Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065425.1:72678301-72679821[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00055 0.061 15.3 3.3 1 23 13 35 13 35 0.98

2 17 0.56 63 5.8 1.6 2 19 42 59 41 64 0.94

3 17 0.002 0.22 13.5 3.5 2 23 70 91 69 91 0.97

4 17 4.5e-06 0.0005 21.9 0.8 1 23 97 119 97 119 0.97

5 17 0.0031 0.34 12.9 6.9 1 23 125 147 125 147 0.98

6 17 0.0027 0.3 13.1 0.6 2 23 160 181 159 181 0.97

7 17 0.00039 0.043 15.8 2.9 1 23 187 209 187 209 0.98

8 17 0.0006 0.067 15.2 3.3 1 23 215 237 215 237 0.98

9 17 0.00087 0.096 14.7 3.0 2 23 247 268 247 268 0.98

10 17 6.2e-06 0.00068 21.4 1.0 1 23 274 296 274 296 0.97

11 17 0.0031 0.34 12.9 6.9 1 23 302 324 302 324 0.98

12 17 0.00028 0.031 16.2 1.7 2 23 337 358 336 358 0.97

13 17 0.00039 0.043 15.8 2.9 1 23 364 386 364 386 0.98

14 17 0.0006 0.067 15.2 3.3 1 23 392 414 392 414 0.98

15 17 0.0019 0.21 13.6 2.6 2 23 427 448 426 448 0.97

16 17 1.8e-05 0.002 19.9 2.9 1 23 454 476 454 476 0.98

17 17 0.00038 0.042 15.8 3.2 1 23 482 504 482 505 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00055	0.061	15.3	3.3	1	23	13	35	13	35	0.98
2	17	0.56	63	5.8	1.6	2	19	42	59	41	64	0.94
3	17	0.002	0.22	13.5	3.5	2	23	70	91	69	91	0.97
4	17	4.5e-06	0.0005	21.9	0.8	1	23	97	119	97	119	0.97
5	17	0.0031	0.34	12.9	6.9	1	23	125	147	125	147	0.98
6	17	0.0027	0.3	13.1	0.6	2	23	160	181	159	181	0.97
7	17	0.00039	0.043	15.8	2.9	1	23	187	209	187	209	0.98
8	17	0.0006	0.067	15.2	3.3	1	23	215	237	215	237	0.98
9	17	0.00087	0.096	14.7	3.0	2	23	247	268	247	268	0.98
10	17	6.2e-06	0.00068	21.4	1.0	1	23	274	296	274	296	0.97
11	17	0.0031	0.34	12.9	6.9	1	23	302	324	302	324	0.98
12	17	0.00028	0.031	16.2	1.7	2	23	337	358	336	358	0.97
13	17	0.00039	0.043	15.8	2.9	1	23	364	386	364	386	0.98
14	17	0.0006	0.067	15.2	3.3	1	23	392	414	392	414	0.98
15	17	0.0019	0.21	13.6	2.6	2	23	427	448	426	448	0.97
16	17	1.8e-05	0.002	19.9	2.9	1	23	454	476	454	476	0.98
17	17	0.00038	0.042	15.8	3.2	1	23	482	504	482	505	0.96

Sequence Information

Coding Sequence: ATGGATCATATcttaatacacaccggcgagaagccataCAGTTGTGATCTGTGCAATTTTAGCACCCGAAAGAATAGTTCTTTGAAGAAGCACTTCTTAACACACGATAAGAAAAAGACGTTGAGTTGTGAATTTTGTGATTTCAAATGCCGAGATCTTACTAGCTTAATCCAACACGATCTACTAACTCACTCCGACAATCCGATAAGTtgcggtctttgcgattataaatgtcgacaaCGCAGGCTTTTTAAACAACACATGCTAACACACACCGACGTTAAAACGTTCAACTGCAACCTCTGCGATTCGAGATTCAGGCAGTCCGCTGATCTGAAGCGTCATATGTTagtacacaccggcgagaagccgttcagttgtagtTTATGCACGCACCGGTGTCGAGTTAAGCAAGAGTTGAACAGGCACATGAAAACCCATGTTGATAAAAAATACCGAAATACTGAAAAATCGATTAGTTGCAGTCTATGCGATTTTAAGTGCGGAACACCGGGTGGTTTAAGGCGGCACGTTTTAACCCATTCCGACAAGAGGCCGTACAATTGCAAGCTGTGCGACTCCGCATTCAAAATATCCGCTCATCTGAAGCATCatatgttaatacacaccggcgagaagccattcagttgtagTTTATGTACGCACAAGAGTCGATCTAACGgagatttgaaaaaacacaTGGAAACCCACATTGATAAAAAATGCCGAAATACTGAAAAATGCAGTCTTTGCGATTTTAAGTGCGGCAGATTACCAAATTTAAGACGACACATGTTAACGCATTCCGACAAGAGGCCGTATAGTTGCAAGCTTTGCGATTCCGCATTCAGACAAGCTGGTCACTTGAAGCGTCATATGGTagtacacaccggcgagaagccgttcagttgtagtTTATGCACGCACCGGTGTCGAGTTAAGCAAGAGTTGAACAGGCACATGAAAACCCATGTTGATAAAAAATACCGAAATACTGAAAAATCGATTAGTTGCAGTCTATGCGATTTTAAGTGCAGAACACCGGGTAGTTTAAGGCGGCACGTTTTAACCCATTCCGACAAGAGGCCGTACAATTGCAAGCTGTGCGACTCCGCATTCAAAATATCCGCTCATCTGAAGCATCatatgttaatacacaccggcgagaagccattcagttgtagTTTATGTACGCACAAGAGTCGATCTAACGGAGATTTGAAGAAACACATGGAAACCCACATTGATAAAAAATACCGAAATACTGAAAAATCGATTAGTTGCAGTCTATGCGATTTTAAGTGCAGAGCATCGAATAATTTAAGACAGCACATGTTAACCCATTCCGACGTTAAAGCGTTCAGCTGTAACCTCTGCGATTCGAAATTCAGGCAGTCCGGTCATTTGAAGGTACATATGTTGagacataccggcgagaagccctACAGTTGTGATTCTTGCGATTACAGGAGCCGGACTAGCGGAGATCTGAAAAAGCACGTCAAACGACATCATTCGTAA
Protein Sequence: MDHILIHTGEKPYSCDLCNFSTRKNSSLKKHFLTHDKKKTLSCEFCDFKCRDLTSLIQHDLLTHSDNPISCGLCDYKCRQRRLFKQHMLTHTDVKTFNCNLCDSRFRQSADLKRHMLVHTGEKPFSCSLCTHRCRVKQELNRHMKTHVDKKYRNTEKSISCSLCDFKCGTPGGLRRHVLTHSDKRPYNCKLCDSAFKISAHLKHHMLIHTGEKPFSCSLCTHKSRSNGDLKKHMETHIDKKCRNTEKCSLCDFKCGRLPNLRRHMLTHSDKRPYSCKLCDSAFRQAGHLKRHMVVHTGEKPFSCSLCTHRCRVKQELNRHMKTHVDKKYRNTEKSISCSLCDFKCRTPGSLRRHVLTHSDKRPYNCKLCDSAFKISAHLKHHMLIHTGEKPFSCSLCTHKSRSNGDLKKHMETHIDKKYRNTEKSISCSLCDFKCRASNNLRQHMLTHSDVKAFSCNLCDSKFRQSGHLKVHMLRHTGEKPYSCDSCDYRSRTSGDLKKHVKRHHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00465616;
90% Identity: iTF_00465616;
80% Identity: iTF_00465616;