Dpar007232.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284476.1:3191684-3205282[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.013 1.2 11.1 1.0 2 23 192 214 191 214 0.96 2 21 1.6 1.5e+02 4.5 0.6 1 19 465 483 465 486 0.88 3 21 4.2 3.9e+02 3.3 0.1 6 20 548 562 546 564 0.92 4 21 2.3 2.1e+02 4.1 3.5 1 19 570 588 570 593 0.91 5 21 5.2e-06 0.00048 21.8 1.1 3 23 660 680 658 680 0.96 6 21 1.6e-05 0.0014 20.4 1.6 2 23 695 716 694 716 0.97 7 21 1.6 1.5e+02 4.6 0.1 2 23 724 746 723 746 0.92 8 21 0.0044 0.4 12.6 0.1 2 23 751 772 751 772 0.96 9 21 3.7e-05 0.0034 19.2 0.2 2 23 795 816 794 816 0.97 10 21 0.0085 0.78 11.7 3.3 1 23 837 859 837 860 0.95 11 21 0.024 2.2 10.3 0.9 1 23 871 893 871 893 0.98 12 21 2.6e-05 0.0024 19.7 8.7 1 23 918 940 918 940 0.98 13 21 3.6 3.3e+02 3.5 3.8 3 23 962 982 960 982 0.96 14 21 0.0031 0.29 13.1 0.2 1 23 1010 1032 1010 1032 0.97 15 21 0.14 13 7.9 0.0 2 23 1046 1068 1045 1068 0.95 16 21 0.00041 0.038 15.9 0.4 1 23 1085 1107 1085 1107 0.95 17 21 4.5 4.1e+02 3.2 0.2 1 23 1141 1164 1141 1164 0.93 18 21 0.006 0.55 12.2 0.5 2 23 1175 1196 1175 1196 0.97 19 21 3.3e-06 0.0003 22.5 1.3 1 23 1205 1228 1205 1228 0.97 20 21 7.1e-05 0.0065 18.3 3.8 1 23 1236 1258 1236 1258 0.99 21 21 0.001 0.095 14.6 0.4 1 23 1276 1299 1276 1299 0.98
Sequence Information
- Coding Sequence
- ATGGCAGAAGGAAGATCTGCAAATTACAGTTCCTGTTGCCGACTCTGCTTGTCGGATAAGTACAATACAttgaagccaatatttgaagaTGAAGCGGATAGTCGGGCATTATCCCAAAAGATCTTGCATCTCCTGGGAGTTGAGGTGTCCTCCAATGACAAATTGTCCACCCTGATATGTACTGGGTGTTTAATCCAAGTAAACAACTGGGATAGTTTTAAGAAAGAATGTTCAGAAAACCAAACTAAACTTCAAGAATGGATGAGTCTTTGGATTTCAAGCGGATCTGACATAGGGAATAtgAGCATACAAATTAAAGACGAGCCAGTTGATCATGAAGAGAATCAAAGATTAGAGAATGGTGACATAAATCATTCGGAACAATCGGTTGTCATCAAATCAGAACCCATTGTAGAAATTGAAGAATATTATGAGAATCCTCCTCCTTTGACTCCACATCCACCTGATATTTTGATAGAGGGTGATGAAGAAGAAACTAGTTCACAGATGAGTTTAGATGaaTTTCATATCAATGGAATTAATGATGACAGTATCAGGAGAAAGGATGGCAAGCAGTGTTCTTTTTGCAGCAAAGAATTTAGTACAGTTGGCAATCGTATGAAGCATGAAAGAATTATACACAGCAATAAACGAAAGTCTGCTCATCATGCAACTGGTTCAGTATTAACGATGAAAACAGTTACTATTAGCAGGCGTGATTTAAGTGTTGCGTTCATCGAACGTGGCAGGCACACATCCACAGCCGAAAACTACATCAAAGCCAAATTTTCACTATCCGATGAAAATTTAACGTATGTTATTAAGAACATACAAAAAACTCCATTGCCATGTTTCAAAGCGAAGTGGAAGGCTGCTCACAGAATGAAAgacagatttttaaaaaacaatgaaGGCTGGCTTAATGGCGAATTTTCTATTCACTTGGAGGATGAATTAGGAGGCAAACGAGGAACGAATCATAAAGAGTCTGATAAAACCAAAAAACGAAAAGCAACGAAACCATTCTTTACTTCCAATCAAGATGACTCATCTCAACATTCTATGGAATCCCTGGCCAGCAGTTCAGCTATTACAGAAGCATCTGCAGTGCCTCCCGATTCGGAAAACGAACATTCCTCTACAGAGCATGCGGAGGCAGAcattcaaaaaatacaattcGCAGCTGGTTTGCACCTAAAGCAAACGTCTGCCCCTGTACCGGACAAGTACATCGATGGCCCACTGTCGAAAATAGAGTTAGCTTACTTAGATAGATGTAAAGCGATGGTGTCGATGTTGCACTCGTTTAAATGTTCCTGTCATAATGTTTGTTTTCCGACGGTCAAACGATTATTTGCACACCTACGAATGTGTTACACGTGGTTTCCAATATTTACGTGTTACAATTGCGTAATAACGTTTTCTAACAGATCCGGTAGCATGAAACACACCGGCAAGTGTCCGAAGCAATACTTGGAAAACATCATCAGGATGGCAGACTTGCGTAAGCGAATGGAATCAAAACTGCGCATCTACCAGTACAATAGGTGCGTGAAATGTGCTAACTTATACTCATTCTATGAAGATTACTGTGAGCACATCGACAAGGAGCACATGTCGGAGCCCCCGTACGTTTGCTTATGTTCAAAAGAATTTGGAAGTGCCGAAGAATTCAAGCAGCACTTGTACATATCGTGTTATCTGAATTACTACTGTGATGTGTGTTACACTACGTTCGAGAGTATAAACGATTTCAAAACGCATTGCGAGTCCACTCACGACGTCGTCGAGGAATACACGTTCGTCACTTTCGATGCGTCGTTTAAATTAGTAAGCCACGAAGAAATAGTGGCTGCGAATAAGAAACGTGTGTACGAGGAAGTTACCCCTCCAGATTTGGGATCAGGCGAAGAAGACGGTAATGAcaagaagaaaataaacttGGGGCCGAGAGTTGTGTATCAGGATCCTGTGAACTGTGAAATATGCGACCGTAGGTTTTCGAATTATTATACTTTGAAGAAACATATGAAAGGTCACCGTAAGAATAGTTACAGCAACGGTTGGAAAAATAAGCCGTCGAGCTGTGATAAGTGTGGTAAAGTGTTTTCTACTTTCTACAACATGCTGCGACATAAAAGGGTCCATGACGAGTCTGAAAAGACTTTGCAGTGCGCTCTTTGCTCCGACAGGTTTAGATTGGTTTCTCAGTTGAAAGATCACTTGATTCTTGTACACGGGCAGGCAAACGTATGTCAGGAATGTGGAAAACAGTTCGAGTCTGTGGAAGAACTAGATCAACATAGGAGTGTACACTTGAATATAAAGGTTTATCGAGACTCAAAGACAGACTCATATCGAACGTCGACTCAACAGCGATTAACGTGTGAAATTTGTGATCGAACTTTTGAAAACGAAACCGATTTGAATGACCATATATTAAAGCACGAAACCATGCCGGTGTTGGATGCGCAGTGTGAAATTAAAGAAAGGAAAACTTTCCACAAGTTTTCTTGCCCCGATTGTGACAGGCACTATGTTAGTTATAAGGGCCTATGGTTGCATAATAAAAGGCATCACCCTGAAAGGAAAAAGGCTTCGCAACAGCCTTACCAATGTAGATATTGCGATAGGATTTTGCAGACCAACGCTGCTTATCAAATGCATAAGCAGATGCACGAACGTATGATGAAGCAAGGCATTAGTGGACCTTCGACTGTCAGAAACggtgatgaagaagaagaatcaTATCACACTTGCAAGCATTGCTTTAAAGTTTTCTCAAGCAAATACAACTTGAAGACACACTTGAAAACTCACGGCATAAATATTTCTCCTGGTCGTGCTTATTCGAAGACGGGTAAATTTGTTAAAACGTTCTGGTGCGACACCTGTCATCAAGCGTGCCAGGGCTTCAGTGAATTGCAAAAACATAAGCAGGAACATATTGATGAGAAAATGCAAGACGCTGCACCGGAACTTGAAaaccaagaagaagaagaaatgatAGAGCATAAACCACATCTTTTCCCATGTGATATATGTGCTACGGTGTTTACTTCTAAAGTTGCCGTTAGAAAGCATAAGGAGAAGCACGAAGTTGAAAATCGAGGAGTAGGCAAGCACAAGTTTGTCTATTGCAAGTACTGTAAAATTCCTTTCTTAGACGTGGGCGCTTTAAATAATCACATGGAAATCGAGCATGAAGAAACAATGAAAGCGCAGAAAATGAGGAGAGATGTGTCAAAGAAGTTCGTGTGTGATTTGTGCAAGAAAGTTTTTGACACCGCCGGTGCTCTCTGTTCGCATCAAGGTTGGCACAAGCGAGGGAAGGCCGATAAGATGTTGAAATCTCAACAAAAACTATTCAGAAAAATGGTCAGCGATATTCCTAAACCCTCATCTACAGGTGTCAATAAACATGAATGTACATCATGTTCGTTAATGTTCTTAACCGATACTGCTCTTCAGATCCATATTTTAGAAGCGCATAGAAATATTAATGCGACCGTTGTACCACCACGTTGTACAATATGCAACTTAGATTTTAATACACAAGAAGCCTACGAGAATCATTCCCGTTTACATAAAATGGTCGACAGTTCGAAAGCGTTTCCCTGCAAGTACTGCTTCAAAGGTTTCAGTAGGAGTGACTCTCTGAACGCACACATAAGACAATTTCACAATGAGTATCTGAAAACGTCGTTCAAATGCCATCACTGTGATCGTATATTCGAGAAGCAGAACGCTCTCACCATTCACTTGAAAGTACACGAGAGGCAGAAAGTCACCGGCACGCCGGTTAAGCAGGCGAAATCTCACCTATATTCCTGCTCTATTTGTCACTTAGGATTTGATATACCCAAAGATCTTAGAAATCATATTATTACATCGCAtcctttttaa
- Protein Sequence
- MAEGRSANYSSCCRLCLSDKYNTLKPIFEDEADSRALSQKILHLLGVEVSSNDKLSTLICTGCLIQVNNWDSFKKECSENQTKLQEWMSLWISSGSDIGNMSIQIKDEPVDHEENQRLENGDINHSEQSVVIKSEPIVEIEEYYENPPPLTPHPPDILIEGDEEETSSQMSLDEFHINGINDDSIRRKDGKQCSFCSKEFSTVGNRMKHERIIHSNKRKSAHHATGSVLTMKTVTISRRDLSVAFIERGRHTSTAENYIKAKFSLSDENLTYVIKNIQKTPLPCFKAKWKAAHRMKDRFLKNNEGWLNGEFSIHLEDELGGKRGTNHKESDKTKKRKATKPFFTSNQDDSSQHSMESLASSSAITEASAVPPDSENEHSSTEHAEADIQKIQFAAGLHLKQTSAPVPDKYIDGPLSKIELAYLDRCKAMVSMLHSFKCSCHNVCFPTVKRLFAHLRMCYTWFPIFTCYNCVITFSNRSGSMKHTGKCPKQYLENIIRMADLRKRMESKLRIYQYNRCVKCANLYSFYEDYCEHIDKEHMSEPPYVCLCSKEFGSAEEFKQHLYISCYLNYYCDVCYTTFESINDFKTHCESTHDVVEEYTFVTFDASFKLVSHEEIVAANKKRVYEEVTPPDLGSGEEDGNDKKKINLGPRVVYQDPVNCEICDRRFSNYYTLKKHMKGHRKNSYSNGWKNKPSSCDKCGKVFSTFYNMLRHKRVHDESEKTLQCALCSDRFRLVSQLKDHLILVHGQANVCQECGKQFESVEELDQHRSVHLNIKVYRDSKTDSYRTSTQQRLTCEICDRTFENETDLNDHILKHETMPVLDAQCEIKERKTFHKFSCPDCDRHYVSYKGLWLHNKRHHPERKKASQQPYQCRYCDRILQTNAAYQMHKQMHERMMKQGISGPSTVRNGDEEEESYHTCKHCFKVFSSKYNLKTHLKTHGINISPGRAYSKTGKFVKTFWCDTCHQACQGFSELQKHKQEHIDEKMQDAAPELENQEEEEMIEHKPHLFPCDICATVFTSKVAVRKHKEKHEVENRGVGKHKFVYCKYCKIPFLDVGALNNHMEIEHEETMKAQKMRRDVSKKFVCDLCKKVFDTAGALCSHQGWHKRGKADKMLKSQQKLFRKMVSDIPKPSSTGVNKHECTSCSLMFLTDTALQIHILEAHRNINATVVPPRCTICNLDFNTQEAYENHSRLHKMVDSSKAFPCKYCFKGFSRSDSLNAHIRQFHNEYLKTSFKCHHCDRIFEKQNALTIHLKVHERQKVTGTPVKQAKSHLYSCSICHLGFDIPKDLRNHIITSHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00465234;
- 90% Identity
- iTF_00465234;
- 80% Identity
- -