Ccor005390.1
Basic Information
- Insect
- Ceratosolen corneri
- Gene Symbol
- -
- Assembly
- GCA_030522565.1
- Location
- JAPYYT010000872.1:43384-50945[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0053 0.98 11.2 1.8 1 23 359 381 359 381 0.97 2 18 0.093 17 7.3 1.3 2 23 425 446 425 446 0.94 3 18 0.001 0.19 13.4 1.4 2 23 502 523 501 523 0.97 4 18 9.1e-05 0.017 16.7 2.7 2 23 576 597 575 597 0.97 5 18 0.00056 0.1 14.3 8.6 1 23 602 624 602 624 0.95 6 18 0.0062 1.1 11.0 0.4 1 20 631 650 631 655 0.92 7 18 0.0007 0.13 13.9 3.6 1 23 734 756 734 756 0.97 8 18 0.00059 0.11 14.2 4.5 1 23 803 825 803 825 0.96 9 18 0.00028 0.051 15.2 0.7 1 20 830 849 830 851 0.94 10 18 0.037 6.8 8.5 0.3 2 23 862 883 862 883 0.97 11 18 1.3e-05 0.0023 19.4 0.7 2 23 921 942 920 942 0.97 12 18 2.6e-05 0.0047 18.5 1.6 1 23 947 969 947 969 0.95 13 18 4.7e-05 0.0085 17.6 1.9 1 23 975 997 975 997 0.98 14 18 4.5e-06 0.00083 20.8 0.4 1 23 1013 1035 1013 1035 0.95 15 18 6.6e-07 0.00012 23.5 0.6 1 23 1041 1063 1041 1063 0.98 16 18 1.8e-05 0.0032 19.0 0.2 1 23 1069 1091 1069 1091 0.98 17 18 0.00015 0.027 16.1 4.1 1 23 1097 1119 1097 1119 0.96 18 18 0.01 1.9 10.3 0.4 1 20 1125 1144 1125 1146 0.89
Sequence Information
- Coding Sequence
- ATGGACGCTGTCGAAATAAATACGTCGGAGGATTCGCGGCTGCCAGCGTCGAGCGACGACGACGTCGGCATGGTTTCCGAGCACCAAGTGGAAATATGTCGCGTTTGTCTCCTCGGTAATACCTTGATGCGAGGCATTTTTCATGTGGATGGTGTTTTGTCCCTGTCGGATAAGGCTATGAGTCTTACAAGCGTTAAGATGTTGCCTGGAGATGGATTACCTTCTCATATCTGCTGTGATTGCACTGATAAGCTGGAATTGGCGTACAAGTTCAAATTGCAAGTAGAGCAAGCAGATAGCGTATTACGAGAGAGATTAGATTCGCTAAACATGAAAGAAGAGCTTTTTTTTAGTGACGTAGATGTTAATTTATCAAGCCATAGACATAGTATTGGAGAAATAACAGAGGAAAGTTTGCTTCTAAAGGATCACATGGATTTGTTAAGTGTTCAGAAAATAAGCGAGGGAGATAGTTTGAAGAGCGAAGAGCTACAAAAACAaccaaataatgttattattgagcAGCATGAAATAACAGAGTATAAGAATGAAGATGAAAATCCACACTTAAATCAACATAcggaagaaattaaaattcctcTGGATCAAAATTTGCAGGAAATTAGCAATGACCAACAGATCTGTAGTCAAGAAGACCAACAACTACAGGAAATAACAAATGAACATAATCAATCATTTGGAGCACAGGTTTTACAAGAAATAATGCTCCATGAAATTAATGATGAAGAGAGAATACAAGAATTGAATCAAAATCATCAATTAGCACTGTACGAACATAATTATGTTGCAGAATCACAACCGGGTGATATTACAGATGAGAATCATACAGTGAATGCAgagATAATCGAAAAAGATGATAAAGAAGATGTACAAAATCAAGAAGCTTATAGTATACCAGAGGAACCTTCATCAGTGGAATCAACTCGCAGAAGTaaacgaaaaattaatcaacGAAAATCTCACGTTGAAGAATTTGACGAggacaattattttgaaaatcttaaCCTCAGCTCTAGATTGAAAGTCCAATCGGATAAATCAGAAAAAGTGTTTTTTATATGTTACCTGTgcgataaacaatttatatcaaAGGAAATTTTAAAAGAGCATATGCACTCCCACGAAGAAATACGAAAAACACTTACATACATGCATAAAGCAGTAGAAAAATCAGAGAAGGTACTGGAAAAACCAGATAGTCCTACAAATTCCGGTTCATTGAAATCACCTTCAAGTGGAAAACATCCAAACACTTGTCCTCATTGTGGAAAAGAATATCTGTATATTATATCTTACAACAAGCATTTGAAGCAACACGAGAAGAATGGAACAAAAGAAGAACTTATGCCTTTAGAAGTTTCATTTCAGGAAGATGACGACGCACTGAATTGTCATGGCTACAATGATAATCCATCGATGAATTCCGATAGTGAAGAAagcgagagaaaaaataaaaaagaagttaCAAAGAGGGACAGTATGAAGTGTAATACGTGCGATGAAGTATTtgacacaataaataaattaaggaatCATCGGTCCAAACATGTCGTTGAGGGTGTACTTACAGAGCAGGATctaaaatatgatattgatcAGCTCAATATTCAAGGAAAACCTACCAAAGGGAACGAGGATAATGATAGGTTTCACGAGGATGAGTCTAACGAATTGCCATCGAAGAAGCAAGAGTCAAAAGAATTAAAGTGTCCTCATTGTTCCATGAGCTACGCCCACAAAAAATCCCTTGCTAGACATATAGAGAGCCACTCTGGTACCAAGTACACTTGCAAGCTCTGCCATCAAAGTTTCAGCAGGAAAGACCATTTGCATCGTCACTCGGAACAGCACGCCGGTCGATACAAAAGCTTCAGGTGCACACAGTGCAATAAGATCTTTGGCAATGAGTTGACACTGAGGAGTCACGTGATAGCAACCAATCACAAAACGACGCTGCACGGCAAGGAATACGATCCAAATAAAAGGATCAAGAGAGTGGCAGCTAGAGCAGCCCAAAGGATCATCGACCAAATCAAGACAGACCTCAGTCTCGATGATTTCGAGGAagatgagcgagagagagaaaaggataaGGATTTTGACGAGGTCAAGGGGGACGCGTGTGCAACGAAGAACGAACATTCGGCAGCGAAGAAAATTCCACGCACCTCCATGAATTTTTACTGCGCCACTTGCAATCAGAAATACAATTCGAAACATGCTCTCACAAAGCACATGGAGCAGCATATAACAGAAGAGAATATGAGTAAACAGGAGAAGGTGAAAAATGTGGAGGAGCATCATCGAGAGAATCAGGAAAACGAGGAGAACGACGAGGAAGATGACGACGATTTCGAGAGTGGACTCGATTGGCCCACGGATAGTCACGAGTGCCTCACCTGCAAAAAGCGCTACAGCACAAAGAAGTCTCTACTGCGTCATCAACTGCTGCACGAGGAGCCGAACTTCGAGTGCGACATTTGCAATGTCAAATTCTATCGGAAGGATAAGCTGAAAGCGCACTACGACAAATGCTCGGAGAAGAATCCCGATCAAGTGCGTAAGTGTAATATTTGTGGCGATAGCTTTGAGAACAATGAAATATTGAGGGAACACAGGATCAAACACGTGACCGAAGGCATACTAACGGAGGAGGACTTGCGAGAGATCGAGCCACGACCCGAGGATAAAAACGAGGAAAAAGCACCGCGCAAGAGGCGAACGGATATTGTGGGTCTCGAGTGCACCGAGTGCAATAAACGTTACACATCCAGAAAGGGATTACTCAGGCATATACAAGTACACGAGGGGAAAAAGTATCTGTGCGACATCTGTCCAAAGAAATTTTATCGGCGAGAGCATCTGAAAATTCACGTGGCAAAGCACAACATGATCAAGCCATATAAATGCCCTCGATGCACAAAGCGATTCATCAAAGAAGAACAGTTGAACAATCACTTGACCAAGCACGACAGAAGCTTCAAAAAGGCGAAAGAAGCCGACACGTCGAAGAGATTTTTGTGCGAAATATGCTCAAAGAGCTTCACTCAATCGACTACTCTCATCGCGCATTTACGGGCCCACAATGGCATTAAGCCTTACATATGCGAAGTTTGCTCGCGGCCCTTCACCACGAACGCCTACTTGAAGATGCACATGAGGACGCATACGCAGGAAAGGCCCTACATCTGCCAATACTGCTCCAGGGCGTTCGCTCGAGCCGACACTTTGGCCAATCACTTGACTACGCACACTGGCGAGGCCAAGTACCACTGCAAATACTGCCCAAAAAACTTTCGGAGACTCAAATCGCTTAAGGAGCACGTTTTTATACACACGGGGCAGCGACCGTACGCCTGCCCGACTTGCGACAGAAGGTTCAACAATAATGGGAGCAGGTACGCCCACAGCAAGAGGTGCAAGCAGAACGCCTTGCAAGCCCGAGCTCCATCGCTTGGGGCGCAGCTCATCACTGCCGAGCAAAACGAACAACACGAGCAAAACGAGCAACAGGAGCAGGAGCTGCAGGAGCAGGAGGAGCAGCAGGAGATGCAGAATCAGCTGCAGTCGCAGAGGCTGCACCACCAGACGACCATTGGCCAGGCTCAGATAATTAAGCCGCAGAATATCAAAACCATCACGATTACGAGACCGGACGGCGGTCTTGGCCAGCAGCATGTGATGGCGCACCAGGAAATTCTCATGCCTCTGATATTGCCGCTCACGGTCACGCTTGCCGACGTCGGCGAAGAGGTCATACTCCCCGAAGGGACGAAAATTTTCACCGCCTAA
- Protein Sequence
- MDAVEINTSEDSRLPASSDDDVGMVSEHQVEICRVCLLGNTLMRGIFHVDGVLSLSDKAMSLTSVKMLPGDGLPSHICCDCTDKLELAYKFKLQVEQADSVLRERLDSLNMKEELFFSDVDVNLSSHRHSIGEITEESLLLKDHMDLLSVQKISEGDSLKSEELQKQPNNVIIEQHEITEYKNEDENPHLNQHTEEIKIPLDQNLQEISNDQQICSQEDQQLQEITNEHNQSFGAQVLQEIMLHEINDEERIQELNQNHQLALYEHNYVAESQPGDITDENHTVNAEIIEKDDKEDVQNQEAYSIPEEPSSVESTRRSKRKINQRKSHVEEFDEDNYFENLNLSSRLKVQSDKSEKVFFICYLCDKQFISKEILKEHMHSHEEIRKTLTYMHKAVEKSEKVLEKPDSPTNSGSLKSPSSGKHPNTCPHCGKEYLYIISYNKHLKQHEKNGTKEELMPLEVSFQEDDDALNCHGYNDNPSMNSDSEESERKNKKEVTKRDSMKCNTCDEVFDTINKLRNHRSKHVVEGVLTEQDLKYDIDQLNIQGKPTKGNEDNDRFHEDESNELPSKKQESKELKCPHCSMSYAHKKSLARHIESHSGTKYTCKLCHQSFSRKDHLHRHSEQHAGRYKSFRCTQCNKIFGNELTLRSHVIATNHKTTLHGKEYDPNKRIKRVAARAAQRIIDQIKTDLSLDDFEEDEREREKDKDFDEVKGDACATKNEHSAAKKIPRTSMNFYCATCNQKYNSKHALTKHMEQHITEENMSKQEKVKNVEEHHRENQENEENDEEDDDDFESGLDWPTDSHECLTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRIKHVTEGILTEEDLREIEPRPEDKNEEKAPRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCPRCTKRFIKEEQLNNHLTKHDRSFKKAKEADTSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYICEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTTHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNALQARAPSLGAQLITAEQNEQHEQNEQQEQELQEQEEQQEMQNQLQSQRLHHQTTIGQAQIIKPQNIKTITITRPDGGLGQQHVMAHQEILMPLILPLTVTLADVGEEVILPEGTKIFTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00464125;
- 90% Identity
- iTF_00305764;
- 80% Identity
- -