Dvas014819.1
Basic Information
- Insect
- Dolichoris vasculosae
- Gene Symbol
- -
- Assembly
- GCA_018907195.1
- Location
- JACCHY010000020.1:4589781-4599374[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.034 8.4 8.5 2.1 1 23 362 384 362 384 0.97 2 18 0.082 20 7.3 1.3 2 23 429 450 429 450 0.94 3 18 0.0068 1.7 10.7 1.9 2 23 506 527 505 527 0.97 4 18 8e-05 0.019 16.7 2.7 2 23 580 601 579 601 0.97 5 18 0.0019 0.46 12.4 10.1 1 23 606 628 606 628 0.97 6 18 0.00012 0.029 16.2 0.6 1 21 635 655 635 659 0.92 7 18 0.0019 0.46 12.4 4.6 1 23 738 760 738 760 0.97 8 18 0.00052 0.13 14.2 4.5 1 23 805 827 805 827 0.96 9 18 0.00015 0.035 15.9 0.7 1 20 832 851 832 853 0.94 10 18 0.037 8.9 8.4 0.4 2 23 864 885 864 885 0.97 11 18 1.1e-05 0.0027 19.4 0.7 2 23 923 944 922 944 0.97 12 18 2.2e-05 0.0055 18.5 1.6 1 23 949 971 949 971 0.95 13 18 4.1e-05 0.01 17.7 1.9 1 23 977 999 977 999 0.98 14 18 4e-06 0.00097 20.8 0.4 1 23 1015 1037 1015 1037 0.95 15 18 3.2e-07 7.9e-05 24.3 0.6 1 23 1043 1065 1043 1065 0.99 16 18 1.6e-05 0.0038 19.0 0.2 1 23 1071 1093 1071 1093 0.98 17 18 0.00013 0.032 16.1 4.1 1 23 1099 1121 1099 1121 0.96 18 18 0.0092 2.2 10.3 0.4 1 20 1127 1146 1127 1148 0.89
Sequence Information
- Coding Sequence
- ATGGACGCTGTTGAAATAAATACGTCGGAGAATTCACGTCCGCTACCACCGAACGAAGACGACGTCGGTATGGTACCAGAGCACCAAGTGGAAATATGTCGTGTTTGCCTACTCGGTAATCCTATGATGCGGGGCCTCTTCGACGTGGATGATGGATTATCTTTGTCTGACAAGGCAATGAGTCTTACAAGTGTTAAGATATTGCATGGAGATGGATTGCCTTCTAATATCTGTTGTGATTGCGGTGACAGGCTTGAATTAGCATATAAGTTCAAACTGCAAGTAGAACAAGCAGACAGTGTATTACACGAGAGATTGGATTCATTAAATATAAAGGAAGAACTTTTTTTTAGCAACGTTGATGTTAATTTATCATCGCATAGACAACATATTGAAGAAATAACAGAGGAAGGTTTACTTTTGAAAGATCACATGGAACTTTTAAATGTTCAAAAAATAAATGAAGGAGAAAATGATTTACAAAATGAAGATGTACATAAACAAGCTAATAATGTTGTTATTGAACAATGTGAAATAGAAAAGTGTGAAAATAATGAAGAAACTCAACATATAACTCAAGATAAAGAACAAATTAAAATTACACAGGAACAAAATTTGCAGGAAATTAATAATGATCAACAAATTCTTAATCAAGACAATCATCAATTACAGGAAATATCTAATGAACAGCAAAATCATTCTTTTGGTGCGCAAGTATTACAAGAAATAATGCTTCATGAAATTCATGATCAAGAGCGAATGCAAGAATTAAATCAAACTCATCAGTTAGCGATGTATGAACATAATTATGTAGCAGAATCACAAACACGTGATATTACAAATGAGAATCTTATATTGAATGCAGAGGAAATGGAAAATGATGATAAAGAAGATGTACAAAGTCAGCAAGTGTACAATATACCTGAAGAATCTTTACCAATTGAATTAAATCGTAGAAGTAAACGAAAAATTAATCAAAGAAAAGCCATCATTGGTGAAGATTTTAACGAAGACAATTATTTTGAAAATCTTAATCTTAGCTCTAGATTAAAGGTTCAATCAGTTAAATCAGAAAAAATTTTTTTTATTTGTTATTTGTGTGATAAACAATTCTTATCAAAGGAAGTTTTAAAGGAACATATGCACTCTCATGAAGAAGTGAGGAAAACCCTTACTTTCACAAAAAACACAGTGGAGAAATCTGAAAAAATACTAGAAAAGTCTGAAAGCACACCTACAAATTTGATTCCATCCAAGTCCCCTTCAAGCGGAAAACATCCAAATACTTGTCCTCATTGTGGAAAAGAATACCTTTATATAATATCATATAATAAACATTTGAAGCAACATGAGAAGAATGAAGTAAAAGACGAGCTTATGCCTTTAGAAGTTTCATTTCATGAGGATAATGACGCATTAAATTTTCATGGATGCAATGATAATATTTTAATAAATTCAGATAGTGAACAAAACGAAGGAAAAAATGAAAAGGAATTTAAGCAACATAATACTGTAAAGTGTAATACTTGTGAAGAAAAATTTGATACAATAAACAAGTTAAGGAATCATCGTTCCAAGCACGTAGTTGAGGGTATACTTACAGAACAGGATCTAAAAACTGATATTGAACAAATTAATATTCAAGAAACAACTATTAAAAGTAAAGAGAATAGTGAAAAAGACAACGTGAATGAATTAAATGAATCGTCGATGAATAAGGAAGTATTAAGGGATCTAAAGTGTCCTCACTGTTCGATGAGCTATGCTCATAAGAAATCTCTTGCCAGGCATATAGAGAGCCATTCTGGTACTAAGTACACTTGCAAATTCTGTCATCAAAATTTTAGCAGAAAAGACCATTTGCATCGACATACCGAGCAACATAGTGGTCGACTGAAAAACTTTAGGTGCACACAGTGTAATAAAAGTTTCGGTAACGAGATAACTTTAAGAAGTCATATGATAGCAACAACTCATAAGACAACATTACATGGAAAAGAATCTGATCCAAACAAAAGAGTTAAAAGAGTAGCCGCTCGAGCAGCGCAGAAAATCATTGATCAAATTAAAACAGATCTCAGTATTGATGAATTTGAGGAGAATGAGCGAGATAGAGAAAAGGATAAGGATTTTACTGGAATAAAAACAGAATTCTGTATACCAAAAAGTGACCAGACGGTACTGAAGAAGTTTCAACGTAACTCCATGAATTTCTACTGTGCAACCTGCAATCAAAAGTACGCATCGAAACATGCTCTTACTAAGCATATGGAACATCACGTAAAAGATGAAAATACAAATAAACAAGAAAGGACAAAAAATGTCGATGACTACCGAGAAAATCAGGAAAATGAAGATAATGATGACGAAGATGATGATTTTGAAAGTGGTCTCGATTGGCCAACTGATAGTCATGAGTGCCTCACTTGCAAAAAACGCTACAGTACAAAAAAATCTCTTTTACGTCATCAATTGTTGCATGAAGAACCTAATTTTGAGTGTGATATATGTAATATCAAGTTTTATAGAAAGGATAAATTAAAAGCCCATTATGATAAATGCTCAGAAAAAAATCCTGATCAAGTACGTAAGTGTAACATCTGTGGTGATACCTTTGAAAATAATGAAATTTTAAGAGAGCATAGGATTAAACATGTAACAGAAGGTATACTGACAGAGGAGGATCTTCGTGAAATTGAACCAAGGCCAGAAGATAAAAATGAGGAAAAAGTACCACGCAAGAGACGAACGGATATTGTAGGTCTTGAATGCACAGAGTGTAATAAACGTTATACATCTAGAAAAGGATTATTAAGGCATATACAGGTACACGAGGGGAAAAAGTATCTATGTGATATATGTCCAAAGAAATTCTACAGACGAGAACATCTAAAAATTCATGTGGCGAAACATAACATGATCAAACCATATAAATGCCCTCGATGTACAAAGAGGTTTATTAAAGAAGAACAATTAAATAATCATCTTACAAAGCACGATAGAAGTTTTAAAAAAGTGAAGGAAGCTGATACCTCAAAAAGATTTTTATGCGAAATTTGTTCGAAAAGTTTTACTCAATCTACAACTCTCATTGCACATTTACGGGCTCATAATGGTATTAAACCTTATGTTTGTGAGGTCTGTTCGAGACCTTTTACAACAAATGCTTATTTAAAAATGCATATGAGAACACATACACAAGAACGGCCGTACATTTGCCAATACTGTTCTAGAGCATTTGCTCGCGCCGATACTTTAGCTAATCATTTAACTACACACACTGGGGAGGCTAAATATCACTGTAAATACTGCCCGAAAAACTTTAGGAGACTTAAGTCTCTCAAAGAACATGTTTTTATACATACTGGACAACGACCATATGCTTGCCCGACTTGTGACAGGCGGTTTAATAACAATGGTAGCAGATACGCGCACAGTAAGAGGTGTAAACAGAATGCATTGCAAAGTAGAGCTTCTTCGTTTAACACACAGCTCCTTAATACCGAACATGATCGTGAACAACAAGAACAAGAACAACAAGAACTGCAAAATCAATTACAGTCACAAAGGTTACATCAATCTACGATGGAACAGGCTCAGATCATTAAGCCACAGAATATCAAAACTATCACGATCACAAGATCAGATGGTGGTCTTAGCCAACAACATGTTATGGCACACCAGGAGATTTTGATGCCTCTGATATTACCTTTGACGGTTACCCTCACTGATGTCGGTGAAGAAGTTATTCTTCCCGAAGGCACAAAAATTTTCACGGCATAA
- Protein Sequence
- MDAVEINTSENSRPLPPNEDDVGMVPEHQVEICRVCLLGNPMMRGLFDVDDGLSLSDKAMSLTSVKILHGDGLPSNICCDCGDRLELAYKFKLQVEQADSVLHERLDSLNIKEELFFSNVDVNLSSHRQHIEEITEEGLLLKDHMELLNVQKINEGENDLQNEDVHKQANNVVIEQCEIEKCENNEETQHITQDKEQIKITQEQNLQEINNDQQILNQDNHQLQEISNEQQNHSFGAQVLQEIMLHEIHDQERMQELNQTHQLAMYEHNYVAESQTRDITNENLILNAEEMENDDKEDVQSQQVYNIPEESLPIELNRRSKRKINQRKAIIGEDFNEDNYFENLNLSSRLKVQSVKSEKIFFICYLCDKQFLSKEVLKEHMHSHEEVRKTLTFTKNTVEKSEKILEKSESTPTNLIPSKSPSSGKHPNTCPHCGKEYLYIISYNKHLKQHEKNEVKDELMPLEVSFHEDNDALNFHGCNDNILINSDSEQNEGKNEKEFKQHNTVKCNTCEEKFDTINKLRNHRSKHVVEGILTEQDLKTDIEQINIQETTIKSKENSEKDNVNELNESSMNKEVLRDLKCPHCSMSYAHKKSLARHIESHSGTKYTCKFCHQNFSRKDHLHRHTEQHSGRLKNFRCTQCNKSFGNEITLRSHMIATTHKTTLHGKESDPNKRVKRVAARAAQKIIDQIKTDLSIDEFEENERDREKDKDFTGIKTEFCIPKSDQTVLKKFQRNSMNFYCATCNQKYASKHALTKHMEHHVKDENTNKQERTKNVDDYRENQENEDNDDEDDDFESGLDWPTDSHECLTCKKRYSTKKSLLRHQLLHEEPNFECDICNIKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDTFENNEILREHRIKHVTEGILTEEDLREIEPRPEDKNEEKVPRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCPRCTKRFIKEEQLNNHLTKHDRSFKKVKEADTSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTTHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNALQSRASSFNTQLLNTEHDREQQEQEQQELQNQLQSQRLHQSTMEQAQIIKPQNIKTITITRSDGGLSQQHVMAHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305764; iTF_00304582;
- 90% Identity
- -
- 80% Identity
- -