Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065425.1:75648569-75661340[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.03 41 5.9 0.1 18 52 75 109 70 111 0.92

2 25 0.0085 12 7.6 0.0 21 46 134 159 124 165 0.87

3 25 0.23 3.2e+02 3.1 0.7 20 51 211 239 196 243 0.77

4 25 0.63 8.8e+02 1.6 0.1 26 45 249 268 242 274 0.85

5 25 0.029 40 5.9 0.7 18 51 302 335 295 337 0.86

6 25 0.0035 4.8 8.9 0.2 18 49 398 429 388 435 0.85

7 25 0.56 7.8e+02 1.8 0.0 22 45 433 456 429 460 0.87

8 25 2.3 3.2e+03 -0.2 0.1 22 44 460 482 456 489 0.83

9 25 0.0013 1.8 10.3 0.2 21 52 556 586 541 588 0.84

10 25 2.3 3.2e+03 -0.1 0.0 26 52 596 622 589 623 0.80

11 25 0.053 74 5.1 0.0 18 47 644 673 641 678 0.89

12 25 0.6 8.4e+02 1.7 0.3 21 48 759 786 736 791 0.90

13 25 1.4 1.9e+03 0.5 0.0 25 45 840 860 829 864 0.84

14 25 7.7 1.1e+04 -1.8 0.0 18 52 887 921 885 922 0.77

15 25 0.048 67 5.2 0.0 21 45 946 970 942 974 0.91

16 25 0.28 3.9e+02 2.8 0.1 22 52 975 1005 970 1007 0.84

17 25 6.2 8.7e+03 -1.5 0.0 21 46 1002 1027 999 1028 0.75

18 25 0.063 88 4.8 0.1 18 52 1164 1198 1159 1199 0.85

19 25 3.3 4.5e+03 -0.6 0.0 21 43 1223 1245 1219 1249 0.88

20 25 0.0051 7 8.4 0.3 22 46 1252 1276 1245 1282 0.82

21 25 0.32 4.4e+02 2.6 0.3 21 48 1279 1306 1276 1309 0.92

22 25 1.9 2.7e+03 0.1 0.0 25 45 1378 1398 1373 1401 0.86

23 25 0.35 4.9e+02 2.5 0.0 21 43 1484 1506 1476 1514 0.87

24 25 0.061 85 4.9 0.1 22 46 1513 1537 1508 1543 0.82

25 25 0.8 1.1e+03 1.3 0.1 21 48 1540 1567 1537 1569 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.03	41	5.9	0.1	18	52	75	109	70	111	0.92
2	25	0.0085	12	7.6	0.0	21	46	134	159	124	165	0.87
3	25	0.23	3.2e+02	3.1	0.7	20	51	211	239	196	243	0.77
4	25	0.63	8.8e+02	1.6	0.1	26	45	249	268	242	274	0.85
5	25	0.029	40	5.9	0.7	18	51	302	335	295	337	0.86
6	25	0.0035	4.8	8.9	0.2	18	49	398	429	388	435	0.85
7	25	0.56	7.8e+02	1.8	0.0	22	45	433	456	429	460	0.87
8	25	2.3	3.2e+03	-0.2	0.1	22	44	460	482	456	489	0.83
9	25	0.0013	1.8	10.3	0.2	21	52	556	586	541	588	0.84
10	25	2.3	3.2e+03	-0.1	0.0	26	52	596	622	589	623	0.80
11	25	0.053	74	5.1	0.0	18	47	644	673	641	678	0.89
12	25	0.6	8.4e+02	1.7	0.3	21	48	759	786	736	791	0.90
13	25	1.4	1.9e+03	0.5	0.0	25	45	840	860	829	864	0.84
14	25	7.7	1.1e+04	-1.8	0.0	18	52	887	921	885	922	0.77
15	25	0.048	67	5.2	0.0	21	45	946	970	942	974	0.91
16	25	0.28	3.9e+02	2.8	0.1	22	52	975	1005	970	1007	0.84
17	25	6.2	8.7e+03	-1.5	0.0	21	46	1002	1027	999	1028	0.75
18	25	0.063	88	4.8	0.1	18	52	1164	1198	1159	1199	0.85
19	25	3.3	4.5e+03	-0.6	0.0	21	43	1223	1245	1219	1249	0.88
20	25	0.0051	7	8.4	0.3	22	46	1252	1276	1245	1282	0.82
21	25	0.32	4.4e+02	2.6	0.3	21	48	1279	1306	1276	1309	0.92
22	25	1.9	2.7e+03	0.1	0.0	25	45	1378	1398	1373	1401	0.86
23	25	0.35	4.9e+02	2.5	0.0	21	43	1484	1506	1476	1514	0.87
24	25	0.061	85	4.9	0.1	22	46	1513	1537	1508	1543	0.82
25	25	0.8	1.1e+03	1.3	0.1	21	48	1540	1567	1537	1569	0.90

Sequence Information

Coding Sequence: ATGAAGAAGCATGTCTTAACGCATACCAAGAGAAATCCACTCGAACACACGAAGAAGCTTACGACGAAAGTTAAAAAGCAATTCGTCTGTGAGATTTGCGGTTTTAAAACAGATAAACATTGGCGTCTCAGGAAGCACCTCAACGGTCACGAGAGACCGTATCAGTGTGATCGCTGCGGCCACACGTTCGCCGCACTTGCCCATTTGAAGACGCATATGAGGCGACACACCGGCGAAAAACCGTACAAGTGCAACgcttgcgattataaatgcactCAGTCCTGTCAGCTCTGGACGCATATGAAGCTACACACCGGCGCGAAGCCGTTTCTGTGCGACAAGTGCGATTACAGAGCCGCCCTGAAAGGTAACCTCACGAAACATATGGTCTCACATTCCACGGAAAAGCCGTTCAAGTGTAACATCTGCGATTTTGAGACGAAAACTTCCAAACATTTAAAGAGACACGTAAAAGTACACACGGGCGTGAAGGAATTCGAATGTAGCGTTTGCACTATGAGATTTAATGATTCGCAGGGCATAAAAAGGCATATGTTAGTTTTCAAATGCCGATATTGCGATTACAAGGCGAATCGTGCCAGCATTCTCGAGAAACATGTTTGcacgcacaccggcgagaaaccgtacGAATGTAAATTGTGCGACTACAAGCCCGGAAACCTCAAGAGGCACATGAGGCTACATCATGCTAAGAAAAAAGACGAAGGGACAGAACCTGAGTTCGCATGTGAGGTTTGTAACTTTAAGACGGCGCAAGCCGATTATTTGAGGAGGCACATGAAAAGACACAGTGAACAGAAACAGGTCCAGAGCTTGAAGTACAAATGTCAGTACTGTGATTACGAGGCGAGTCGGGCCAGTACTCTCAAGGATCATGTTTTTAGgcacaccggcgaaaagccgCACAAATGTAAATTGTGCGAGTACAGGTGCTCTCTGCCTGGAAATCTCAGGAGGCACGTGAGGCGACATCACGTTAAGAAAAAAGACGAAGTGGCAGAATCCGAGTTTGCATGCGGGGTTTGTGATTTTAAAACGACGGAGGCCGATTATTTGAGGAAGCACATGAAAAGGCACAGCGAACAGAAGCCGGTTCAGAGTTCGAAGTTCAAATGTCAGTATTGTGATTACGAGGCGAGTCGGGCCGGCACTCTCAAGGATCACGTTCTTAggcataccggcgagaagccgcaCGAATGTAAACTGTGCGATTACAGGAGCACTCTGCCCGGAAATCTCAAGAGGCACATGAGGCTACGTCATGCCAAGGAAGCCGAATCCGGGTTCACGTGTGAGGTTTGTGATTTTAAAACGACGCAAGCCGATTATTTGAGGAAGCACATGAAAAGACACGGCGATCAGCGGTTCGCCTGTAAATTGTGCGATTACAAATGCGTCGAGTCCCGAGACTTCAAAAGGCACACGATAATGCATGAGGTGAAGGAAAAAGGCGAGGAGTACGAATATAAATTCACGTGTGATATCTGCGGTTTTAAAACCATTCTAGCTGGTTACTTGAACAAACACATGAAGCAACACGCCGGTCAAAAACCACCGTCTAATTGTGTGTGGCGTAAATGTAATTATTGCGATTATAAGTCGAATTCCCCCGCCACTCTTCGAAAACATATGTTTACCCATagcggcgagaagccgttcgcaTGTAAATCGTGCAGTTACAGGAGTAGCACGTCCAGGAACCTCCAGAGGCATTTGAAAACGCACATGGCGAAAGAAAAGGTCCAGGACGCTGACAAGAAATTCATGTGTGAGGTCTGCAGTTTTAAAACCACTACGGCCAGATATCTGAGGAAACACATGTTGATACACAGCACCGAGAAGCCGTTTCAGTGCGACCGCTGCGGCCAAAAATTCTCGTCGAACACCATCTTAAAGATGCACATGGTGCGACATACCGGGGAAAAACCGTACGAGTGCGACATCTGCGGCTATAAGTGTTATCAGGGCGGCACAATGAAGCGTCACCTCGTGCTGCACACCGGCGTGAAAACCTTTCAGTGCAACAAGTGCGATTATAAGGCGGCCGTAAGAGGTGCCATCACGAAACACATGGCCACGCATTCCACGGAGAAACCGTTCGAGTGCCACGTTTGTAAATACAAGACGAAAACCCCGAATTGTTTAAAAAGTCACATGCTAACGCACACAGGCGAGCGGTTGTATAAATGTAGCACTTGCTGCAAGAGGTTCTCGCGTAGCAAGGACTTGAAAAAGCACACGTTGATACACACGGGGGAGAAACCGTTCGCGTGTAACTTGTGCGATTACAGATCGACCCAGAAGTCAAATGTGACGATACACATGAAGCACAGACATAAGGAAGTTACTGCAAAAAGCGTTGGCATTGAAGAGAACAAAACCGTCTCTCTTACCACAAGACCGCAAACGAAAGAAACGAAAAGACACGTTTTAACATGCGAGTTGAAATATAGCAAATGTTTAAAAGCGCAGCACACGACGGAAGATCAAAAACGATTCGCATGTGAGATTTGCGGTTTCAAAACAGAGAAACGTAGAAATCTCAAGAGCCACGTCAACAGGCACGGGAAATCGTGCCAGTGCGATTGCTGCGGCAATATTTTCAAGTCGCTTGCCATTTTGAAACTACACATGAGGCGACATACCGGCGAAAAACCGTACAAGTGCAACCTTTGCGATTATGAATCTACTCAGGCAGGCACCCTCTTGTCTCACAGTAGGGTACACACCGGCGCGAAACCTTATCAGTGTGATAAATGCGATTACAGGGCTGCGCTAAAAGGTACCCTCACGAGACATATGGTTACGCATTTCGCAGAAAGGCCGTTCAAGTGTGACATCTGCGATTTCGATGCGAAAAGCTCCAGAACTTTAAAGAAACATGTAAAGAAACACACGGGCGAGAAGGAATTCGAGTGTAGCGTTTGCAGTAAGAGATTGGCGTGCTCCAAGAGCCTGAAAAGGCATATGTTCTTACACACGGGGGAAAAGCCGTTTGCCTGTAATTTATGCGATTACAGATCTACTGAACAGTCAAATGTGAAAGTACACATGAAgTTACCTACACAAAGCAACGCAAGTGCGGCTTTTGAAGAGGACGAGACAGTTTCGTGGGTCTCCCCTACCGCAGACATGGGTTCTCTGAATCAGCTGTTTACGAATGAAACATACTTGTTGAAATACTCGTATAGCGTACCTGAAAAGCTATTTAAATGTGAATACTGCGATTACAAATCCGACCGTTCTGCTTCTATGAAGAAACATGTCTTGAGGCATACCAGGAGGAAGCTACTTGAATCCGGGTTGAAATATCCCGGCTTTGAAACTTTGGTGTGTGAGATTTGCGGTTATCAAACAGATGAAGCCGCATATCTCAAGAGCCACCTCAATAAACATGAGAAGTCGTACCAGTGCGATCGCTGCGGCGGTACATTCTCCACGCTTGCCAATTTGAAATCGCATATGCGCCGACATACCGGGGAAAAACCGTACAAGTGCAacgtttgcgattataaatgtatTCAAGCCTCCCAGCTCTGGGTGCATCTTAAGATACACACCGGTGCGAAGCCTTTTCACTGCGACAAGTGCGATTACAAAGCTACTCTGAAGCGCAGCCTCACGAGACACATGGTCACGCATTCCACAGAGAAGCCGTTCAAGTGTAACTTCTGCGATTTCGAGACGAAAACCTCCAGGGATTTAACGTGTCACAAGAGAACGCACACGGGCGAGAAGTCGTTCGTATGTAGTGTTTGCACTAAGAGATTCACCAGGTCCAGAAACTTGAAGAGGCATATTTTAATACATGCAGGAGAGAAACCGTTCGCGTGTAATTTGTGCGATTACAGATCTACTCAGCGGTCAAACGTGAAATTACATATGAAACACAGACATAAGGAATGCGCCGATGGTACACGTTTTGGAGAGAACGAATTTCTTTTGAGGATATCCCCCATCACAGAAACGGAACCGAAGGAAACAGGCTCTGCGAATCAGCTGGTTAAATGCGAACGTGGCGATTCTATGAAGAAACATGTTTTAACGCGTACGAATCTGTCCGTATATCAAATATGCGAGTTCAaatacgttaaaaaaattaaaagacaaagCGTATGCGAGATTTGCGGTTTTAAAACAGATAGAACTGGAAACCTCAAGAGGCACATGAAAGCACACGAGAAATCGTATCAGTGCGATCGCTGCGGAAACACCTTCACCAGAACTACCACTTTGAAATCGCATATGAGGCAACATACCGGGGAAAAGCCGTATAAGTGCAacgtttgcgattataaatgctcTCAGTTCTGTCTCCTCTGGGCACATAATAAGATACACGCCGGCGCAAAGTCCTATCGGTGTAACAAATGCGACTTTAGGGCTACCTTGAAGGGTAACCTCACGAAACATATGGTTACGCATTCCACAGAGAAGCCGTTCAAATGTAACGTCTGCGATTTCGAGACGAAAACCTCCGCACATTTAAAGCGACACGAGAAAAAGCACACAGGCGAGAAGGCGTTCGAGTGCAGCGTCTGTACTAAGAGATTCACTACTGCCAGAAACTTGAAAAGGCACGTTTTAATACATGCAGGGGAAAAACCATTTGCTTGCAATTTATGTGATTACAGATCTACTCAGCGGTCAAACGTAAAAGCGCACATGAAACACAAACATAAGGAATGTGAAAATGCTGCACATAAAATTGAAGCGACATAA
Protein Sequence: MKKHVLTHTKRNPLEHTKKLTTKVKKQFVCEICGFKTDKHWRLRKHLNGHERPYQCDRCGHTFAALAHLKTHMRRHTGEKPYKCNACDYKCTQSCQLWTHMKLHTGAKPFLCDKCDYRAALKGNLTKHMVSHSTEKPFKCNICDFETKTSKHLKRHVKVHTGVKEFECSVCTMRFNDSQGIKRHMLVFKCRYCDYKANRASILEKHVCTHTGEKPYECKLCDYKPGNLKRHMRLHHAKKKDEGTEPEFACEVCNFKTAQADYLRRHMKRHSEQKQVQSLKYKCQYCDYEASRASTLKDHVFRHTGEKPHKCKLCEYRCSLPGNLRRHVRRHHVKKKDEVAESEFACGVCDFKTTEADYLRKHMKRHSEQKPVQSSKFKCQYCDYEASRAGTLKDHVLRHTGEKPHECKLCDYRSTLPGNLKRHMRLRHAKEAESGFTCEVCDFKTTQADYLRKHMKRHGDQRFACKLCDYKCVESRDFKRHTIMHEVKEKGEEYEYKFTCDICGFKTILAGYLNKHMKQHAGQKPPSNCVWRKCNYCDYKSNSPATLRKHMFTHSGEKPFACKSCSYRSSTSRNLQRHLKTHMAKEKVQDADKKFMCEVCSFKTTTARYLRKHMLIHSTEKPFQCDRCGQKFSSNTILKMHMVRHTGEKPYECDICGYKCYQGGTMKRHLVLHTGVKTFQCNKCDYKAAVRGAITKHMATHSTEKPFECHVCKYKTKTPNCLKSHMLTHTGERLYKCSTCCKRFSRSKDLKKHTLIHTGEKPFACNLCDYRSTQKSNVTIHMKHRHKEVTAKSVGIEENKTVSLTTRPQTKETKRHVLTCELKYSKCLKAQHTTEDQKRFACEICGFKTEKRRNLKSHVNRHGKSCQCDCCGNIFKSLAILKLHMRRHTGEKPYKCNLCDYESTQAGTLLSHSRVHTGAKPYQCDKCDYRAALKGTLTRHMVTHFAERPFKCDICDFDAKSSRTLKKHVKKHTGEKEFECSVCSKRLACSKSLKRHMFLHTGEKPFACNLCDYRSTEQSNVKVHMKLPTQSNASAAFEEDETVSWVSPTADMGSLNQLFTNETYLLKYSYSVPEKLFKCEYCDYKSDRSASMKKHVLRHTRRKLLESGLKYPGFETLVCEICGYQTDEAAYLKSHLNKHEKSYQCDRCGGTFSTLANLKSHMRRHTGEKPYKCNVCDYKCIQASQLWVHLKIHTGAKPFHCDKCDYKATLKRSLTRHMVTHSTEKPFKCNFCDFETKTSRDLTCHKRTHTGEKSFVCSVCTKRFTRSRNLKRHILIHAGEKPFACNLCDYRSTQRSNVKLHMKHRHKECADGTRFGENEFLLRISPITETEPKETGSANQLVKCERGDSMKKHVLTRTNLSVYQICEFKYVKKIKRQSVCEICGFKTDRTGNLKRHMKAHEKSYQCDRCGNTFTRTTTLKSHMRQHTGEKPYKCNVCDYKCSQFCLLWAHNKIHAGAKSYRCNKCDFRATLKGNLTKHMVTHSTEKPFKCNVCDFETKTSAHLKRHEKKHTGEKAFECSVCTKRFTTARNLKRHVLIHAGEKPFACNLCDYRSTQRSNVKAHMKHKHKECENAAHKIEAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00465151;
90% Identity: iTF_00465151;
80% Identity: iTF_00465151;