Dhop036465.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus hopei
Gene Symbol
-
Assembly
GCA_033060865.1
Location
CM065425.1:73279686-73282468[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.001 0.12 14.4 6.1 1 23 10 32 10 32 0.98
2 26 0.00024 0.026 16.4 1.0 1 23 38 60 38 60 0.97
3 26 0.0068 0.75 11.9 4.3 1 23 67 89 67 89 0.98
4 26 0.0031 0.34 12.9 0.9 3 23 96 116 94 116 0.97
5 26 2.4e-05 0.0027 19.6 1.0 1 23 122 144 122 144 0.98
6 26 0.00049 0.054 15.5 0.2 1 23 150 172 150 172 0.97
7 26 0.0014 0.15 14.1 2.1 1 23 178 201 178 201 0.97
8 26 5.9 6.5e+02 2.6 1.0 2 10 206 214 205 216 0.88
9 26 0.024 2.6 10.2 5.2 3 23 270 290 268 290 0.98
10 26 0.04 4.5 9.4 2.6 1 23 296 318 296 318 0.98
11 26 0.00017 0.019 16.9 4.6 1 23 324 346 324 346 0.98
12 26 0.0026 0.29 13.2 1.9 2 23 354 375 353 375 0.97
13 26 0.0029 0.32 13.0 1.7 1 23 380 402 380 402 0.98
14 26 4.5e-05 0.005 18.7 0.8 2 23 409 430 408 430 0.97
15 26 2.4e-05 0.0026 19.6 0.8 1 23 436 458 436 458 0.98
16 26 0.00038 0.042 15.8 1.1 1 23 464 487 464 487 0.97
17 26 0.00073 0.081 14.9 2.8 3 23 513 533 512 533 0.97
18 26 0.0016 0.18 13.8 5.5 1 23 539 561 539 561 0.97
19 26 0.033 3.6 9.7 3.4 1 23 567 589 567 589 0.98
20 26 0.00045 0.049 15.6 1.8 1 23 595 617 595 617 0.99
21 26 0.15 16 7.6 0.6 1 23 624 646 624 646 0.95
22 26 0.00017 0.019 16.9 1.7 1 23 651 673 651 673 0.98
23 26 0.00047 0.052 15.5 1.4 1 23 679 701 679 701 0.98
24 26 0.004 0.44 12.6 0.4 1 23 707 729 707 729 0.98
25 26 0.002 0.23 13.5 2.6 1 23 735 757 735 757 0.98
26 26 0.00097 0.11 14.5 3.0 2 23 762 783 761 783 0.97

Sequence Information

Coding Sequence
ATGAGTGTACACGCCGACCGGAAGTCATTCAGTTGCGACCTTTGCAACTTCAGGTGCCGAAAGTCATCTAacttgaaacggcacaagctGACGCACACCGACGAAAAGCCGTTCAATTGTGATCATTGCGATGCTAAATTCAAGGAAGCCAGTGCTTTGAAGCAACATGCGTTGAGACACACCGGCGGCGAGAAGTCTTTCAGTTGTCACATTTGCGATCACGTGAGCCTACGACCGCAACACTTGAAAGTGCACATGTTAACACACATTCCCAAACAGTAcggttgcgatctttgcgaataCAAGGGCCGCCATTCCGGGGCGTTAAGGAAGCACATGTTGACACACACCGATAAGAAGCCCTTCAAGTGTAACATATGCGGTTCGGAATTCAGTCAGAGCAAATATTTAAGGGCGCATTCATTGACGCATGCCGACGTGAAATCATTCAAGTGCAGCGTTTGCGATTACACGACCGAAACATCTGAGGAATTTGAGGCGCACATCTCGGCCCACGAGGTTGAAAAGCCGTTCAAATGCAACCTTTGTAAATATACGGGGAAAAAGCCGAGATATCTAAGGCAACACATGCTGGTGAAACATGAGAAACTGCTGAAGTGTAACATCTGCGGGTACACTTGTGGATTGGGGCAATGCCAGCAAACAACTAAATCTGGAATTCCCAGTGAATGCAAACTGAACACTCACGTCCTTCTACGAACACTGCTGtcgcacaccggcgagaatcCGCTCGAAACCCAAAATCGCGACAATTTGGAACGTCACGTCGATGAGAAACCATTCGGTTGCGATCTTTGCAAATTCAGATGCCGAAAATCATCAAACttgaagcagcacaagttaaCACATACCGGCGAAGAGCCGTTCCGTTGCAGTCTATGCGAGCACAAATACCTACGCGGCAGTAGCTTAAGAAagcacatgttaatacacaccggcgagcaACCGTTCAGTTGTAATCATTGCCAGGCTAAATTCAGAAACTCCAGGGCTTTGAAGCGACATACGCTGAGACACACCGACGGTGAGAAGCCACTGAGTTGTCATATTTGTGATTACGTAAGCCTACGACCGCAACACCTGAAAGTGCACATGTTAACACACACCGCTAAGCAGTatagttgtgacctttgcgcgTACAAGTGCCGTCAACCTGCTGTATTAAAGaagcacatgttaaaacacaccggtgaaaaatacttaaaatgtaATATCTGCCGATTGGAATTTAGCCAGAGCAGATATTTAAGGGCGCATTTATTGACGCATGCCGACGTGAGAACATTCAAATGCAGCCATTGCGGTTACACAACCAAAACACCTCAGGAATTGGAAGCGCACGTCTCAGTCCACGCGGTTGAAAAACCGTTCAAATGTAACCTCTGCAAATACGCGGGGAAAAAACCGAGCTATTTGAGGCAGCACATGTTGGTGAAACACGAGAAGCTGCTGAAGTGTACCATTTGTGGATGCCAACAGACAACCAAGTCAAGAATCGGCGAGAAACCGGTCGCCTGTGACGTTTGTGATTTCAAAACCCGCAATCGCTGCAATTTGAAGCGGCACATGCTGATACACACCGATGCGAAGCCgtacagttgtgatctttgcgacttTACGTGTCGAACTTCGACGAATCTGAGGCGGCACAAGTTCTCGCACATCGACGAAAAGCCGTTCCGTTGCAACCTATGCGAACACAAATACCTAAACGTCAAGAGCTTAAACAGGCACATGTTGACACACACCGACCAAGAGTCGTACAGGTGTAACCACTGCGCCGCTAAATTCCAAGCGTCCGGCAGTTTGAAGCGGCACATGTTGACACACACCGGCGGCGGGAAGTTATTCAGCTGTCACATCTGCGATTACGTGGGCCTACAATCGCAATACTTGAGCATGCACATGTTAGCGCACGCCCCCAAAGAGTATAGTTGTGATGTTTGCGAGTACAAGTGCCGTCAACCTGATAAACTAAAGGAACATATGATGCTACACAGTGGTGAAAAACACTTCAGGTGTAATTTCTGCGGTTCGGAATTTAGTCAGGATAAGTATTTAAAGGCGCACTTGTTAAGGCACGCCGACGTGAAGTCGTTCAAGTGCGGCCAGTGTGAGTATCAAAGCAGGACGTCTCAGGATTTGAGGGGACACATGGCGGTGCATTCGGTCGAAAATTCGTTTAAGTGTAAGCTTTGTACATATACAGGGAAATCTGCAAGATATTTGAGGCAACACATGACGTCGCACGAGAAATTGCTGAAGTGTAACGTTTGTGGGTACGCTTGTGGACTGTCGAGGCATTTGAAGAGGCACATGGCGAAACATGCCGGCGAGAATCCCCCCTAG
Protein Sequence
MSVHADRKSFSCDLCNFRCRKSSNLKRHKLTHTDEKPFNCDHCDAKFKEASALKQHALRHTGGEKSFSCHICDHVSLRPQHLKVHMLTHIPKQYGCDLCEYKGRHSGALRKHMLTHTDKKPFKCNICGSEFSQSKYLRAHSLTHADVKSFKCSVCDYTTETSEEFEAHISAHEVEKPFKCNLCKYTGKKPRYLRQHMLVKHEKLLKCNICGYTCGLGQCQQTTKSGIPSECKLNTHVLLRTLLSHTGENPLETQNRDNLERHVDEKPFGCDLCKFRCRKSSNLKQHKLTHTGEEPFRCSLCEHKYLRGSSLRKHMLIHTGEQPFSCNHCQAKFRNSRALKRHTLRHTDGEKPLSCHICDYVSLRPQHLKVHMLTHTAKQYSCDLCAYKCRQPAVLKKHMLKHTGEKYLKCNICRLEFSQSRYLRAHLLTHADVRTFKCSHCGYTTKTPQELEAHVSVHAVEKPFKCNLCKYAGKKPSYLRQHMLVKHEKLLKCTICGCQQTTKSRIGEKPVACDVCDFKTRNRCNLKRHMLIHTDAKPYSCDLCDFTCRTSTNLRRHKFSHIDEKPFRCNLCEHKYLNVKSLNRHMLTHTDQESYRCNHCAAKFQASGSLKRHMLTHTGGGKLFSCHICDYVGLQSQYLSMHMLAHAPKEYSCDVCEYKCRQPDKLKEHMMLHSGEKHFRCNFCGSEFSQDKYLKAHLLRHADVKSFKCGQCEYQSRTSQDLRGHMAVHSVENSFKCKLCTYTGKSARYLRQHMTSHEKLLKCNVCGYACGLSRHLKRHMAKHAGENPP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00465620;
90% Identity
iTF_00465620;
80% Identity
iTF_00465620;