Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065425.1:73279686-73282468[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.042 59 5.4 0.4 26 44 11 29 5 37 0.85

2 23 0.58 8.1e+02 1.8 0.0 21 48 34 60 30 64 0.89

3 23 6 8.3e+03 -1.5 0.1 22 44 64 86 57 93 0.78

4 23 2.6 3.6e+03 -0.3 0.0 27 44 96 113 91 120 0.83

5 23 0.047 65 5.3 0.0 22 43 119 140 115 146 0.89

6 23 0.02 28 6.4 0.0 19 48 172 201 165 203 0.89

7 23 0.011 15 7.3 0.1 18 43 261 286 257 293 0.88

8 23 3.6 5e+03 -0.8 0.1 21 44 292 315 289 319 0.80

9 23 1.9e-05 0.026 16.2 0.7 21 48 320 346 317 349 0.91

10 23 0.18 2.4e+02 3.4 0.2 21 51 349 378 346 381 0.84

11 23 3 4.2e+03 -0.5 0.1 26 48 381 402 376 408 0.85

12 23 0.016 23 6.7 1.6 19 44 402 427 385 436 0.80

13 23 0.14 2e+02 3.7 0.1 9 48 448 487 443 489 0.80

14 23 0.00033 0.45 12.2 0.2 21 52 507 538 497 540 0.88

15 23 0.0025 3.5 9.3 0.2 23 43 537 557 534 566 0.90

16 23 5 7e+03 -1.2 0.0 22 44 564 586 559 592 0.85

17 23 1.7 2.4e+03 0.2 0.1 26 44 596 614 588 618 0.86

18 23 2.2 3e+03 -0.1 0.1 26 44 625 643 623 651 0.87

19 23 1.5 2.1e+03 0.4 0.1 26 47 652 673 647 679 0.87

20 23 3.3 4.6e+03 -0.7 0.0 24 48 678 701 673 707 0.84

21 23 4.9 6.8e+03 -1.2 0.1 27 45 709 727 700 733 0.83

22 23 2.4 3.3e+03 -0.2 0.1 23 44 733 754 727 758 0.85

23 23 0.44 6.1e+02 2.2 0.3 26 44 762 780 755 785 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.042	59	5.4	0.4	26	44	11	29	5	37	0.85
2	23	0.58	8.1e+02	1.8	0.0	21	48	34	60	30	64	0.89
3	23	6	8.3e+03	-1.5	0.1	22	44	64	86	57	93	0.78
4	23	2.6	3.6e+03	-0.3	0.0	27	44	96	113	91	120	0.83
5	23	0.047	65	5.3	0.0	22	43	119	140	115	146	0.89
6	23	0.02	28	6.4	0.0	19	48	172	201	165	203	0.89
7	23	0.011	15	7.3	0.1	18	43	261	286	257	293	0.88
8	23	3.6	5e+03	-0.8	0.1	21	44	292	315	289	319	0.80
9	23	1.9e-05	0.026	16.2	0.7	21	48	320	346	317	349	0.91
10	23	0.18	2.4e+02	3.4	0.2	21	51	349	378	346	381	0.84
11	23	3	4.2e+03	-0.5	0.1	26	48	381	402	376	408	0.85
12	23	0.016	23	6.7	1.6	19	44	402	427	385	436	0.80
13	23	0.14	2e+02	3.7	0.1	9	48	448	487	443	489	0.80
14	23	0.00033	0.45	12.2	0.2	21	52	507	538	497	540	0.88
15	23	0.0025	3.5	9.3	0.2	23	43	537	557	534	566	0.90
16	23	5	7e+03	-1.2	0.0	22	44	564	586	559	592	0.85
17	23	1.7	2.4e+03	0.2	0.1	26	44	596	614	588	618	0.86
18	23	2.2	3e+03	-0.1	0.1	26	44	625	643	623	651	0.87
19	23	1.5	2.1e+03	0.4	0.1	26	47	652	673	647	679	0.87
20	23	3.3	4.6e+03	-0.7	0.0	24	48	678	701	673	707	0.84
21	23	4.9	6.8e+03	-1.2	0.1	27	45	709	727	700	733	0.83
22	23	2.4	3.3e+03	-0.2	0.1	23	44	733	754	727	758	0.85
23	23	0.44	6.1e+02	2.2	0.3	26	44	762	780	755	785	0.78

Sequence Information

Coding Sequence: ATGAGTGTACACGCCGACCGGAAGTCATTCAGTTGCGACCTTTGCAACTTCAGGTGCCGAAAGTCATCTAacttgaaacggcacaagctGACGCACACCGACGAAAAGCCGTTCAATTGTGATCATTGCGATGCTAAATTCAAGGAAGCCAGTGCTTTGAAGCAACATGCGTTGAGACACACCGGCGGCGAGAAGTCTTTCAGTTGTCACATTTGCGATCACGTGAGCCTACGACCGCAACACTTGAAAGTGCACATGTTAACACACATTCCCAAACAGTAcggttgcgatctttgcgaataCAAGGGCCGCCATTCCGGGGCGTTAAGGAAGCACATGTTGACACACACCGATAAGAAGCCCTTCAAGTGTAACATATGCGGTTCGGAATTCAGTCAGAGCAAATATTTAAGGGCGCATTCATTGACGCATGCCGACGTGAAATCATTCAAGTGCAGCGTTTGCGATTACACGACCGAAACATCTGAGGAATTTGAGGCGCACATCTCGGCCCACGAGGTTGAAAAGCCGTTCAAATGCAACCTTTGTAAATATACGGGGAAAAAGCCGAGATATCTAAGGCAACACATGCTGGTGAAACATGAGAAACTGCTGAAGTGTAACATCTGCGGGTACACTTGTGGATTGGGGCAATGCCAGCAAACAACTAAATCTGGAATTCCCAGTGAATGCAAACTGAACACTCACGTCCTTCTACGAACACTGCTGtcgcacaccggcgagaatcCGCTCGAAACCCAAAATCGCGACAATTTGGAACGTCACGTCGATGAGAAACCATTCGGTTGCGATCTTTGCAAATTCAGATGCCGAAAATCATCAAACttgaagcagcacaagttaaCACATACCGGCGAAGAGCCGTTCCGTTGCAGTCTATGCGAGCACAAATACCTACGCGGCAGTAGCTTAAGAAagcacatgttaatacacaccggcgagcaACCGTTCAGTTGTAATCATTGCCAGGCTAAATTCAGAAACTCCAGGGCTTTGAAGCGACATACGCTGAGACACACCGACGGTGAGAAGCCACTGAGTTGTCATATTTGTGATTACGTAAGCCTACGACCGCAACACCTGAAAGTGCACATGTTAACACACACCGCTAAGCAGTatagttgtgacctttgcgcgTACAAGTGCCGTCAACCTGCTGTATTAAAGaagcacatgttaaaacacaccggtgaaaaatacttaaaatgtaATATCTGCCGATTGGAATTTAGCCAGAGCAGATATTTAAGGGCGCATTTATTGACGCATGCCGACGTGAGAACATTCAAATGCAGCCATTGCGGTTACACAACCAAAACACCTCAGGAATTGGAAGCGCACGTCTCAGTCCACGCGGTTGAAAAACCGTTCAAATGTAACCTCTGCAAATACGCGGGGAAAAAACCGAGCTATTTGAGGCAGCACATGTTGGTGAAACACGAGAAGCTGCTGAAGTGTACCATTTGTGGATGCCAACAGACAACCAAGTCAAGAATCGGCGAGAAACCGGTCGCCTGTGACGTTTGTGATTTCAAAACCCGCAATCGCTGCAATTTGAAGCGGCACATGCTGATACACACCGATGCGAAGCCgtacagttgtgatctttgcgacttTACGTGTCGAACTTCGACGAATCTGAGGCGGCACAAGTTCTCGCACATCGACGAAAAGCCGTTCCGTTGCAACCTATGCGAACACAAATACCTAAACGTCAAGAGCTTAAACAGGCACATGTTGACACACACCGACCAAGAGTCGTACAGGTGTAACCACTGCGCCGCTAAATTCCAAGCGTCCGGCAGTTTGAAGCGGCACATGTTGACACACACCGGCGGCGGGAAGTTATTCAGCTGTCACATCTGCGATTACGTGGGCCTACAATCGCAATACTTGAGCATGCACATGTTAGCGCACGCCCCCAAAGAGTATAGTTGTGATGTTTGCGAGTACAAGTGCCGTCAACCTGATAAACTAAAGGAACATATGATGCTACACAGTGGTGAAAAACACTTCAGGTGTAATTTCTGCGGTTCGGAATTTAGTCAGGATAAGTATTTAAAGGCGCACTTGTTAAGGCACGCCGACGTGAAGTCGTTCAAGTGCGGCCAGTGTGAGTATCAAAGCAGGACGTCTCAGGATTTGAGGGGACACATGGCGGTGCATTCGGTCGAAAATTCGTTTAAGTGTAAGCTTTGTACATATACAGGGAAATCTGCAAGATATTTGAGGCAACACATGACGTCGCACGAGAAATTGCTGAAGTGTAACGTTTGTGGGTACGCTTGTGGACTGTCGAGGCATTTGAAGAGGCACATGGCGAAACATGCCGGCGAGAATCCCCCCTAG
Protein Sequence: MSVHADRKSFSCDLCNFRCRKSSNLKRHKLTHTDEKPFNCDHCDAKFKEASALKQHALRHTGGEKSFSCHICDHVSLRPQHLKVHMLTHIPKQYGCDLCEYKGRHSGALRKHMLTHTDKKPFKCNICGSEFSQSKYLRAHSLTHADVKSFKCSVCDYTTETSEEFEAHISAHEVEKPFKCNLCKYTGKKPRYLRQHMLVKHEKLLKCNICGYTCGLGQCQQTTKSGIPSECKLNTHVLLRTLLSHTGENPLETQNRDNLERHVDEKPFGCDLCKFRCRKSSNLKQHKLTHTGEEPFRCSLCEHKYLRGSSLRKHMLIHTGEQPFSCNHCQAKFRNSRALKRHTLRHTDGEKPLSCHICDYVSLRPQHLKVHMLTHTAKQYSCDLCAYKCRQPAVLKKHMLKHTGEKYLKCNICRLEFSQSRYLRAHLLTHADVRTFKCSHCGYTTKTPQELEAHVSVHAVEKPFKCNLCKYAGKKPSYLRQHMLVKHEKLLKCTICGCQQTTKSRIGEKPVACDVCDFKTRNRCNLKRHMLIHTDAKPYSCDLCDFTCRTSTNLRRHKFSHIDEKPFRCNLCEHKYLNVKSLNRHMLTHTDQESYRCNHCAAKFQASGSLKRHMLTHTGGGKLFSCHICDYVGLQSQYLSMHMLAHAPKEYSCDVCEYKCRQPDKLKEHMMLHSGEKHFRCNFCGSEFSQDKYLKAHLLRHADVKSFKCGQCEYQSRTSQDLRGHMAVHSVENSFKCKLCTYTGKSARYLRQHMTSHEKLLKCNVCGYACGLSRHLKRHMAKHAGENPP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00465184;
90% Identity: iTF_00465184;
80% Identity: iTF_00465184;