Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065425.1:72691077-72699615[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00086 0.095 14.7 2.7 1 23 14 36 14 36 0.98

2 20 0.0017 0.19 13.7 4.8 1 23 42 64 42 64 0.98

3 20 0.00012 0.013 17.4 1.0 1 23 70 92 70 92 0.98

4 20 2.2e-05 0.0025 19.7 3.6 1 23 98 120 98 120 0.98

5 20 0.088 9.8 8.3 5.0 1 23 126 148 126 148 0.98

6 20 0.026 2.9 10.0 3.5 1 23 154 176 154 176 0.97

7 20 9.3e-06 0.001 20.9 1.8 1 23 182 204 182 204 0.97

8 20 0.013 1.4 11.0 1.6 2 23 211 232 210 232 0.96

9 20 0.00072 0.08 14.9 4.7 2 23 239 260 238 260 0.97

10 20 0.075 8.3 8.6 0.7 1 18 266 283 266 283 0.94

11 20 0.36 40 6.4 4.5 2 23 299 320 298 320 0.95

12 20 3.8e-05 0.0042 19.0 2.7 1 23 326 348 326 348 0.98

13 20 0.0057 0.63 12.1 0.1 1 23 375 397 375 397 0.97

14 20 3.6 3.9e+02 3.3 0.9 2 23 404 425 403 425 0.92

15 20 0.026 2.9 10.0 1.7 2 23 432 453 431 453 0.96

16 20 0.00022 0.024 16.6 2.9 1 23 459 481 459 481 0.97

17 20 0.00097 0.11 14.5 4.3 1 23 487 509 487 509 0.97

18 20 1.7e-05 0.0019 20.0 1.8 3 23 523 543 523 543 0.99

19 20 1.1e-05 0.0012 20.6 2.7 1 23 549 571 549 571 0.98

20 20 0.0008 0.088 14.8 2.8 1 23 577 600 577 600 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00086	0.095	14.7	2.7	1	23	14	36	14	36	0.98
2	20	0.0017	0.19	13.7	4.8	1	23	42	64	42	64	0.98
3	20	0.00012	0.013	17.4	1.0	1	23	70	92	70	92	0.98
4	20	2.2e-05	0.0025	19.7	3.6	1	23	98	120	98	120	0.98
5	20	0.088	9.8	8.3	5.0	1	23	126	148	126	148	0.98
6	20	0.026	2.9	10.0	3.5	1	23	154	176	154	176	0.97
7	20	9.3e-06	0.001	20.9	1.8	1	23	182	204	182	204	0.97
8	20	0.013	1.4	11.0	1.6	2	23	211	232	210	232	0.96
9	20	0.00072	0.08	14.9	4.7	2	23	239	260	238	260	0.97
10	20	0.075	8.3	8.6	0.7	1	18	266	283	266	283	0.94
11	20	0.36	40	6.4	4.5	2	23	299	320	298	320	0.95
12	20	3.8e-05	0.0042	19.0	2.7	1	23	326	348	326	348	0.98
13	20	0.0057	0.63	12.1	0.1	1	23	375	397	375	397	0.97
14	20	3.6	3.9e+02	3.3	0.9	2	23	404	425	403	425	0.92
15	20	0.026	2.9	10.0	1.7	2	23	432	453	431	453	0.96
16	20	0.00022	0.024	16.6	2.9	1	23	459	481	459	481	0.97
17	20	0.00097	0.11	14.5	4.3	1	23	487	509	487	509	0.97
18	20	1.7e-05	0.0019	20.0	1.8	3	23	523	543	523	543	0.99
19	20	1.1e-05	0.0012	20.6	2.7	1	23	549	571	549	571	0.98
20	20	0.0008	0.088	14.8	2.8	1	23	577	600	577	600	0.95

Sequence Information

Coding Sequence: ATGAAACGGCACAAGctaatacacaccgacgagaagccctTCAGTTGCAATTTTTGCGACTACAAATGTCGACAGAAAGTAACCTTGATGGACCACATattaatacacaccggcgagaaaccgtacAGTTGTGACTTTTGCAATTACACTTGCCGGACGAACACATCCCTGAAGCAGCACGTAACAATGCACACCGGTGAAAAATCCTACAGTTGCAAGATTTGCGGCTCGAGATTTAGACTGTCCGGTTTATTGAGTCAGCACATGTTTACGCATACCCgcaagaagccgttcagttgtgatttgTGCGATCGAAAGTGTCGGTCACGCGGAGATTTGAAGCGGCACATGTTGAAACACACCGGCgtgaagccgtttagttgtaatctttgcgattaccaCTGCCAAGAACGCAGGCAGTTGAATGTTCACTTGCTGAAGCACACCGgagagaaaccgttcagttgtgatttcTGTGATTTTAAATGTCGGGAGCAAAAGGGTTTGAAGAACCACTTGTTATTACATACCGGCGAAAAACCCTTCAATTGTGATGTCTGCGATAAGAAGTGTCGATCTCGCGGAGAGTTGAAGCGACACATCCTAATACACACCGACGTAGAGCCccttagttgtgatctttgcgatttcaGATGCCGAGATCCCTCTGATATGAAAGGGCACAAGTTAACTCATGTCGACGGAAAACCGATCAGTTGTGGCCTTTGCCATTTTAAGTGCAGGAAACCATCGAATTTGAGACAGCACATGTTAACACATTCTGACAAGAAGCCATTCAGATGCGTCCTTTGCGATTCTAGATTCAGACAGTCTGGGCATTTGAAACATTATATAAACGACCAAGATCCTTTATGCACCGGAGCAAAGTTGATCACTTGCGATAGttgtgattataaatgtcgCGATTCCTTCAAgatgaaacggcacaagttcatacacaccggcgagaaaccgtatAGTTGTGGCCTTTGCCATTATACTACCGGAAGGAGTAGCAATTTGAAAAGGCACTTGTTAACACATACCGAGAAAGAAACCTCGAGTTGCGATCAGAAGCTTCGACTTAGCGCAGATTTGTCGAATAAAGCCGACGGGAAGTTGTTCACTtgcggtctttgcgattacgaAGGGCGAGATCGCGAAGAGTTGAATCTGCATATATTATTACACTTTGACAGGAAATCTCTGAGTTGTGATGCTTGCGATTTCAAATGCCGAGATGAGatcgttttaaaaaatcacaagtTAGCTCACACCGTCGAGGCACCGTTGATTTGCggcctttgcgattataaatgccgactgCGCACGGTTCTGAAACAGCACATGCTGACACACACCGACGTTAAGCCGTTCAGTTGCAACCTTTGCGATTCCAAATTCAGGCAGAAAGGTCATCTGAGAGTCCACAAGTTAATACATACTGGCGAGAAGCCACACACTTGCAGCTTATGCGACCACAAGTCTCGATCTAGCGGAGATTTGAAGAAACACATGGAAAGCCACCTTGACAAAAAATACCGAAACACTGAAAAAACGGCCGGTTGCGGTCTTTGCGACTTGAAGTTCAAAAGATTGACGAATTTAAGACGGCACATGTTGACACATACCAACGCAAAGCCATACAGTTGCGAGATTTGCCATTCCGCGTTCAGACAGTCCGGGCACTTGAAGCAGCATATGTTGATACACactggcgagaagccgttcacttgtgattcttgcgattacaagtgccgaTCTAACGGAGACTTGAGAAGGCACGTCAAAGCACgtcattcttaa
Protein Sequence: MKRHKLIHTDEKPFSCNFCDYKCRQKVTLMDHILIHTGEKPYSCDFCNYTCRTNTSLKQHVTMHTGEKSYSCKICGSRFRLSGLLSQHMFTHTRKKPFSCDLCDRKCRSRGDLKRHMLKHTGVKPFSCNLCDYHCQERRQLNVHLLKHTGEKPFSCDFCDFKCREQKGLKNHLLLHTGEKPFNCDVCDKKCRSRGELKRHILIHTDVEPLSCDLCDFRCRDPSDMKGHKLTHVDGKPISCGLCHFKCRKPSNLRQHMLTHSDKKPFRCVLCDSRFRQSGHLKHYINDQDPLCTGAKLITCDSCDYKCRDSFKMKRHKFIHTGEKPYSCGLCHYTTGRSSNLKRHLLTHTEKETSSCDQKLRLSADLSNKADGKLFTCGLCDYEGRDREELNLHILLHFDRKSLSCDACDFKCRDEIVLKNHKLAHTVEAPLICGLCDYKCRLRTVLKQHMLTHTDVKPFSCNLCDSKFRQKGHLRVHKLIHTGEKPHTCSLCDHKSRSSGDLKKHMESHLDKKYRNTEKTAGCGLCDLKFKRLTNLRRHMLTHTNAKPYSCEICHSAFRQSGHLKQHMLIHTGEKPFTCDSCDYKCRSNGDLRRHVKARHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00465607;
90% Identity: iTF_00465607;
80% Identity: iTF_00465607;