Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065425.1:69758639-69777647[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.0065 9 8.0 0.0 21 44 10 33 7 38 0.91

2 24 0.0047 6.6 8.5 0.7 26 45 43 62 38 71 0.85

3 24 0.0041 5.7 8.7 0.0 22 45 92 115 86 123 0.85

4 24 0.24 3.4e+02 3.0 0.2 21 49 119 146 116 150 0.87

5 24 0.2 2.7e+02 3.3 0.8 17 44 143 170 131 178 0.85

6 24 0.013 18 7.0 0.0 22 48 201 227 195 233 0.85

7 24 0.31 4.3e+02 2.6 0.1 21 48 228 254 225 256 0.90

8 24 0.0024 3.3 9.4 0.0 18 54 253 289 251 289 0.90

9 24 0.1 1.4e+02 4.2 0.1 16 51 353 388 348 391 0.82

10 24 1.9 2.6e+03 0.1 0.1 21 45 386 410 383 417 0.86

11 24 7.6 1.1e+04 -1.8 0.2 21 31 414 424 396 440 0.70

12 24 0.42 5.9e+02 2.2 0.3 21 47 442 468 437 474 0.85

13 24 0.25 3.5e+02 2.9 0.0 26 44 530 548 519 557 0.84

14 24 1.1 1.6e+03 0.8 0.0 22 44 628 650 622 655 0.86

15 24 0.011 15 7.3 0.2 22 52 656 686 653 686 0.87

16 24 0.44 6.2e+02 2.1 0.1 21 44 683 706 681 715 0.87

17 24 0.77 1.1e+03 1.4 0.2 25 51 715 741 708 744 0.78

18 24 3.2 4.5e+03 -0.6 0.1 21 43 739 761 735 772 0.84

19 24 0.028 39 6.0 0.1 21 44 795 818 783 826 0.91

20 24 0.39 5.5e+02 2.3 0.1 24 52 826 854 820 855 0.85

21 24 0.63 8.7e+02 1.7 2.0 20 44 850 874 834 878 0.77

22 24 2.4 3.4e+03 -0.2 0.0 21 45 953 977 949 984 0.80

23 24 0.019 26 6.5 0.2 22 52 982 1012 978 1013 0.87

24 24 0.028 39 6.0 0.1 18 46 1034 1062 1026 1065 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.0065	9	8.0	0.0	21	44	10	33	7	38	0.91
2	24	0.0047	6.6	8.5	0.7	26	45	43	62	38	71	0.85
3	24	0.0041	5.7	8.7	0.0	22	45	92	115	86	123	0.85
4	24	0.24	3.4e+02	3.0	0.2	21	49	119	146	116	150	0.87
5	24	0.2	2.7e+02	3.3	0.8	17	44	143	170	131	178	0.85
6	24	0.013	18	7.0	0.0	22	48	201	227	195	233	0.85
7	24	0.31	4.3e+02	2.6	0.1	21	48	228	254	225	256	0.90
8	24	0.0024	3.3	9.4	0.0	18	54	253	289	251	289	0.90
9	24	0.1	1.4e+02	4.2	0.1	16	51	353	388	348	391	0.82
10	24	1.9	2.6e+03	0.1	0.1	21	45	386	410	383	417	0.86
11	24	7.6	1.1e+04	-1.8	0.2	21	31	414	424	396	440	0.70
12	24	0.42	5.9e+02	2.2	0.3	21	47	442	468	437	474	0.85
13	24	0.25	3.5e+02	2.9	0.0	26	44	530	548	519	557	0.84
14	24	1.1	1.6e+03	0.8	0.0	22	44	628	650	622	655	0.86
15	24	0.011	15	7.3	0.2	22	52	656	686	653	686	0.87
16	24	0.44	6.2e+02	2.1	0.1	21	44	683	706	681	715	0.87
17	24	0.77	1.1e+03	1.4	0.2	25	51	715	741	708	744	0.78
18	24	3.2	4.5e+03	-0.6	0.1	21	43	739	761	735	772	0.84
19	24	0.028	39	6.0	0.1	21	44	795	818	783	826	0.91
20	24	0.39	5.5e+02	2.3	0.1	24	52	826	854	820	855	0.85
21	24	0.63	8.7e+02	1.7	2.0	20	44	850	874	834	878	0.77
22	24	2.4	3.4e+03	-0.2	0.0	21	45	953	977	949	984	0.80
23	24	0.019	26	6.5	0.2	22	52	982	1012	978	1013	0.87
24	24	0.028	39	6.0	0.1	18	46	1034	1062	1026	1065	0.89

Sequence Information

Coding Sequence: ATGAAGACACACAAATTAGGACATACCAACGAGAGGCCCTTCACTTGTGAAATTTGCGATCGTAATTTCAGAGAACTTGGAACCTTGAAACGGCACTTGTTAACGCACAACAAAGGGGAGCGCTTCACTTGTGAATTTTGCGATTGTAATTACAGACAACGTAAAAActtgaaacggcacatgttaGCGCACAACAAAGAGAAGCCCTTCACTTGTAAAACTTGCGATCGTAAATCCAAACGGCTCGCAATCTTGAAACAGCACACGTTAACGCAGAAGCCCTTCACGTGTAAAACTTGCGAGCGTGGATTCACACAAATGAGAGACTTGAAACGCCATTTGTtaacacacaccgacgagaaacctttcagttgcgatctttgcgattacaggtGTCGACGATCCGAAAGTATGAAGGAACACAAATTAAGACATACCAACGAGAAGCCCTTCGCTTGTGAAAATTGCGATTGTAAGTTTAGAGGACTTAAAACCTTGAAACGACACGTGTTAACGCACAACAAAGAGAAGCCCTTCACTTGTAAAACTTGCGATCGTAAATCCGAACGGCTCGCAATCTTGAAACAGCACACGTTAACGCAGAAGCCCTTCACTTGTAAAACTTGCGAGCGAGGATTCACACAAATGAAAGACTTGAAACGCCATTTattaatacacaccgacgagaaacctttcagttgcgatctttgcgattacaagtgtcgaCGATCCGAAAGTATGAAGGAACACAAACTAAGACATACCAACGAGAAGCCCTTCACGTGTGAAATTTGCGGTCGTGGATTCACACGAATGGGAACATTGAAACGCCACTTGTTAAACACACACAGTGCAGTTGAGGGTGTCAACAAGAGGCGTATTACTCAGAACGACTTGGCGAAAATTTTTGGTAAACGTTGCTTCGTTGTCTTGACCCGCTGCGCGTCGCTGCCAACTAAAAGTAAACAGCCGCGACTTCGCAAGTGTGCAAACGCAAACCTGTACAGGTGCGATCTTTGCCGTTACAGGTGTAAAAAACTCAAAACGTTAGAAACCCACACGAGAAAACACACCGAGAGACCTTTCAAATGTAACATCTGTGATTTCAGATTTACAAgcatacaatttttaaaaaggcacgttaAGACGCACACCGATGAAAAACCGTTCGTGTGCGAGCAATGCGATTACAAGTGCAGATCGCGTTCTAATTTACTTCAGCACTTGACGACACACAGTGACGAGAGGCCTTTCCGATGTGAAATATGTGATTCTAGATTTACAAGTGTATATGTCTTAAAAATACACATTAAGACGCACACCGATGAAAAGCCGTTCGCGTGCGAGAAAtgcgattacaaatgcagaTTGCGTCCTAATTTACTTCGCCACTTAACGACGCACAACGAAGAGAAACCTTTCAGATGTGACGCATGTGATTTTAGGTGTAAAACCTTACAAAGTTTGAAATTGCACGTTACGAAGCACACCGATGAAAAACCGTTCGAGTGCAGGAAGTGCCCTTGTAGATTCAAATCGCGTCAGAGTTTGTGGCGGCACTCACTGGTACATAATGAGGTGGTGTACAGATGTAGCGTATGTGATTTCGGATTTAAAACTTCGCAAACTTTAAGACGTCACATGATAACGCACACGGACGAGAAACCGCTTACGTGTGCGAAgAGGCGCATGACTCAGAATGACTTGGAGAATATTTTTCGCAAACGTTGCGTCGTCGTTTTGACTCGCTGTGTGCCACTCGAAAAAAAGCAGCCGGGCTATCGCGACTACGATCCCAAAAAGCGGTTCAGATGCAACATTTGCGACTACAAGTGTAGGACCCCTAGAATGTTGAAAATACACGTAATGAAACATACCGGCGAAAACTCCGTCAAGTGTAGCATATGTGATTTTAAAAGTAGATatcaagaaaatttgaaaacccACATGCTGATACACACCGATGAGAAACCGTTTAAGTGTAGCAAGTGCGATTACAGGAGCAGACGTAAGAACAATTTCCGTCGACACTTGAAGATACACAACGACGAGAAGCCTTTCAAATGTAACATATGCGATTTTAGGTGCAAAACTTTGCAAAACTTGAAAAGTCACATCTTGAAGCACACCGATGAAAGGCGGTTTAAGTGTAACAAGTGCGGTTTCACGTTCAGAGAGCGTGGACATTTGCGGCGACACTTGATGACGCACAATAACGAAAAGCCTTTCAGTTGTAAAACGTGTGATTTTAGATGTAGAAGCGCGcagcatttaaaaaatcacaatgTGAAGCACACCAATGAAAAGCCGTTTAGTTGCAACAAGTGCGCTTACAGGGGCGGAAGGCCTGGGGATTTACGTCTACACTTAACGACACACGACGATGAGAAACCTTTCAAATGTGACATttgtaattttgaatgcaaGAGATCGCAAATTTTAAGGGAACATCTTTTGACGCACACCGATGAGAAAACATTTAAGTGTGGCAAATGCGATTTCAGGAGCAGACAGCCTTCGACTTTACACAAACACTTTAAGCTTCATCACGTCAAGCAGCCGTTCAGATGTAACGTGTGTGATTTTAGATGTGGACTTTCACGTACTTTGACAAGACATGTGTTGACACATAGCGAGGAACAAAAGTTCAAGTGTAACAAGAAGCGCATGACTCAGAATGACTTGgagaatatttttcgtaaacgttGCGTCATCGTCTTGACTCGCTGTGTGCCACTCAAGAAAAAGCAGCCGGACTATCGCGACTGCGATCCCGAAAAGCGGTTCAGATGCAACACTTGCGACTACAAGTGTAAGACCCCTAGAATGTTTAAAATTCACGTAATGAAACACACCGGCGAAAACCCCGTCAAGTGTAACGTATGTGATTTTAAAAGTAGATCTCAAGGAAGTTTGAAAACCCACATGCTGATACACACCGATGAGAAACCGTTTAAGTGCAGCAAGTGCGAGTACAGGGGCAGACTTAAGATCAATTTACGTCGACACTTGAAGATACACAATGACGAAAAGCCTTTCAGATGTAACATATGCGAGTTTAAGTGCAAGACTTTAGAAAGCTTGAAAAGTCATACCTTGAGGCACACCGATGAAAGGCCATTTAAGTGTAACAAGTGCGGTTTCACGTTCAGAGAGCGCGCACATTTGCGGCGACACTTGATGATACACAATAACGAAACCCTTTCAGTTGTAAAACATGCGATTTTAGATGTAGAAGTTCGCAACACTTAA
Protein Sequence: MKTHKLGHTNERPFTCEICDRNFRELGTLKRHLLTHNKGERFTCEFCDCNYRQRKNLKRHMLAHNKEKPFTCKTCDRKSKRLAILKQHTLTQKPFTCKTCERGFTQMRDLKRHLLTHTDEKPFSCDLCDYRCRRSESMKEHKLRHTNEKPFACENCDCKFRGLKTLKRHVLTHNKEKPFTCKTCDRKSERLAILKQHTLTQKPFTCKTCERGFTQMKDLKRHLLIHTDEKPFSCDLCDYKCRRSESMKEHKLRHTNEKPFTCEICGRGFTRMGTLKRHLLNTHSAVEGVNKRRITQNDLAKIFGKRCFVVLTRCASLPTKSKQPRLRKCANANLYRCDLCRYRCKKLKTLETHTRKHTERPFKCNICDFRFTSIQFLKRHVKTHTDEKPFVCEQCDYKCRSRSNLLQHLTTHSDERPFRCEICDSRFTSVYVLKIHIKTHTDEKPFACEKCDYKCRLRPNLLRHLTTHNEEKPFRCDACDFRCKTLQSLKLHVTKHTDEKPFECRKCPCRFKSRQSLWRHSLVHNEVVYRCSVCDFGFKTSQTLRRHMITHTDEKPLTCAKRRMTQNDLENIFRKRCVVVLTRCVPLEKKQPGYRDYDPKKRFRCNICDYKCRTPRMLKIHVMKHTGENSVKCSICDFKSRYQENLKTHMLIHTDEKPFKCSKCDYRSRRKNNFRRHLKIHNDEKPFKCNICDFRCKTLQNLKSHILKHTDERRFKCNKCGFTFRERGHLRRHLMTHNNEKPFSCKTCDFRCRSAQHLKNHNVKHTNEKPFSCNKCAYRGGRPGDLRLHLTTHDDEKPFKCDICNFECKRSQILREHLLTHTDEKTFKCGKCDFRSRQPSTLHKHFKLHHVKQPFRCNVCDFRCGLSRTLTRHVLTHSEEQKFKCNKKRMTQNDLENIFRKRCVIVLTRCVPLKKKQPDYRDCDPEKRFRCNTCDYKCKTPRMFKIHVMKHTGENPVKCNVCDFKSRSQGSLKTHMLIHTDEKPFKCSKCEYRGRLKINLRRHLKIHNDEKPFRCNICEFKCKTLESLKSHTLRHTDERPFKCNKCGFTFRERAHLRRHLMIHNNETLSVVKHAILDVEVRNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00465160;
90% Identity: iTF_00465160;
80% Identity: iTF_00465160;