACCCCCGCGTTCCCCCAAAATACAGATTTGTTAGCAACGCACCCTCTCAACGAGCTGTGCGATTCCGATTCGAGATATTCCGACATCGCCAAGCAACACGTGTTGACGCACACCGACGAAAAAATATACGCGTGTAAATCGTGCGAGTACAGATGCGCCGACTTCGCAAATTTGAAGAGGCACGTGAAAAACCACGTGACGAAGGACGAACTGAGCCGCATCGAAGAACAGTTCGTTTGCGAACTCTGCAGTTTCGAAACCGCGAAAGCCGAATACCTGAAGAAGCACATGAAGAGGCACGTCGGGCGCAAGCGGTTTGCCTGCGACATCTGCGGCGATAAATTCTCGCAAGGCACCACTTTGAAGACGCACATGTTGCgacataccggcgagaaaccgcACGAGTGCAACATCTGCGGGTACAAATGCAATCAGATCGGTACGCTGAATCGACACGTCATGCTGCACAGTGGCGCGAAGCCTTTTCACTGTAACAAATGCGATTACAGGGCCACCCTGAAAGATCCGTTCTTTTCGCCCATCACGAAAACATCGAACGCTATAAATCACGCCCAGACGCACACCGACGAAAAACCACTCGCTCGTGCAAATTTCAAACGCCGCTTGGCGAAGCGTACGGAATCAAATAAAAAACGCAACCGCATTGAAAAATGGCACTCATGTGAGCTGTGCGATTATAAAACCAGGCAGGCTCATCACCTGAAGAATCACATGACCACGCACAGCGGCCAGAAGCTGTTCCAATGCGACCGCTGCGGTGTTAAGTTCACGGCGCTCACCAGTTTGAAAACGCACATGCTGCGGCACACCGGGGAGAAACCGTACAAGTGCCACATTTGCGAGTACAGGTGCAATCAAGTCGGCACGCTGAACCGACATATTTTGCTGCACACCGGCGCTAAGCCTTTCCAGTGCAACACGTGCGATTATAGGGCGGCCACGAAGGGCAACATCAACAAGCACATGGTTCGGCATTCTGCGGAGAGGCCTTTCGAGTGCAACCTCTGCGATTACAAGTCGAGCACCACCAATTCTTTAAAGAGGCACAAGATGACGCACAcgggcgagaaaccgttcgagtGTGTTCTCTGCACCAAGAGGTTTACTTGCACCAAACACATGAAGAGGCACATGCTGATACATACGGGGGAGAAACCGTTCGGTTGCGGCCTTTGCGATTATAGGTCAATTACAGAAAGCGTGCCCGTTTTGGAGCCCAACTCGCGAACGAAGAAAAAGCCCCCTCTTAAATTTGAACACTGCGATTTCAAGTCCGACCGTTCCGGTACCATGACGAAGCACGCCCCGacgcacaccggcgaaaagccCTTCGCGTGTAAACTGTGCGAGTACAGATCGTCTCTGTCCGCGAATTTCAAGCGACACCTGAGAAGGCACGCGATAGAAAACGAAGCCGAAAAGCCATTCGCTTGCGACGTCTGCAGCTTTAAAACGCACGACCCCTACAACCTGAAAAGACACGCGTTCAGACACGGCGGCGAGAAGCAGTTTCAATGCGACCGCTGCGGCAATAAGTTCGCCTCGCTCCCCGGTTTAAAGACGCATTTGATGCGacacaccggcgaaaagccgCACGAGTGCAACATTTGCGGCTACAAGTGCAACCAGGTCGGCACGTTGAATCGACACGTCATGCTGCACACCGGCGCGAAGCCTTTTCAGTGCAACGAGTGCGATTACAAGGCCGCCATTAGGGGTAATCTCATAAAACATATGGTCGTACATTCCGCGGAGAAACCGTTCAAGTGTGACGTCTGCGATTATAGAACGAACAGCGCCAAAAGCTTGAAAGCTCACAAGATAACGCACACGGGCGAGAGGCCGTTTAAATGTGGCATCTGCGACAAGAGGTTGACCAGTTCCAAGAGCATGAAAAGACATCTGTTGATACATACGGGTGAAAAGCCGTTTGCGTGCCGTTTCTGCGATTATAGATCCGAACAGATGGGAAATGTGAAAACACATATGAAACACAAACATAAGCAGTTTCTTGAGAAAAAGGTCACCGCCGAATTGATCGATTACGCAGATCCCTTATTAACCGCCAACAACAAAACGGGACGAAAGATGGCGCCAAATTCCGACAGCAAACGTTTCAAATGCGAACTGTGCGATTTCAAGTGCACGCGCAAAATTAACTTGAAGCGGCACGTGCTGACACATACCGGCGAGTACCCCTTCGGATGCGAATACTGCCTCCACAGATCCGCCACTTCCGCCCAACTCGAGACGCACATGTCGACACACACCGCTGCGAAGCAGTTTTCATGCGAGCTTTGTGATTATAAGTCTGAGGTAGCTCGTTACTTTAAGAGGCACGTCAAGACGCACAGCGTCAAAAAGCCGTATCAGTGCGACCGTTGCGGCAATCAGTTTAGAGTACTCAGTGTGTTGAAGTCGCACATGTTTCGCCACGACGGCGAAAAACCATATAAGTGTAACCAGTGCGATTATAGATCCACGCAAGTAGGCACATTAAACCAGCACATGCTGACGCACACCAGCGAGAAACCTTTCCAGTGCAACCAATGCGAGTACAGGGCGCACTTGAAGAAAAGCGTCACGATACACATGCTCACGCACACGAAGGAGAGGGCGTTCAAGTGCGACATTTGCGATCACAAAACGAAAACCTCGGCCGCTCTGAAGACGCACAAGCGGTCgcataccggcgagaaaccaTACAAGTGCAACGTGTGCGCGAAGAGGTTTAGTGTTTCTAGGGGTTTGACGAGGCACATGCttatacacaccggcgagaagccctACGCGTGCAAGTTTTGTGACTACCGGTCTACACACGGGGAAAATGTGAGGACGCATATTAAGCACAGACACAAGGAGCACTGCGTTAACGTCACCAAgttaCTTAAAAAATTTCTGACGGCTCAAGAATTAAAAACGGAATACAAAAGACCATACGACTACGGCGGGCCGTTGAAATTCGAACTCCACGATTTTGAGCCGAACTGGTCCGCAAGGCACGTCTTCCCACATACCGGAGCAATGCCTCACGTACGTAGACGCGGTGATTGCAGACGCCAACGTCTCCTCCAGCCGGGGAAGAAAGGTCGGAAACGCGGCGTGGTCCAACTTGCGTGCGAGACGTGCGATTTTAGAACTACCAGGCCTTGCCACCTGAAGAAGCACGTGGCCACGCACGATAAGCCGTTCCAGTGCGATCGCTGCGGCATTCAGTTTGCGTCGTCCTCCACCTTGAAGACGCACATATTCCgtcacaccggcgagaaaccgcaCAAGTGTCACATTTGCGGCTACAAGTGCACCCAAATTGGAATATTAACGCGGCACATGATGACACATAGCGGCGATAAGCCTTTCCGTTGCAGCCAGTGCGAATACAGGGCGTGCAGCAGAGGAAACATAGACGCCCACATGGTCACGCATACGAAGGAGAAGGCCTTCAAGTGCGATATTTGCGAGTACAAAGCCAGGACTGCTGAGACCTTGAAGGTGCACAGGCGGtcgcacaccggcgagaaaccgtacCAGTGCGACGTTTGCTTGCGGAGGTTCGGCATCTCCAGGGGTTTGAAGCGGCACATGTTCATACATACGGGCGAGAAGCCTTACGCGTGCAATTTTTGTGATTACAGGTCGACCCATGGGGAAAACGTGAAGACGCACATGAAACATAAGCATAAAGCGGAATACGCTCAAGAGTTTAACGTTACTAAATCTGATCCATCACATGgataa
Protein Sequence
MLRHTKKTFLSTPAFPQNTDLLATHPLNELCDSDSRYSDIAKQHVLTHTDEKIYACKSCEYRCADFANLKRHVKNHVTKDELSRIEEQFVCELCSFETAKAEYLKKHMKRHVGRKRFACDICGDKFSQGTTLKTHMLRHTGEKPHECNICGYKCNQIGTLNRHVMLHSGAKPFHCNKCDYRATLKDPFFSPITKTSNAINHAQTHTDEKPLARANFKRRLAKRTESNKKRNRIEKWHSCELCDYKTRQAHHLKNHMTTHSGQKLFQCDRCGVKFTALTSLKTHMLRHTGEKPYKCHICEYRCNQVGTLNRHILLHTGAKPFQCNTCDYRAATKGNINKHMVRHSAERPFECNLCDYKSSTTNSLKRHKMTHTGEKPFECVLCTKRFTCTKHMKRHMLIHTGEKPFGCGLCDYRSITESVPVLEPNSRTKKKPPLKFEHCDFKSDRSGTMTKHAPTHTGEKPFACKLCEYRSSLSANFKRHLRRHAIENEAEKPFACDVCSFKTHDPYNLKRHAFRHGGEKQFQCDRCGNKFASLPGLKTHLMRHTGEKPHECNICGYKCNQVGTLNRHVMLHTGAKPFQCNECDYKAAIRGNLIKHMVVHSAEKPFKCDVCDYRTNSAKSLKAHKITHTGERPFKCGICDKRLTSSKSMKRHLLIHTGEKPFACRFCDYRSEQMGNVKTHMKHKHKQFLEKKVTAELIDYADPLLTANNKTGRKMAPNSDSKRFKCELCDFKCTRKINLKRHVLTHTGEYPFGCEYCLHRSATSAQLETHMSTHTAAKQFSCELCDYKSEVARYFKRHVKTHSVKKPYQCDRCGNQFRVLSVLKSHMFRHDGEKPYKCNQCDYRSTQVGTLNQHMLTHTSEKPFQCNQCEYRAHLKKSVTIHMLTHTKERAFKCDICDHKTKTSAALKTHKRSHTGEKPYKCNVCAKRFSVSRGLTRHMLIHTGEKPYACKFCDYRSTHGENVRTHIKHRHKEHCVNVTKLLKKFLTAQELKTEYKRPYDYGGPLKFELHDFEPNWSARHVFPHTGAMPHVRRRGDCRRQRLLQPGKKGRKRGVVQLACETCDFRTTRPCHLKKHVATHDKPFQCDRCGIQFASSSTLKTHIFRHTGEKPHKCHICGYKCTQIGILTRHMMTHSGDKPFRCSQCEYRACSRGNIDAHMVTHTKEKAFKCDICEYKARTAETLKVHRRSHTGEKPYQCDVCLRRFGISRGLKRHMFIHTGEKPYACNFCDYRSTHGENVKTHMKHKHKAEYAQEFNVTKSDPSHG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00465627;
90% Identity
iTF_00465627;
80% Identity
iTF_00465627;