Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065425.1:72678301-72679821[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.18 2.5e+02 3.4 0.0 21 44 9 32 7 39 0.89

2 16 0.04 55 5.5 0.2 20 44 64 88 62 97 0.89

3 16 0.0075 10 7.8 0.1 26 44 98 116 92 121 0.89

4 16 0.086 1.2e+02 4.4 0.6 21 45 121 145 119 151 0.90

5 16 5.3 7.3e+03 -1.3 0.1 21 44 155 178 146 186 0.76

6 16 0.82 1.1e+03 1.3 0.1 22 44 184 206 170 210 0.83

7 16 0.055 76 5.0 0.0 21 46 211 236 208 243 0.89

8 16 1.9 2.6e+03 0.1 0.4 27 44 248 265 241 272 0.74

9 16 0.0044 6.2 8.5 0.1 22 44 271 293 267 298 0.89

10 16 0.075 1e+02 4.6 0.5 21 45 298 322 294 329 0.90

11 16 0.24 3.3e+02 3.0 0.3 21 44 332 355 323 363 0.85

12 16 0.63 8.7e+02 1.7 0.0 22 46 361 385 357 391 0.83

13 16 0.06 83 4.9 0.0 21 46 388 413 386 419 0.90

14 16 0.0062 8.6 8.1 0.3 21 44 422 445 413 452 0.88

15 16 0.042 58 5.4 0.1 26 49 455 477 447 481 0.86

16 16 0.093 1.3e+02 4.3 0.1 18 48 475 505 474 506 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.18	2.5e+02	3.4	0.0	21	44	9	32	7	39	0.89
2	16	0.04	55	5.5	0.2	20	44	64	88	62	97	0.89
3	16	0.0075	10	7.8	0.1	26	44	98	116	92	121	0.89
4	16	0.086	1.2e+02	4.4	0.6	21	45	121	145	119	151	0.90
5	16	5.3	7.3e+03	-1.3	0.1	21	44	155	178	146	186	0.76
6	16	0.82	1.1e+03	1.3	0.1	22	44	184	206	170	210	0.83
7	16	0.055	76	5.0	0.0	21	46	211	236	208	243	0.89
8	16	1.9	2.6e+03	0.1	0.4	27	44	248	265	241	272	0.74
9	16	0.0044	6.2	8.5	0.1	22	44	271	293	267	298	0.89
10	16	0.075	1e+02	4.6	0.5	21	45	298	322	294	329	0.90
11	16	0.24	3.3e+02	3.0	0.3	21	44	332	355	323	363	0.85
12	16	0.63	8.7e+02	1.7	0.0	22	46	361	385	357	391	0.83
13	16	0.06	83	4.9	0.0	21	46	388	413	386	419	0.90
14	16	0.0062	8.6	8.1	0.3	21	44	422	445	413	452	0.88
15	16	0.042	58	5.4	0.1	26	49	455	477	447	481	0.86
16	16	0.093	1.3e+02	4.3	0.1	18	48	475	505	474	506	0.88

Sequence Information

Coding Sequence: ATGGATCATATcttaatacacaccggcgagaagccataCAGTTGTGATCTGTGCAATTTTAGCACCCGAAAGAATAGTTCTTTGAAGAAGCACTTCTTAACACACGATAAGAAAAAGACGTTGAGTTGTGAATTTTGTGATTTCAAATGCCGAGATCTTACTAGCTTAATCCAACACGATCTACTAACTCACTCCGACAATCCGATAAGTtgcggtctttgcgattataaatgtcgacaaCGCAGGCTTTTTAAACAACACATGCTAACACACACCGACGTTAAAACGTTCAACTGCAACCTCTGCGATTCGAGATTCAGGCAGTCCGCTGATCTGAAGCGTCATATGTTagtacacaccggcgagaagccgttcagttgtagtTTATGCACGCACCGGTGTCGAGTTAAGCAAGAGTTGAACAGGCACATGAAAACCCATGTTGATAAAAAATACCGAAATACTGAAAAATCGATTAGTTGCAGTCTATGCGATTTTAAGTGCGGAACACCGGGTGGTTTAAGGCGGCACGTTTTAACCCATTCCGACAAGAGGCCGTACAATTGCAAGCTGTGCGACTCCGCATTCAAAATATCCGCTCATCTGAAGCATCatatgttaatacacaccggcgagaagccattcagttgtagTTTATGTACGCACAAGAGTCGATCTAACGgagatttgaaaaaacacaTGGAAACCCACATTGATAAAAAATGCCGAAATACTGAAAAATGCAGTCTTTGCGATTTTAAGTGCGGCAGATTACCAAATTTAAGACGACACATGTTAACGCATTCCGACAAGAGGCCGTATAGTTGCAAGCTTTGCGATTCCGCATTCAGACAAGCTGGTCACTTGAAGCGTCATATGGTagtacacaccggcgagaagccgttcagttgtagtTTATGCACGCACCGGTGTCGAGTTAAGCAAGAGTTGAACAGGCACATGAAAACCCATGTTGATAAAAAATACCGAAATACTGAAAAATCGATTAGTTGCAGTCTATGCGATTTTAAGTGCAGAACACCGGGTAGTTTAAGGCGGCACGTTTTAACCCATTCCGACAAGAGGCCGTACAATTGCAAGCTGTGCGACTCCGCATTCAAAATATCCGCTCATCTGAAGCATCatatgttaatacacaccggcgagaagccattcagttgtagTTTATGTACGCACAAGAGTCGATCTAACGGAGATTTGAAGAAACACATGGAAACCCACATTGATAAAAAATACCGAAATACTGAAAAATCGATTAGTTGCAGTCTATGCGATTTTAAGTGCAGAGCATCGAATAATTTAAGACAGCACATGTTAACCCATTCCGACGTTAAAGCGTTCAGCTGTAACCTCTGCGATTCGAAATTCAGGCAGTCCGGTCATTTGAAGGTACATATGTTGagacataccggcgagaagccctACAGTTGTGATTCTTGCGATTACAGGAGCCGGACTAGCGGAGATCTGAAAAAGCACGTCAAACGACATCATTCGTAA
Protein Sequence: MDHILIHTGEKPYSCDLCNFSTRKNSSLKKHFLTHDKKKTLSCEFCDFKCRDLTSLIQHDLLTHSDNPISCGLCDYKCRQRRLFKQHMLTHTDVKTFNCNLCDSRFRQSADLKRHMLVHTGEKPFSCSLCTHRCRVKQELNRHMKTHVDKKYRNTEKSISCSLCDFKCGTPGGLRRHVLTHSDKRPYNCKLCDSAFKISAHLKHHMLIHTGEKPFSCSLCTHKSRSNGDLKKHMETHIDKKCRNTEKCSLCDFKCGRLPNLRRHMLTHSDKRPYSCKLCDSAFRQAGHLKRHMVVHTGEKPFSCSLCTHRCRVKQELNRHMKTHVDKKYRNTEKSISCSLCDFKCRTPGSLRRHVLTHSDKRPYNCKLCDSAFKISAHLKHHMLIHTGEKPFSCSLCTHKSRSNGDLKKHMETHIDKKYRNTEKSISCSLCDFKCRASNNLRQHMLTHSDVKAFSCNLCDSKFRQSGHLKVHMLRHTGEKPYSCDSCDYRSRTSGDLKKHVKRHHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00465216;
90% Identity: iTF_00465216;
80% Identity: iTF_00465216;