Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065425.1:72691077-72699615[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.91 1.3e+03 1.1 0.0 21 46 10 35 7 41 0.83

2 17 0.32 4.5e+02 2.6 0.1 21 46 38 63 35 69 0.89

3 17 2.5 3.5e+03 -0.3 0.0 22 44 67 89 63 97 0.82

4 17 0.3 4.2e+02 2.7 0.1 23 48 96 120 91 126 0.84

5 17 3 4.1e+03 -0.5 0.1 23 48 124 148 117 153 0.83

6 17 0.074 1e+02 4.6 0.0 21 51 150 180 144 181 0.87

7 17 0.11 1.5e+02 4.1 0.1 21 44 178 201 176 209 0.89

8 17 0.012 16 7.2 0.3 23 44 236 257 226 265 0.87

9 17 0.47 6.5e+02 2.1 0.1 22 43 263 284 258 288 0.85

10 17 3.4 4.7e+03 -0.7 0.1 26 43 299 316 295 322 0.89

11 17 0.0011 1.5 10.5 0.1 21 44 322 345 319 352 0.88

12 17 9.3 1.3e+04 -2.1 0.1 22 44 428 450 426 458 0.79

13 17 0.24 3.4e+02 3.0 0.0 23 43 457 477 452 484 0.89

14 17 0.0014 2 10.1 0.0 21 45 483 507 480 515 0.90

15 17 0.0021 3 9.6 0.0 21 52 517 548 510 549 0.89

16 17 0.00065 0.9 11.2 0.1 23 44 547 568 544 573 0.89

17 17 0.00056 0.78 11.4 0.2 21 48 573 600 570 601 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.91	1.3e+03	1.1	0.0	21	46	10	35	7	41	0.83
2	17	0.32	4.5e+02	2.6	0.1	21	46	38	63	35	69	0.89
3	17	2.5	3.5e+03	-0.3	0.0	22	44	67	89	63	97	0.82
4	17	0.3	4.2e+02	2.7	0.1	23	48	96	120	91	126	0.84
5	17	3	4.1e+03	-0.5	0.1	23	48	124	148	117	153	0.83
6	17	0.074	1e+02	4.6	0.0	21	51	150	180	144	181	0.87
7	17	0.11	1.5e+02	4.1	0.1	21	44	178	201	176	209	0.89
8	17	0.012	16	7.2	0.3	23	44	236	257	226	265	0.87
9	17	0.47	6.5e+02	2.1	0.1	22	43	263	284	258	288	0.85
10	17	3.4	4.7e+03	-0.7	0.1	26	43	299	316	295	322	0.89
11	17	0.0011	1.5	10.5	0.1	21	44	322	345	319	352	0.88
12	17	9.3	1.3e+04	-2.1	0.1	22	44	428	450	426	458	0.79
13	17	0.24	3.4e+02	3.0	0.0	23	43	457	477	452	484	0.89
14	17	0.0014	2	10.1	0.0	21	45	483	507	480	515	0.90
15	17	0.0021	3	9.6	0.0	21	52	517	548	510	549	0.89
16	17	0.00065	0.9	11.2	0.1	23	44	547	568	544	573	0.89
17	17	0.00056	0.78	11.4	0.2	21	48	573	600	570	601	0.94

Sequence Information

Coding Sequence: ATGAAACGGCACAAGctaatacacaccgacgagaagccctTCAGTTGCAATTTTTGCGACTACAAATGTCGACAGAAAGTAACCTTGATGGACCACATattaatacacaccggcgagaaaccgtacAGTTGTGACTTTTGCAATTACACTTGCCGGACGAACACATCCCTGAAGCAGCACGTAACAATGCACACCGGTGAAAAATCCTACAGTTGCAAGATTTGCGGCTCGAGATTTAGACTGTCCGGTTTATTGAGTCAGCACATGTTTACGCATACCCgcaagaagccgttcagttgtgatttgTGCGATCGAAAGTGTCGGTCACGCGGAGATTTGAAGCGGCACATGTTGAAACACACCGGCgtgaagccgtttagttgtaatctttgcgattaccaCTGCCAAGAACGCAGGCAGTTGAATGTTCACTTGCTGAAGCACACCGgagagaaaccgttcagttgtgatttcTGTGATTTTAAATGTCGGGAGCAAAAGGGTTTGAAGAACCACTTGTTATTACATACCGGCGAAAAACCCTTCAATTGTGATGTCTGCGATAAGAAGTGTCGATCTCGCGGAGAGTTGAAGCGACACATCCTAATACACACCGACGTAGAGCCccttagttgtgatctttgcgatttcaGATGCCGAGATCCCTCTGATATGAAAGGGCACAAGTTAACTCATGTCGACGGAAAACCGATCAGTTGTGGCCTTTGCCATTTTAAGTGCAGGAAACCATCGAATTTGAGACAGCACATGTTAACACATTCTGACAAGAAGCCATTCAGATGCGTCCTTTGCGATTCTAGATTCAGACAGTCTGGGCATTTGAAACATTATATAAACGACCAAGATCCTTTATGCACCGGAGCAAAGTTGATCACTTGCGATAGttgtgattataaatgtcgCGATTCCTTCAAgatgaaacggcacaagttcatacacaccggcgagaaaccgtatAGTTGTGGCCTTTGCCATTATACTACCGGAAGGAGTAGCAATTTGAAAAGGCACTTGTTAACACATACCGAGAAAGAAACCTCGAGTTGCGATCAGAAGCTTCGACTTAGCGCAGATTTGTCGAATAAAGCCGACGGGAAGTTGTTCACTtgcggtctttgcgattacgaAGGGCGAGATCGCGAAGAGTTGAATCTGCATATATTATTACACTTTGACAGGAAATCTCTGAGTTGTGATGCTTGCGATTTCAAATGCCGAGATGAGatcgttttaaaaaatcacaagtTAGCTCACACCGTCGAGGCACCGTTGATTTGCggcctttgcgattataaatgccgactgCGCACGGTTCTGAAACAGCACATGCTGACACACACCGACGTTAAGCCGTTCAGTTGCAACCTTTGCGATTCCAAATTCAGGCAGAAAGGTCATCTGAGAGTCCACAAGTTAATACATACTGGCGAGAAGCCACACACTTGCAGCTTATGCGACCACAAGTCTCGATCTAGCGGAGATTTGAAGAAACACATGGAAAGCCACCTTGACAAAAAATACCGAAACACTGAAAAAACGGCCGGTTGCGGTCTTTGCGACTTGAAGTTCAAAAGATTGACGAATTTAAGACGGCACATGTTGACACATACCAACGCAAAGCCATACAGTTGCGAGATTTGCCATTCCGCGTTCAGACAGTCCGGGCACTTGAAGCAGCATATGTTGATACACactggcgagaagccgttcacttgtgattcttgcgattacaagtgccgaTCTAACGGAGACTTGAGAAGGCACGTCAAAGCACgtcattcttaa
Protein Sequence: MKRHKLIHTDEKPFSCNFCDYKCRQKVTLMDHILIHTGEKPYSCDFCNYTCRTNTSLKQHVTMHTGEKSYSCKICGSRFRLSGLLSQHMFTHTRKKPFSCDLCDRKCRSRGDLKRHMLKHTGVKPFSCNLCDYHCQERRQLNVHLLKHTGEKPFSCDFCDFKCREQKGLKNHLLLHTGEKPFNCDVCDKKCRSRGELKRHILIHTDVEPLSCDLCDFRCRDPSDMKGHKLTHVDGKPISCGLCHFKCRKPSNLRQHMLTHSDKKPFRCVLCDSRFRQSGHLKHYINDQDPLCTGAKLITCDSCDYKCRDSFKMKRHKFIHTGEKPYSCGLCHYTTGRSSNLKRHLLTHTEKETSSCDQKLRLSADLSNKADGKLFTCGLCDYEGRDREELNLHILLHFDRKSLSCDACDFKCRDEIVLKNHKLAHTVEAPLICGLCDYKCRLRTVLKQHMLTHTDVKPFSCNLCDSKFRQKGHLRVHKLIHTGEKPHTCSLCDHKSRSSGDLKKHMESHLDKKYRNTEKTAGCGLCDLKFKRLTNLRRHMLTHTNAKPYSCEICHSAFRQSGHLKQHMLIHTGEKPFTCDSCDYKCRSNGDLRRHVKARHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00465211;
90% Identity: iTF_00465211;
80% Identity: iTF_00465211;