Dhop029338.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- -
- Assembly
- GCA_033060865.1
- Location
- CM065424.1:55385727-55399195[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.01 1.1 11.3 1.0 2 23 191 213 190 213 0.96 2 21 1.3 1.4e+02 4.7 0.6 1 19 349 367 349 370 0.88 3 21 3.3 3.6e+02 3.4 0.1 6 20 432 446 430 448 0.92 4 21 1.8 2e+02 4.2 3.5 1 19 454 472 454 477 0.91 5 21 4.1e-06 0.00046 22.0 1.1 3 23 544 564 542 564 0.96 6 21 1.2e-05 0.0014 20.5 1.6 2 23 579 600 578 600 0.97 7 21 1.3 1.4e+02 4.7 0.1 2 23 608 630 607 630 0.92 8 21 0.0035 0.38 12.8 0.1 2 23 635 656 635 656 0.96 9 21 2.9e-05 0.0032 19.3 0.2 2 23 679 700 678 700 0.97 10 21 0.0067 0.74 11.9 3.3 1 23 721 743 721 744 0.95 11 21 0.019 2.1 10.5 0.9 1 23 755 777 755 777 0.98 12 21 2e-05 0.0022 19.8 8.7 1 23 802 824 802 824 0.98 13 21 2.8 3.1e+02 3.6 3.8 3 23 846 866 844 866 0.96 14 21 0.0024 0.27 13.3 0.2 1 23 893 915 893 915 0.97 15 21 0.096 11 8.2 0.1 2 23 929 951 928 951 0.95 16 21 0.00032 0.036 16.0 0.4 1 23 968 990 968 990 0.95 17 21 3.5 3.9e+02 3.3 0.2 1 23 1024 1047 1024 1047 0.93 18 21 0.0047 0.52 12.4 0.5 2 23 1058 1079 1058 1079 0.97 19 21 2.6e-06 0.00029 22.6 1.3 1 23 1088 1111 1088 1111 0.97 20 21 7.4e-05 0.0082 18.0 3.7 1 23 1119 1141 1119 1141 0.98 21 21 0.00081 0.09 14.8 0.4 1 23 1159 1182 1159 1182 0.98
Sequence Information
- Coding Sequence
- ATGGCAGAAGGAAGATCTGCAAATTACAGTTCCTGTTGCCGACTCTGCTTGTCGGATAAGTACAATACAttgaagccaatatttgaagaTGAAGCGGATAGTCGGGCATTATCCCAAAAGATCTTGCATCTCCTGGGAGTTGAGGTATCCTCCAATGACAAATTGTCCACCCTGATATGTACTGGGTGTTTAATCCAAGTAAACAATTGGGATAGTTTTAAGAAAGAATGTTCAGAAAACCAAATGAAACTTCAAGAATGGATGAGTCTTTGGATTGCAAGTGGATCTGACATAGGGAATAtgAGCATACAAATTAAAGACGAGCCAGTTGATCATGAAGAGAATCAAAGATTAGAGAATGGTGATATAAATCATTCGGAGCAATCGGTTGTCATCAAATCAGAACCCATTGTAGAAATAGAAGAATATTATGAGAATCCTCCTCCTTTGACTCCACATCCACCTGATATTTTGATAGAGGGTGATGAAGAAAATAGTTCACAGATGAGTTTAGATGaaTTTCATATCAATGGAATTAATGATGACAGTATCAGGAGAAAGGATGGCAAGCAGTGTTCTTTTTGCAGCAAAGAATTTAGTACAGTTGGCAATCGTATGAAGCATGAAAGAATTATACACAGCAATAAACGGAAGTCTGCTCATCATGCAACTGGTTCGGTTACTTCCAATCAAGACGACTCGTCCCAACATTCTATGGAATCCCTGGCTAGCAGTTCGGCTATTACAGAAGCATCTGCGATGCCTCCCGATTCGGAAAATGAACAATCCTCTACAGAGCATACGGAGACGGACATTCAAAAAATTCAATTCGCAGCTGGTTTGCACCTAAAGCAAACGTCTGCGCCTGTAGCGGACAAGTACATCGATGGTCCACTGTCGAAAATAGAGTTAGCTTACTTAGATAGATGTAAAGCGATGGTGTCGATGTTGCACTCGTTTAAATGTTCTTGTCATAATGTTTGTTTTCCGACGGTCAAACGATTATTTGCACATCTACGGATGTGTTACACATGGTTTCCAATATTTACGTGTTACAATTGCGTAATAACGTTTTCTAACAGATCTGGTAGCATGAAACACACCGGTAAGTGTCCGAAgcaatatttagaaaacatcatCAGGATGGCGGATTTACGTAAACGAATGGAATCAAAATTGCGCATATATCAGTACAATAGGTGCGTGAAATGTGCTAACTTATACTCATTTTATGAAGATTACTGTGAGCACATTGATAAAGAGCACATGTCTGAGCCCCCGTACGTTTGCTTGTGTTCAAAAGAATTTGGAAGCGCCGAAGAATTCAAACAGCACTTGTACATATCATGTTATTTGAATTACTACTGTGATGTGTGTTACACTACGTTTGAGAGTATAAACGATTTTAAAACGCATTGCGAGTCCACTCACGATATCGTCGAAGAATACACGTTTGTAACTTTCGATGCGTCATTTAAATTAGTAAGTCACGAagaaatagtggctgcaaataaAAAACGTGTGTACGAGGAAGTTACTCCTCCAGATTTAGGATCAGGCGAAGAAGACGGTAATGAcaagaagaaaataaacttgGGCCCGAGAGTTGTGTATCAGGATCCTGTGAACTGTGAAATATGCGATCGTAGGTTTTCGAATTATTACACTTTGAAGAAACATATGAAAGGTCACCGTAAGAATAGTTACAGCAACGGTTGGAAAAATAAACCGTCGAGCTGTGATAAATGTGGTAAAGTGTTTTCTACTTTTTACAACATGCTACGACATAAAAGGGTCCATGACGAGTCTGAAAAGACTTTGCAGTGCGCCCTTTGCTCTGACAGGTTTAGATTGGTTTCTCAGTTGAAAGATCACTTGATTCTTGTGCACGGGCAGGCAAATGTGTGTCAAGAATGTGGAAAACAGTTCGAGTCTGTGGAAGAACTAGACCAACATAGAAGTGTACACTTGAATATAAAGGTTTATCGAGATTCAAAGACAGATTCATATCGAACGTCAACTCAACAGCGATTAACGTGTGAAATTTGTGATCGAACTTTTGAAAACGAAACCGATTTAAATGACCATATATTAAAGCACGAAACTATGCCAGTGTTGGATGCGCAGTGTGAAATTAAAGAAAGGAAAACTTTCCACAAGTTTTCTTGCCCCGATTGTGACAGGCATTATGTTAGTTATAAGGGCCTGTGGCTGCATAATAAAAGACATCATCCTGAAAGGAAAAAGGCTTCGCAACAGCCTTACCAATGCAGATATTGCGATAGGATTTTACAGACCAACGCTGCTTATCAAATGCATAAGCAGATGCATGAGCGTATGATGAAGCAAGGTATTAGTGGACCTTCAACTGTCAGAAATggtgatgaagaagaagaatcaTATCACACTTGCAAGCATTGCTTTAAAGTTTTCTCAAGTAAATACAATTTGAAGACACACTTGAAAACTCATGGCATAAATATTTCTCCTGGTCGTGCTTATTCGAAAACGGGTAAATTTGTTAAAACGTTCTGGTGCGACACCTGTCATCAAGCATGCCAGGGCTTTAGTGAATTGCAAAAACATAAGCAGGAACATATTGATGAAAAAATGCAGGACGCTGCACCGGAACTTGAAAATCAAGAAGAAGAAATGATAGAGCATAAACCACATCTTTTCCCATGTGATATATGTGCTACGGTGTTTACTTCTAAAGTTGCCGTTAGAAAGCATAAGGAGAAGCATGAAGTTGAAAATAGAGGAATAGGCAAACACAAGTTTGTCTATTGCAAATACTGTAAAATTCCTTTCTTAGATGTGAAAGCTTTAAACAATCACATGGAAATCGAGCATGAAGAAACAATGAAAGCGCAGAAAATGAGGAGAGATGTCTCAAAGAAGTTCGTGTGTGATTTGTGCAAGAAAGTTTTTGACACCGCCGGTGCTCTCTGTTCGCATCAAGGTTGGCACAAGAGAGGAAAGGCTGATAAGATGTTAAAATCTCAACAAAAATTATTCAGAAAAATGGTCAATGATATTCCTAAACCCTCATCTACAGGTGTCAATAAACATGAATGTACATCATGTTCATTAATGTTCTTAACCGATACTGCTCTTCAGATCCACATTTTAGAAGCACATAGAAATATAAATGCCACTGTTGTACCACCACGTTGTACAATTTGTAACTTAGATTTTAATACACAAGAAGCCTACGAAAATCATTCCCGTTTACATAAAATGGTCGACAGTTCCAAAGCATTTCCTTGCAAGTACTGCTTCAAAGGTTTCAGTAGGAGTGACTCTTTGAACGCACACATAAGACAATTTCACAATGAGTATCTGAAAACGTCGTTCAGATGCCATCATTGTGATCGTATATTCGAGAAACAAAACGCTCTCACCATTCATTTGAAAGTACACGAGAGGCAGAAAGTCACCGGCACGCCAGTTAAGCAGGCGAAATCTCACCTATATTCCTGTTCTATTTGTCACTTAGGATTTGATATACCCAAAGATCTTAGAAATCATATTATTACATCGCAtcctttttaa
- Protein Sequence
- MAEGRSANYSSCCRLCLSDKYNTLKPIFEDEADSRALSQKILHLLGVEVSSNDKLSTLICTGCLIQVNNWDSFKKECSENQMKLQEWMSLWIASGSDIGNMSIQIKDEPVDHEENQRLENGDINHSEQSVVIKSEPIVEIEEYYENPPPLTPHPPDILIEGDEENSSQMSLDEFHINGINDDSIRRKDGKQCSFCSKEFSTVGNRMKHERIIHSNKRKSAHHATGSVTSNQDDSSQHSMESLASSSAITEASAMPPDSENEQSSTEHTETDIQKIQFAAGLHLKQTSAPVADKYIDGPLSKIELAYLDRCKAMVSMLHSFKCSCHNVCFPTVKRLFAHLRMCYTWFPIFTCYNCVITFSNRSGSMKHTGKCPKQYLENIIRMADLRKRMESKLRIYQYNRCVKCANLYSFYEDYCEHIDKEHMSEPPYVCLCSKEFGSAEEFKQHLYISCYLNYYCDVCYTTFESINDFKTHCESTHDIVEEYTFVTFDASFKLVSHEEIVAANKKRVYEEVTPPDLGSGEEDGNDKKKINLGPRVVYQDPVNCEICDRRFSNYYTLKKHMKGHRKNSYSNGWKNKPSSCDKCGKVFSTFYNMLRHKRVHDESEKTLQCALCSDRFRLVSQLKDHLILVHGQANVCQECGKQFESVEELDQHRSVHLNIKVYRDSKTDSYRTSTQQRLTCEICDRTFENETDLNDHILKHETMPVLDAQCEIKERKTFHKFSCPDCDRHYVSYKGLWLHNKRHHPERKKASQQPYQCRYCDRILQTNAAYQMHKQMHERMMKQGISGPSTVRNGDEEEESYHTCKHCFKVFSSKYNLKTHLKTHGINISPGRAYSKTGKFVKTFWCDTCHQACQGFSELQKHKQEHIDEKMQDAAPELENQEEEMIEHKPHLFPCDICATVFTSKVAVRKHKEKHEVENRGIGKHKFVYCKYCKIPFLDVKALNNHMEIEHEETMKAQKMRRDVSKKFVCDLCKKVFDTAGALCSHQGWHKRGKADKMLKSQQKLFRKMVNDIPKPSSTGVNKHECTSCSLMFLTDTALQIHILEAHRNINATVVPPRCTICNLDFNTQEAYENHSRLHKMVDSSKAFPCKYCFKGFSRSDSLNAHIRQFHNEYLKTSFRCHHCDRIFEKQNALTIHLKVHERQKVTGTPVKQAKSHLYSCSICHLGFDIPKDLRNHIITSHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466667; iTF_01258386;
- 90% Identity
- iTF_00466667;
- 80% Identity
- -